Gvermi6799.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6799.t1
Unique NameGvermi6799.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2331515..2332288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr9701
PFAMsRRM_1
Max annot lvl2836|Bacillariophyta
KEGG koko:K13107
Evalue8.15e-38
EggNOG OGsKOG0126@1|root,KOG0126@2759|Eukaryota,2XCM7@2836|Bacillariophyta
DescriptionPfam:RRM_6
COG categoryA
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6799Gvermi6799Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2331515..2332288 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6799.t1.start1Gvermi6799.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2331515..2331517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6799.t1.CDS1Gvermi6799.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2331515..2332288 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6799.t1.exon1Gvermi6799.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2331515..2332288 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6799.t1.stop1Gvermi6799.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2332286..2332288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6799.t1Gvermi6799.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2331515..2332288 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=258bp
MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRL
LAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEI
DGRNLRVDHVENYRMPEDSGMDFTPDGFHEAQEFAEEHISEALAEETATE
KRRQAAVMERLQALRKKRRIQAPSKTEKPDSKQPRQASRKEDVEPGATND
KTLLQETNHTIHATVVSSYQTDKEKRRREKDMRRLERARIRRERAERRAK
RDQASNP*
back to top

spliced messenger RNA

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2331515..2332288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGATAAATGTCATCAACAACTTGAACCAGACTGAGCTGGAGCA
GGGCATCGCCGGCACAACCGCCTCATGGCACCACAAGTACATCTCTTCAG
ACGCCATTTGGGTAGGCGGCTTGTCCCCATCGATAACTGAAGACAGGCTG
TTGGCCGTTCTCGAGCAATACGGCACGATACTGCATGTTAATGTAGTGCG
CGACGCAAATACTTGCGAATCCAAAGGCTATGCGTTTGCACGATACGCAG
ACCCTCGAAGTTGCGTGCTTGCCGTCGACAATTTTACTGGCTTTGAGATC
GATGGCCGCAATCTTCGCGTCGACCATGTCGAGAATTATCGCATGCCGGA
AGATAGCGGAATGGACTTCACACCAGACGGCTTTCACGAGGCTCAAGAGT
TTGCCGAAGAGCACATTTCAGAGGCGCTTGCAGAAGAAACTGCAACGGAA
AAGAGGAGACAGGCGGCCGTAATGGAACGACTGCAAGCATTGCGAAAGAA
AAGGCGCATACAAGCGCCCTCGAAAACAGAAAAGCCCGATTCAAAACAAC
CAAGACAAGCAAGTCGTAAAGAAGACGTTGAACCAGGCGCAACAAACGAC
AAAACACTCTTACAAGAAACAAATCATACAATACATGCTACTGTTGTAAG
CTCGTATCAAACCGATAAAGAGAAGCGCCGTCGTGAAAAAGATATGCGTC
GTTTGGAGCGAGCAAGGATAAGAAGAGAGCGGGCGGAGAGGAGAGCCAAG
CGAGATCAAGCCTCAAATCCATAA
back to top

protein sequence of Gvermi6799.t1

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MNKINVINNLNQTELEQGIAGTTASWHHKYISSDAIWVGGLSPSITEDRL
LAVLEQYGTILHVNVVRDANTCESKGYAFARYADPRSCVLAVDNFTGFEI
DGRNLRVDHVENYRMPEDSGMDFTPDGFHEAQEFAEEHISEALAEETATE
KRRQAAVMERLQALRKKRRIQAPSKTEKPDSKQPRQASRKEDVEPGATND
KTLLQETNHTIHATVVSSYQTDKEKRRREKDMRRLERARIRRERAERRAK
RDQASNP*
back to top

mRNA from alignment at ScGOVlb_88:2331515..2332288+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2331515..2332288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACAAGATAAATGTCATCAACAACTTGAACCAGACTGAGCTGGAGCA
GGGCATCGCCGGCACAACCGCCTCATGGCACCACAAGTACATCTCTTCAG
ACGCCATTTGGGTAGGCGGCTTGTCCCCATCGATAACTGAAGACAGGCTG
TTGGCCGTTCTCGAGCAATACGGCACGATACTGCATGTTAATGTAGTGCG
CGACGCAAATACTTGCGAATCCAAAGGCTATGCGTTTGCACGATACGCAG
ACCCTCGAAGTTGCGTGCTTGCCGTCGACAATTTTACTGGCTTTGAGATC
GATGGCCGCAATCTTCGCGTCGACCATGTCGAGAATTATCGCATGCCGGA
AGATAGCGGAATGGACTTCACACCAGACGGCTTTCACGAGGCTCAAGAGT
TTGCCGAAGAGCACATTTCAGAGGCGCTTGCAGAAGAAACTGCAACGGAA
AAGAGGAGACAGGCGGCCGTAATGGAACGACTGCAAGCATTGCGAAAGAA
AAGGCGCATACAAGCGCCCTCGAAAACAGAAAAGCCCGATTCAAAACAAC
CAAGACAAGCAAGTCGTAAAGAAGACGTTGAACCAGGCGCAACAAACGAC
AAAACACTCTTACAAGAAACAAATCATACAATACATGCTACTGTTGTAAG
CTCGTATCAAACCGATAAAGAGAAGCGCCGTCGTGAAAAAGATATGCGTC
GTTTGGAGCGAGCAAGGATAAGAAGAGAGCGGGCGGAGAGGAGAGCCAAG
CGAGATCAAGCCTCAAATCCATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2331515..2332288+

>Gvermi6799.t1 ID=Gvermi6799.t1|Name=Gvermi6799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2331515..2332288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACAAGATAAATGTCATCAACAACTTGAACCAGACTGAGCTGGAGCA
GGGCATCGCCGGCACAACCGCCTCATGGCACCACAAGTACATCTCTTCAG
ACGCCATTTGGGTAGGCGGCTTGTCCCCATCGATAACTGAAGACAGGCTG
TTGGCCGTTCTCGAGCAATACGGCACGATACTGCATGTTAATGTAGTGCG
CGACGCAAATACTTGCGAATCCAAAGGCTATGCGTTTGCACGATACGCAG
ACCCTCGAAGTTGCGTGCTTGCCGTCGACAATTTTACTGGCTTTGAGATC
GATGGCCGCAATCTTCGCGTCGACCATGTCGAGAATTATCGCATGCCGGA
AGATAGCGGAATGGACTTCACACCAGACGGCTTTCACGAGGCTCAAGAGT
TTGCCGAAGAGCACATTTCAGAGGCGCTTGCAGAAGAAACTGCAACGGAA
AAGAGGAGACAGGCGGCCGTAATGGAACGACTGCAAGCATTGCGAAAGAA
AAGGCGCATACAAGCGCCCTCGAAAACAGAAAAGCCCGATTCAAAACAAC
CAAGACAAGCAAGTCGTAAAGAAGACGTTGAACCAGGCGCAACAAACGAC
AAAACACTCTTACAAGAAACAAATCATACAATACATGCTACTGTTGTAAG
CTCGTATCAAACCGATAAAGAGAAGCGCCGTCGTGAAAAAGATATGCGTC
GTTTGGAGCGAGCAAGGATAAGAAGAGAGCGGGCGGAGAGGAGAGCCAAG
CGAGATCAAGCCTCAAATCCATAA
back to top