Gvermi6798.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6798.t1
Unique NameGvermi6798.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2330266..2330910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7370.XP_005175172.1
PFAMsRNase_Zc3h12a
Max annot lvl33208|Metazoa
KEGG koko:K18668
Evalue0.000276
EggNOG OGsKOG3777@1|root,KOG3777@2759|Eukaryota,3A43U@33154|Opisthokonta,3BS89@33208|Metazoa,3D8J3@33213|Bilateria,42077@6656|Arthropoda,3SN5P@50557|Insecta,453JU@7147|Diptera
DescriptionZc3h12a-like Ribonuclease NYN domain
COG categoryS
BRITEko00000,ko01000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6798Gvermi6798Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2330266..2330910 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6798.t1.start1Gvermi6798.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2330266..2330268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6798.t1.CDS1Gvermi6798.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2330266..2330910 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6798.t1.exon1Gvermi6798.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2330266..2330910 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6798.t1.stop1Gvermi6798.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2330908..2330910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6798.t1Gvermi6798.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2330266..2330910 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6798.t1 ID=Gvermi6798.t1|Name=Gvermi6798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=215bp
MNFSGVAKLKSTDKNHETKKKNETKKKNETKRNSSSAKEKKKLFRHPAAI
KARAEYDVVIDGLNVGKEYSVRRRFRTKGIERALEYFERQGKRPVAILPN
DFGGGDDPKRMRKLVDQGRVLMVGKKVKHEKFHDYNVILYGVRNNAAIIS
NNKYRAAPYNKLKIEQYVLQDKFLVPCAFIKRQFIPNPDPAHLADVMKYT
TRTSHLKDVMGLHV*
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spliced messenger RNA

>Gvermi6798.t1 ID=Gvermi6798.t1|Name=Gvermi6798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=645bp|location=Sequence derived from alignment at ScGOVlb_88:2330266..2330910+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTCTCAGGAGTAGCAAAGCTCAAAAGCACTGACaagaatcatga
aacgaagaagaagaacgaaaccaagaagaagaacgaaaccaagaggaaTT
CAAGCTCTGCCAAAGAAAAGAAAAAACTTTTTCGGCACCCAGCGGCGATA
AAAGCTAGGGCCGAATACGACGTCGTGATTGACGGGCTAAACGTCGGGAA
AGAGTACAGCGTCAGACGCAGATTTCGAACCAAAGGTATTGAACGTGCCT
TAGAATACTTTGAAAGGCAGGGCAAAAGACCGGTGGCAATACTTCCCAAT
GATTTTGGAGGCGGTGACGACCCAAAGAGAATGAGGAAACTGGTTGATCA
AGGGCGTGTGTTAATGGTTGGAAAGAAAGTTAAGCACGAGAAATTCCACG
ACTACAACGTCATTTTGTACGGGGTCCGGAACAATGCGGCTATCATTTCG
AACAATAAGTATCGAGCGGCGCCTTACAACAAGCTGAAAATCGAACAGTA
CGTTTTACAGGACAAGTTCTTAGTTCCATGTGCGTTTATAAAACGCCAGT
TTATTCCAAATCCAGACCCCGCACACTTGGCCGATGTAATGAAATATACA
ACTCGAACTAGCCATCTAAAAGATGTTATGGGTTTACATGTTTAG
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protein sequence of Gvermi6798.t1

>Gvermi6798.t1 ID=Gvermi6798.t1|Name=Gvermi6798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=215bp
MNFSGVAKLKSTDKNHETKKKNETKKKNETKRNSSSAKEKKKLFRHPAAI
KARAEYDVVIDGLNVGKEYSVRRRFRTKGIERALEYFERQGKRPVAILPN
DFGGGDDPKRMRKLVDQGRVLMVGKKVKHEKFHDYNVILYGVRNNAAIIS
NNKYRAAPYNKLKIEQYVLQDKFLVPCAFIKRQFIPNPDPAHLADVMKYT
TRTSHLKDVMGLHV*
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mRNA from alignment at ScGOVlb_88:2330266..2330910+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6798.t1 ID=Gvermi6798.t1|Name=Gvermi6798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=645bp|location=Sequence derived from alignment at ScGOVlb_88:2330266..2330910+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTTCTCAGGAGTAGCAAAGCTCAAAAGCACTGACaagaatcatga
aacgaagaagaagaacgaaaccaagaagaagaacgaaaccaagaggaaTT
CAAGCTCTGCCAAAGAAAAGAAAAAACTTTTTCGGCACCCAGCGGCGATA
AAAGCTAGGGCCGAATACGACGTCGTGATTGACGGGCTAAACGTCGGGAA
AGAGTACAGCGTCAGACGCAGATTTCGAACCAAAGGTATTGAACGTGCCT
TAGAATACTTTGAAAGGCAGGGCAAAAGACCGGTGGCAATACTTCCCAAT
GATTTTGGAGGCGGTGACGACCCAAAGAGAATGAGGAAACTGGTTGATCA
AGGGCGTGTGTTAATGGTTGGAAAGAAAGTTAAGCACGAGAAATTCCACG
ACTACAACGTCATTTTGTACGGGGTCCGGAACAATGCGGCTATCATTTCG
AACAATAAGTATCGAGCGGCGCCTTACAACAAGCTGAAAATCGAACAGTA
CGTTTTACAGGACAAGTTCTTAGTTCCATGTGCGTTTATAAAACGCCAGT
TTATTCCAAATCCAGACCCCGCACACTTGGCCGATGTAATGAAATATACA
ACTCGAACTAGCCATCTAAAAGATGTTATGGGTTTACATGTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2330266..2330910+

>Gvermi6798.t1 ID=Gvermi6798.t1|Name=Gvermi6798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=645bp|location=Sequence derived from alignment at ScGOVlb_88:2330266..2330910+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTTCTCAGGAGTAGCAAAGCTCAAAAGCACTGACaagaatcatga
aacgaagaagaagaacgaaaccaagaagaagaacgaaaccaagaggaaTT
CAAGCTCTGCCAAAGAAAAGAAAAAACTTTTTCGGCACCCAGCGGCGATA
AAAGCTAGGGCCGAATACGACGTCGTGATTGACGGGCTAAACGTCGGGAA
AGAGTACAGCGTCAGACGCAGATTTCGAACCAAAGGTATTGAACGTGCCT
TAGAATACTTTGAAAGGCAGGGCAAAAGACCGGTGGCAATACTTCCCAAT
GATTTTGGAGGCGGTGACGACCCAAAGAGAATGAGGAAACTGGTTGATCA
AGGGCGTGTGTTAATGGTTGGAAAGAAAGTTAAGCACGAGAAATTCCACG
ACTACAACGTCATTTTGTACGGGGTCCGGAACAATGCGGCTATCATTTCG
AACAATAAGTATCGAGCGGCGCCTTACAACAAGCTGAAAATCGAACAGTA
CGTTTTACAGGACAAGTTCTTAGTTCCATGTGCGTTTATAAAACGCCAGT
TTATTCCAAATCCAGACCCCGCACACTTGGCCGATGTAATGAAATATACA
ACTCGAACTAGCCATCTAAAAGATGTTATGGGTTTACATGTTTAG
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