Gvermi6802.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6802.t1
Unique NameGvermi6802.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2338291..2339271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1499502.EV12_1855
PFAMsTPR_1,TPR_11,TPR_16,TPR_2,TPR_6
Max annot lvl1117|Cyanobacteria
Evalue1.98e-39
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1G0IA@1117|Cyanobacteria,1MKCX@1212|Prochloraceae
DescriptionAlternative locus ID
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6802Gvermi6802Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2338291..2339271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6802.t1Gvermi6802.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2338291..2339271 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6802.t1.stop1Gvermi6802.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2338291..2338293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6802.t1.CDS1Gvermi6802.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2338291..2338396 -
Gvermi6802.t1.CDS2Gvermi6802.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2338490..2339271 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6802.t1.exon1Gvermi6802.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2338291..2338396 -
Gvermi6802.t1.exon2Gvermi6802.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2338490..2339271 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6802.t1.intron1Gvermi6802.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2338397..2338489 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6802.t1.start1Gvermi6802.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2339269..2339271 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6802.t1 ID=Gvermi6802.t1|Name=Gvermi6802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=296bp
MSAVTSSKTQNVTRRNFLIAVAANFALTTSAARAGTTTLSEEAKSKAVEE
FRKVTALQDLAFQYTNQMRFSDAEVLWSKIISLNEDNAAAYSNRGNCRTS
QAKFDEAIQDFSRAIKLAPEEPDCYLGLGVALEGRHEYEQALQAYRTSND
LSVKRSGKQDAVALNNIGNAYGGLGDWQKACEYYKQAATAEKKFVFALAN
QALAEYELGDDKGALQTMKFLTLKYPAFSDMHAAIAMVLWERGDRAQAED
EWFKAVQADGRYEDKAWVSEVRRWPPRLVNILTRFRGLSEGTASV*
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spliced messenger RNA

>Gvermi6802.t1 ID=Gvermi6802.t1|Name=Gvermi6802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=888bp|location=Sequence derived from alignment at ScGOVlb_88:2338291..2339271- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGGTGACAAGTAGTAAAACACAAAATGTAACCAGAAGAAACTT
TCTAATTGCAGTGGCTGCAAATTTCGCTCTGACAACTTCTGCGGCGCGAG
CCGGCACCACGACGCTCTCAGAGGAGGCAAAATCAAAAGCAGTAGAGGAG
TTTCGAAAGGTGACGGCGCTGCAGGATTTAGCGTTCCAGTACACGAACCA
GATGCGCTTTTCAGATGCTGAAGTGCTCTGGAGCAAGATTATCAGTCTCA
ATGAAGACAACGCCGCAGCGTATTCAAATCGGGGAAACTGCCGGACATCG
CAAGCAAAGTTTGACGAAGCCATTCAGGACTTCTCGCGCGCCATCAAGTT
GGCGCCAGAAGAGCCAGACTGCTATCTTGGACTGGGAGTGGCTCTGGAAG
GGCGACACGAGTACGAACAGGCGCTTCAAGCGTACAGAACAAGTAACGAC
TTGAGCGTGAAAAGGTCTGGAAAACAGGATGCAGTTGCGCTCAACAATAT
AGGAAACGCCTACGGTGGCTTGGGCGACTGGCAAAAGGCTTGTGAGTACT
ACAAACAGGCCGCCACGGCAGAGAAAAAGTTTGTGTTTGCGCTGGCGAAT
CAGGCGTTGGCCGAATACGAATTGGGCGATGACAAGGGTGCGTTGCAGAC
GATGAAATTTTTGACTCTCAAGTACCCAGCCTTCAGCGACATGCACGCGG
CGATTGCCATGGTTCTCTGGGAAAGAGGTGATCGGGCGCAGGCCGAGGAC
GAATGGTTCAAAGCTGTTCAAGCCGATGGGAGGTATGAAGATAAGGCGTG
GGTGAGCGAAGTAAGGAGATGGCCGCCTAGGTTGGTGAACATATTGACAC
GATTTAGAGGTCTGTCCGAGGGAACGGCGTCCGTTTGA
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protein sequence of Gvermi6802.t1

>Gvermi6802.t1 ID=Gvermi6802.t1|Name=Gvermi6802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=296bp
MSAVTSSKTQNVTRRNFLIAVAANFALTTSAARAGTTTLSEEAKSKAVEE
FRKVTALQDLAFQYTNQMRFSDAEVLWSKIISLNEDNAAAYSNRGNCRTS
QAKFDEAIQDFSRAIKLAPEEPDCYLGLGVALEGRHEYEQALQAYRTSND
LSVKRSGKQDAVALNNIGNAYGGLGDWQKACEYYKQAATAEKKFVFALAN
QALAEYELGDDKGALQTMKFLTLKYPAFSDMHAAIAMVLWERGDRAQAED
EWFKAVQADGRYEDKAWVSEVRRWPPRLVNILTRFRGLSEGTASV*
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mRNA from alignment at ScGOVlb_88:2338291..2339271-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6802.t1 ID=Gvermi6802.t1|Name=Gvermi6802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=981bp|location=Sequence derived from alignment at ScGOVlb_88:2338291..2339271- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCGGTGACAAGTAGTAAAACACAAAATGTAACCAGAAGAAACTT
TCTAATTGCAGTGGCTGCAAATTTCGCTCTGACAACTTCTGCGGCGCGAG
CCGGCACCACGACGCTCTCAGAGGAGGCAAAATCAAAAGCAGTAGAGGAG
TTTCGAAAGGTGACGGCGCTGCAGGATTTAGCGTTCCAGTACACGAACCA
GATGCGCTTTTCAGATGCTGAAGTGCTCTGGAGCAAGATTATCAGTCTCA
ATGAAGACAACGCCGCAGCGTATTCAAATCGGGGAAACTGCCGGACATCG
CAAGCAAAGTTTGACGAAGCCATTCAGGACTTCTCGCGCGCCATCAAGTT
GGCGCCAGAAGAGCCAGACTGCTATCTTGGACTGGGAGTGGCTCTGGAAG
GGCGACACGAGTACGAACAGGCGCTTCAAGCGTACAGAACAAGTAACGAC
TTGAGCGTGAAAAGGTCTGGAAAACAGGATGCAGTTGCGCTCAACAATAT
AGGAAACGCCTACGGTGGCTTGGGCGACTGGCAAAAGGCTTGTGAGTACT
ACAAACAGGCCGCCACGGCAGAGAAAAAGTTTGTGTTTGCGCTGGCGAAT
CAGGCGTTGGCCGAATACGAATTGGGCGATGACAAGGGTGCGTTGCAGAC
GATGAAATTTTTGACTCTCAAGTACCCAGCCTTCAGCGACATGCACGCGG
CGATTGCCATGGTTCTCTGGGAAAGAGGTGATCGGGCGCAGGCCGAGGAC
GAATGGTTCAAAGCTGTTCAAGCCGATGGGAGGTTCGTTGTTTGATGTAC
ACATTTGCGTGCGTTTGCGTGCCTGCGGTTGACGCTAACATCCTAGAGCG
AACTTTTTTGATGTACTGTACACAGGTATGAAGATAAGGCGTGGGTGAGC
GAAGTAAGGAGATGGCCGCCTAGGTTGGTGAACATATTGACACGATTTAG
AGGTCTGTCCGAGGGAACGGCGTCCGTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2338291..2339271-

>Gvermi6802.t1 ID=Gvermi6802.t1|Name=Gvermi6802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=888bp|location=Sequence derived from alignment at ScGOVlb_88:2338291..2339271- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCGGTGACAAGTAGTAAAACACAAAATGTAACCAGAAGAAACTT
TCTAATTGCAGTGGCTGCAAATTTCGCTCTGACAACTTCTGCGGCGCGAG
CCGGCACCACGACGCTCTCAGAGGAGGCAAAATCAAAAGCAGTAGAGGAG
TTTCGAAAGGTGACGGCGCTGCAGGATTTAGCGTTCCAGTACACGAACCA
GATGCGCTTTTCAGATGCTGAAGTGCTCTGGAGCAAGATTATCAGTCTCA
ATGAAGACAACGCCGCAGCGTATTCAAATCGGGGAAACTGCCGGACATCG
CAAGCAAAGTTTGACGAAGCCATTCAGGACTTCTCGCGCGCCATCAAGTT
GGCGCCAGAAGAGCCAGACTGCTATCTTGGACTGGGAGTGGCTCTGGAAG
GGCGACACGAGTACGAACAGGCGCTTCAAGCGTACAGAACAAGTAACGAC
TTGAGCGTGAAAAGGTCTGGAAAACAGGATGCAGTTGCGCTCAACAATAT
AGGAAACGCCTACGGTGGCTTGGGCGACTGGCAAAAGGCTTGTGAGTACT
ACAAACAGGCCGCCACGGCAGAGAAAAAGTTTGTGTTTGCGCTGGCGAAT
CAGGCGTTGGCCGAATACGAATTGGGCGATGACAAGGGTGCGTTGCAGAC
GATGAAATTTTTGACTCTCAAGTACCCAGCCTTCAGCGACATGCACGCGG
CGATTGCCATGGTTCTCTGGGAAAGAGGTGATCGGGCGCAGGCCGAGGAC
GAATGGTTCAAAGCTGTTCAAGCCGATGGGAGGTATGAAGATAAGGCGTG
GGTGAGCGAAGTAAGGAGATGGCCGCCTAGGTTGGTGAACATATTGACAC
GATTTAGAGGTCTGTCCGAGGGAACGGCGTCCGTTTGA
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