Gvermi6807.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6807.t1
Unique NameGvermi6807.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2351672..2352296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6807Gvermi6807Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2351672..2352296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6807.t1Gvermi6807.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2351672..2352296 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6807.t1.stop1Gvermi6807.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2351672..2351674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6807.t1.CDS1Gvermi6807.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2351672..2351676 -
Gvermi6807.t1.CDS2Gvermi6807.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2351761..2351862 -
Gvermi6807.t1.CDS3Gvermi6807.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2351945..2352296 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6807.t1.exon1Gvermi6807.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2351672..2351676 -
Gvermi6807.t1.exon2Gvermi6807.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2351761..2351862 -
Gvermi6807.t1.exon3Gvermi6807.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2351945..2352296 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6807.t1.intron1Gvermi6807.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2351677..2351760 -
Gvermi6807.t1.intron2Gvermi6807.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2351863..2351944 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6807.t1.start1Gvermi6807.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2352294..2352296 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6807.t1 ID=Gvermi6807.t1|Name=Gvermi6807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=153bp
MAFVLNLPRTSTAPVWITPTCKRKNNRRPNRRNRRAHHKPGSKSNTDLME
KVDIDTTDITTYVSCPICFNSIMLRPQHLTDAPLRIVCNCCEQETDATLE
RLENMDGTPFNAMAWRKGQDDYHRNHGLDDTEVNFARQWKARSVIKYLLM
LT*
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spliced messenger RNA

>Gvermi6807.t1 ID=Gvermi6807.t1|Name=Gvermi6807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=459bp|location=Sequence derived from alignment at ScGOVlb_88:2351672..2352296- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCGTCTTAAATCTGCCGAGAACAAGTACTGCCCCAGTCTGGAT
TACTCCAACATGCAAAAGAAAAAACAACCGACGCCCAAATCGCCGTAATC
GTCGTGCCCATCATAAGCCCGGGTCCAAGTCGAACACTGATCTCATGGAA
AAGGTTGACATAGACACGACTGATATTACAACTTACGTATCGTGTCCTAT
ATGTTTTAATAGCATCATGTTGCGACCACAGCATCTTACTGATGCACCTT
TGCGAATTGTGTGCAACTGCTGTGAGCAGGAGACTGATGCCACATTAGAG
CGTTTGGAGAACATGGATGGGACCCCTTTTAACGCCATGGCATGGCGAAA
AGGCCAAGATGATTATCACCGCAACCATGGTTTGGATGATACGGAGGTGA
ATTTTGCAAGGCAGTGGAAGGCCAGGTCTGTCATAAAGTATCTCTTGATG
TTAACGTAA
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protein sequence of Gvermi6807.t1

>Gvermi6807.t1 ID=Gvermi6807.t1|Name=Gvermi6807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bp
MAFVLNLPRTSTAPVWITPTCKRKNNRRPNRRNRRAHHKPGSKSNTDLME
KVDIDTTDITTYVSCPICFNSIMLRPQHLTDAPLRIVCNCCEQETDATLE
RLENMDGTPFNAMAWRKGQDDYHRNHGLDDTEVNFARQWKARSVIKYLLM
LT*
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mRNA from alignment at ScGOVlb_88:2351672..2352296-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6807.t1 ID=Gvermi6807.t1|Name=Gvermi6807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=625bp|location=Sequence derived from alignment at ScGOVlb_88:2351672..2352296- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTTCGTCTTAAATCTGCCGAGAACAAGTACTGCCCCAGTCTGGAT
TACTCCAACATGCAAAAGAAAAAACAACCGACGCCCAAATCGCCGTAATC
GTCGTGCCCATCATAAGCCCGGGTCCAAGTCGAACACTGATCTCATGGAA
AAGGTTGACATAGACACGACTGATATTACAACTTACGTATCGTGTCCTAT
ATGTTTTAATAGCATCATGTTGCGACCACAGCATCTTACTGATGCACCTT
TGCGAATTGTGTGCAACTGCTGTGAGCAGGAGACTGATGCCACATTAGAG
CGTTTGGAGAACATGGATGGGACCCCTTTTAACGCCATGGCATGGCGAAA
AGGTATGCTGGTTGCAGCGGGTCAACCGGCACCATATACGGAGCAAGATG
TCGCGAGTTATTTCGAGGAAAATATGTCGTTTAGGCCAAGATGATTATCA
CCGCAACCATGGTTTGGATGATACGGAGGTGAATTTTGCAAGGCAGTGGA
AGGCCAGGTCTGTCATAAAGTATCTCTTGATGTTAAGTAAGTCAGCGGGA
GGCGTATATTGTTCCGGAATTTGTCGCTTTTGGAGATTTAATCTAAGCTA
AGGTGTTTCAAATTTATTAGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2351672..2352296-

>Gvermi6807.t1 ID=Gvermi6807.t1|Name=Gvermi6807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=459bp|location=Sequence derived from alignment at ScGOVlb_88:2351672..2352296- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTTCGTCTTAAATCTGCCGAGAACAAGTACTGCCCCAGTCTGGAT
TACTCCAACATGCAAAAGAAAAAACAACCGACGCCCAAATCGCCGTAATC
GTCGTGCCCATCATAAGCCCGGGTCCAAGTCGAACACTGATCTCATGGAA
AAGGTTGACATAGACACGACTGATATTACAACTTACGTATCGTGTCCTAT
ATGTTTTAATAGCATCATGTTGCGACCACAGCATCTTACTGATGCACCTT
TGCGAATTGTGTGCAACTGCTGTGAGCAGGAGACTGATGCCACATTAGAG
CGTTTGGAGAACATGGATGGGACCCCTTTTAACGCCATGGCATGGCGAAA
AGGCCAAGATGATTATCACCGCAACCATGGTTTGGATGATACGGAGGTGA
ATTTTGCAAGGCAGTGGAAGGCCAGGTCTGTCATAAAGTATCTCTTGATG
TTAACGTAA
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