Gvermi6803.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6803.t1
Unique NameGvermi6803.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2340176..2341570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT050CT
PFAMsEamA
Max annot lvl2759|Eukaryota
Evalue1.08e-61
EggNOG OGsCOG0697@1|root,2S2UV@2759|Eukaryota
Descriptionpyrimidine nucleotide-sugar transmembrane transport
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6803Gvermi6803Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2340176..2341570 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6803.t1.start1Gvermi6803.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2340176..2340178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6803.t1.CDS1Gvermi6803.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2340176..2341570 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6803.t1.exon1Gvermi6803.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2340176..2341570 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6803.t1.stop1Gvermi6803.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2341568..2341570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6803.t1Gvermi6803.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2340176..2341570 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6803.t1 ID=Gvermi6803.t1|Name=Gvermi6803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=465bp
MRSSRQCLSFVSGHSVQLSFRLTQHNDLRTTWTGSKRRRTNQLQVSTSCP
RGRSTSLSIQNDGQKSAKRPVISPSAEDPKTTNTEFRKDPSGQNSSPVNG
VASNGVASTGAEKKSEPVSAPGPSGVNITLGKLKLNIPSRWLLFTVPLMW
GSFGPAVRLLFSQEPHQDPSVFNSERLLLSTLIYIPILITETKAYLNRNE
NKSISNSKDRFSFFPAGIELGVYVFLANVAQVIGLQQTSASRAAFLVQLQ
TVIVPVMAGVLGKAKIPVTTWVSSLVAVMGVALLSSDKGHGTVASLSGDA
LEVLSALFFSTYVFRLEKYCNSVAANPLVATKIAVQALLSIGWALFAEVG
SNIVHAPSDSPGHMASWTFNAIMVNVLVVAWTGLVSSALSGWAQTKGQQG
VPASEAVVIFATQPLWASAIAAVLLGETFGFRGVAGGGLIIAATLIASKK
RKENKNEGRRNEKA*
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spliced messenger RNA

>Gvermi6803.t1 ID=Gvermi6803.t1|Name=Gvermi6803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at ScGOVlb_88:2340176..2341570+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCATCGAGGCAGTGTCTCTCTTTTGTTTCTGGTCATTCGGTTCA
ACTTTCATTTCGTCTAACCCAGCACAATGACTTGAGAACAACATGGACCG
GTTCGAAACGCCGGAGAACAAATCAACTCCAGGTTTCCACAAGCTGTCCT
CGCGGGAGATCTACCTCTCTTTCGATCCAAAATGATGGACAGAAGTCAGC
AAAACGGCCGGTAATATCTCCCTCGGCAGAGGATCCGAAGACCACCAACA
CTGAATTCCGGAAAGACCCATCCGGCCAGAATAGCTCTCCCGTAAATGGC
GTCGCGTCCAATGGCGTAGCCTCAACCGGAGCCGAGAAAAAATCTGAGCC
TGTTTCAGCACCTGGTCCATCTGGCGTCAATATCACGCTGGGTAAACTGA
AACTGAACATACCTTCAAGATGGTTACTGTTCACCGTTCCATTAATGTGG
GGTTCTTTTGGTCCAGCAGTACGCCTTTTGTTCTCTCAAGAACCACACCA
AGACCCCTCTGTTTTTAATTCCGAGCGTCTGTTGCTGTCCACTCTAATAT
ATATTCCTATTCTCATAACAGAGACAAAGGCGTATCTAAATCGCAACGAG
AACAAGTCAATATCGAATAGTAAGGATCGATTTTCCTTCTTTCCTGCGGG
AATAGAACTTGGCGTTTATGTGTTTCTCGCGAATGTCGCGCAGGTCATTG
GATTGCAACAGACCAGTGCCAGTCGCGCTGCGTTCCTTGTTCAGTTACAG
ACGGTTATCGTTCCTGTCATGGCAGGCGTCTTGGGCAAGGCCAAGATCCC
AGTTACGACATGGGTCTCTTCTCTAGTTGCCGTCATGGGGGTCGCTCTTC
TGAGCTCGGACAAGGGTCACGGAACAGTTGCATCTCTTTCCGGAGATGCA
TTGGAAGTGCTCTCCGCGCTGTTTTTCTCTACCTATGTGTTCAGATTAGA
AAAGTACTGCAATTCGGTCGCAGCGAATCCGTTGGTGGCGACGAAGATTG
CTGTCCAAGCACTTTTGTCGATCGGCTGGGCTCTTTTTGCTGAAGTTGGT
TCAAATATCGTCCATGCGCCTAGTGATTCGCCGGGACACATGGCATCATG
GACCTTCAACGCAATTATGGTTAATGTACTTGTCGTGGCATGGACTGGAT
TGGTCTCCTCCGCACTTTCTGGATGGGCGCAGACGAAGGGACAGCAAGGG
GTTCCAGCAAGTGAAGCGGTGGTGATTTTTGCGACACAACCGTTATGGGC
TAGTGCGATAGCTGCTGTTTTGCTTGGAGAGACCTTCGGATTTCGAGGCG
TTGCAGGAGGTGGGCTAATAATTGCTGCGACGCTGATTGCGAGTAAAAAa
aggaaggaaaacaagaacgagggaaggaggaacgaaAAAGCATAA
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protein sequence of Gvermi6803.t1

>Gvermi6803.t1 ID=Gvermi6803.t1|Name=Gvermi6803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=465bp
MRSSRQCLSFVSGHSVQLSFRLTQHNDLRTTWTGSKRRRTNQLQVSTSCP
RGRSTSLSIQNDGQKSAKRPVISPSAEDPKTTNTEFRKDPSGQNSSPVNG
VASNGVASTGAEKKSEPVSAPGPSGVNITLGKLKLNIPSRWLLFTVPLMW
GSFGPAVRLLFSQEPHQDPSVFNSERLLLSTLIYIPILITETKAYLNRNE
NKSISNSKDRFSFFPAGIELGVYVFLANVAQVIGLQQTSASRAAFLVQLQ
TVIVPVMAGVLGKAKIPVTTWVSSLVAVMGVALLSSDKGHGTVASLSGDA
LEVLSALFFSTYVFRLEKYCNSVAANPLVATKIAVQALLSIGWALFAEVG
SNIVHAPSDSPGHMASWTFNAIMVNVLVVAWTGLVSSALSGWAQTKGQQG
VPASEAVVIFATQPLWASAIAAVLLGETFGFRGVAGGGLIIAATLIASKK
RKENKNEGRRNEKA*
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mRNA from alignment at ScGOVlb_88:2340176..2341570+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6803.t1 ID=Gvermi6803.t1|Name=Gvermi6803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at ScGOVlb_88:2340176..2341570+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTTCATCGAGGCAGTGTCTCTCTTTTGTTTCTGGTCATTCGGTTCA
ACTTTCATTTCGTCTAACCCAGCACAATGACTTGAGAACAACATGGACCG
GTTCGAAACGCCGGAGAACAAATCAACTCCAGGTTTCCACAAGCTGTCCT
CGCGGGAGATCTACCTCTCTTTCGATCCAAAATGATGGACAGAAGTCAGC
AAAACGGCCGGTAATATCTCCCTCGGCAGAGGATCCGAAGACCACCAACA
CTGAATTCCGGAAAGACCCATCCGGCCAGAATAGCTCTCCCGTAAATGGC
GTCGCGTCCAATGGCGTAGCCTCAACCGGAGCCGAGAAAAAATCTGAGCC
TGTTTCAGCACCTGGTCCATCTGGCGTCAATATCACGCTGGGTAAACTGA
AACTGAACATACCTTCAAGATGGTTACTGTTCACCGTTCCATTAATGTGG
GGTTCTTTTGGTCCAGCAGTACGCCTTTTGTTCTCTCAAGAACCACACCA
AGACCCCTCTGTTTTTAATTCCGAGCGTCTGTTGCTGTCCACTCTAATAT
ATATTCCTATTCTCATAACAGAGACAAAGGCGTATCTAAATCGCAACGAG
AACAAGTCAATATCGAATAGTAAGGATCGATTTTCCTTCTTTCCTGCGGG
AATAGAACTTGGCGTTTATGTGTTTCTCGCGAATGTCGCGCAGGTCATTG
GATTGCAACAGACCAGTGCCAGTCGCGCTGCGTTCCTTGTTCAGTTACAG
ACGGTTATCGTTCCTGTCATGGCAGGCGTCTTGGGCAAGGCCAAGATCCC
AGTTACGACATGGGTCTCTTCTCTAGTTGCCGTCATGGGGGTCGCTCTTC
TGAGCTCGGACAAGGGTCACGGAACAGTTGCATCTCTTTCCGGAGATGCA
TTGGAAGTGCTCTCCGCGCTGTTTTTCTCTACCTATGTGTTCAGATTAGA
AAAGTACTGCAATTCGGTCGCAGCGAATCCGTTGGTGGCGACGAAGATTG
CTGTCCAAGCACTTTTGTCGATCGGCTGGGCTCTTTTTGCTGAAGTTGGT
TCAAATATCGTCCATGCGCCTAGTGATTCGCCGGGACACATGGCATCATG
GACCTTCAACGCAATTATGGTTAATGTACTTGTCGTGGCATGGACTGGAT
TGGTCTCCTCCGCACTTTCTGGATGGGCGCAGACGAAGGGACAGCAAGGG
GTTCCAGCAAGTGAAGCGGTGGTGATTTTTGCGACACAACCGTTATGGGC
TAGTGCGATAGCTGCTGTTTTGCTTGGAGAGACCTTCGGATTTCGAGGCG
TTGCAGGAGGTGGGCTAATAATTGCTGCGACGCTGATTGCGAGTAAAAAa
aggaaggaaaacaagaacgagggaaggaggaacgaaAAAGCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2340176..2341570+

>Gvermi6803.t1 ID=Gvermi6803.t1|Name=Gvermi6803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1395bp|location=Sequence derived from alignment at ScGOVlb_88:2340176..2341570+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTTCATCGAGGCAGTGTCTCTCTTTTGTTTCTGGTCATTCGGTTCA
ACTTTCATTTCGTCTAACCCAGCACAATGACTTGAGAACAACATGGACCG
GTTCGAAACGCCGGAGAACAAATCAACTCCAGGTTTCCACAAGCTGTCCT
CGCGGGAGATCTACCTCTCTTTCGATCCAAAATGATGGACAGAAGTCAGC
AAAACGGCCGGTAATATCTCCCTCGGCAGAGGATCCGAAGACCACCAACA
CTGAATTCCGGAAAGACCCATCCGGCCAGAATAGCTCTCCCGTAAATGGC
GTCGCGTCCAATGGCGTAGCCTCAACCGGAGCCGAGAAAAAATCTGAGCC
TGTTTCAGCACCTGGTCCATCTGGCGTCAATATCACGCTGGGTAAACTGA
AACTGAACATACCTTCAAGATGGTTACTGTTCACCGTTCCATTAATGTGG
GGTTCTTTTGGTCCAGCAGTACGCCTTTTGTTCTCTCAAGAACCACACCA
AGACCCCTCTGTTTTTAATTCCGAGCGTCTGTTGCTGTCCACTCTAATAT
ATATTCCTATTCTCATAACAGAGACAAAGGCGTATCTAAATCGCAACGAG
AACAAGTCAATATCGAATAGTAAGGATCGATTTTCCTTCTTTCCTGCGGG
AATAGAACTTGGCGTTTATGTGTTTCTCGCGAATGTCGCGCAGGTCATTG
GATTGCAACAGACCAGTGCCAGTCGCGCTGCGTTCCTTGTTCAGTTACAG
ACGGTTATCGTTCCTGTCATGGCAGGCGTCTTGGGCAAGGCCAAGATCCC
AGTTACGACATGGGTCTCTTCTCTAGTTGCCGTCATGGGGGTCGCTCTTC
TGAGCTCGGACAAGGGTCACGGAACAGTTGCATCTCTTTCCGGAGATGCA
TTGGAAGTGCTCTCCGCGCTGTTTTTCTCTACCTATGTGTTCAGATTAGA
AAAGTACTGCAATTCGGTCGCAGCGAATCCGTTGGTGGCGACGAAGATTG
CTGTCCAAGCACTTTTGTCGATCGGCTGGGCTCTTTTTGCTGAAGTTGGT
TCAAATATCGTCCATGCGCCTAGTGATTCGCCGGGACACATGGCATCATG
GACCTTCAACGCAATTATGGTTAATGTACTTGTCGTGGCATGGACTGGAT
TGGTCTCCTCCGCACTTTCTGGATGGGCGCAGACGAAGGGACAGCAAGGG
GTTCCAGCAAGTGAAGCGGTGGTGATTTTTGCGACACAACCGTTATGGGC
TAGTGCGATAGCTGCTGTTTTGCTTGGAGAGACCTTCGGATTTCGAGGCG
TTGCAGGAGGTGGGCTAATAATTGCTGCGACGCTGATTGCGAGTAAAAAa
aggaaggaaaacaagaacgagggaaggaggaacgaaAAAGCATAA
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