Gvermi6797.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6797.t1
Unique NameGvermi6797.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2327498..2328193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003284029.1
PFAMsRNase_Zc3h12a
Max annot lvl554915|Amoebozoa
Evalue9.78e-11
EggNOG OGsKOG3777@1|root,KOG3777@2759|Eukaryota,3X9FW@554915|Amoebozoa
DescriptionZc3h12a-like Ribonuclease NYN domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6797Gvermi6797Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2327498..2328193 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6797.t1.stop1Gvermi6797.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2327498..2327500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6797.t1.CDS1Gvermi6797.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2327498..2328193 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6797.t1.exon1Gvermi6797.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2327498..2328193 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6797.t1.start1Gvermi6797.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2328191..2328193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6797.t1Gvermi6797.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2327498..2328193 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6797.t1 ID=Gvermi6797.t1|Name=Gvermi6797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=232bp
MKNRHRLVPPKSMQGTIETAHLHPREQKQSKHLVQHTESSGRDMQDIAHH
RQMGSISTISDTPPNIVLDGQNIARFREFGVQRTLKRSISEPRPRIDAMQ
IKQALDFFVERGMKPVALLPQFVVDERRGPRFNNGSNRATGKDLQMIKKL
HERGLVFYTPGGTHDDYYIISFGMRNSIPIVSNDKYRKEKDRHRSQDQRR
QITIYLRDNLFEFAFRDGRFTCKLPRFFGNL*
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spliced messenger RNA

>Gvermi6797.t1 ID=Gvermi6797.t1|Name=Gvermi6797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=696bp|location=Sequence derived from alignment at ScGOVlb_88:2327498..2328193- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAATCGTCACCGGTTAGTGCCTCCCAAGTCTATGCAAGGTACAAT
TGAAACAGCTCATCTACACCCGCGTGAACAGAAACAATCGAAGCATTTGG
TTCAACATACGGAGAGTTCTGGCAGAGATATGCAGGACATTGCTCATCAT
CGACAGATGGGCTCTATATCTACGATTAGCGATACGCCTCCCAATATTGT
CCTTGATGGACAAAACATTGCACGTTTTCGCGAATTCGGTGTACAGAGAA
CATTGAAAAGATCGATTTCTGAACCGCGTCCTCGCATCGATGCAATGCAA
ATCAAACAGGCACTGGATTTCTTTGTTGAGAGAGGTATGAAACCCGTTGC
TCTTCTTCCTCAGTTTGTAGTTGATGAACGAAGAGGTCCACGATTTAACA
ACGGAAGCAATCGAGCCACAGGCAAAGACTTGCAGATGATCAAGAAGCTT
CATGAACGCGGCCTGGTATTTTACACGCCCGGTGGAACTCATGATGACTA
CTATATTATTTCGTTCGGAATGCGCAACAGTATCCCAATTGTTTCAAATG
ACAAGTACAGAAAAGAGAAAGATAGACATAGATCACAAGACCAGAGGAGA
CAAATAACAATTTACTTGCGGGACAACCTCTTCGAGTTTGCTTTCCGAGA
TGGTCGTTTCACGTGCAAACTGCCCCGATTTTTCGGTAATCTTTAA
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protein sequence of Gvermi6797.t1

>Gvermi6797.t1 ID=Gvermi6797.t1|Name=Gvermi6797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=232bp
MKNRHRLVPPKSMQGTIETAHLHPREQKQSKHLVQHTESSGRDMQDIAHH
RQMGSISTISDTPPNIVLDGQNIARFREFGVQRTLKRSISEPRPRIDAMQ
IKQALDFFVERGMKPVALLPQFVVDERRGPRFNNGSNRATGKDLQMIKKL
HERGLVFYTPGGTHDDYYIISFGMRNSIPIVSNDKYRKEKDRHRSQDQRR
QITIYLRDNLFEFAFRDGRFTCKLPRFFGNL*
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mRNA from alignment at ScGOVlb_88:2327498..2328193-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6797.t1 ID=Gvermi6797.t1|Name=Gvermi6797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=696bp|location=Sequence derived from alignment at ScGOVlb_88:2327498..2328193- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAATCGTCACCGGTTAGTGCCTCCCAAGTCTATGCAAGGTACAAT
TGAAACAGCTCATCTACACCCGCGTGAACAGAAACAATCGAAGCATTTGG
TTCAACATACGGAGAGTTCTGGCAGAGATATGCAGGACATTGCTCATCAT
CGACAGATGGGCTCTATATCTACGATTAGCGATACGCCTCCCAATATTGT
CCTTGATGGACAAAACATTGCACGTTTTCGCGAATTCGGTGTACAGAGAA
CATTGAAAAGATCGATTTCTGAACCGCGTCCTCGCATCGATGCAATGCAA
ATCAAACAGGCACTGGATTTCTTTGTTGAGAGAGGTATGAAACCCGTTGC
TCTTCTTCCTCAGTTTGTAGTTGATGAACGAAGAGGTCCACGATTTAACA
ACGGAAGCAATCGAGCCACAGGCAAAGACTTGCAGATGATCAAGAAGCTT
CATGAACGCGGCCTGGTATTTTACACGCCCGGTGGAACTCATGATGACTA
CTATATTATTTCGTTCGGAATGCGCAACAGTATCCCAATTGTTTCAAATG
ACAAGTACAGAAAAGAGAAAGATAGACATAGATCACAAGACCAGAGGAGA
CAAATAACAATTTACTTGCGGGACAACCTCTTCGAGTTTGCTTTCCGAGA
TGGTCGTTTCACGTGCAAACTGCCCCGATTTTTCGGTAATCTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2327498..2328193-

>Gvermi6797.t1 ID=Gvermi6797.t1|Name=Gvermi6797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=696bp|location=Sequence derived from alignment at ScGOVlb_88:2327498..2328193- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAATCGTCACCGGTTAGTGCCTCCCAAGTCTATGCAAGGTACAAT
TGAAACAGCTCATCTACACCCGCGTGAACAGAAACAATCGAAGCATTTGG
TTCAACATACGGAGAGTTCTGGCAGAGATATGCAGGACATTGCTCATCAT
CGACAGATGGGCTCTATATCTACGATTAGCGATACGCCTCCCAATATTGT
CCTTGATGGACAAAACATTGCACGTTTTCGCGAATTCGGTGTACAGAGAA
CATTGAAAAGATCGATTTCTGAACCGCGTCCTCGCATCGATGCAATGCAA
ATCAAACAGGCACTGGATTTCTTTGTTGAGAGAGGTATGAAACCCGTTGC
TCTTCTTCCTCAGTTTGTAGTTGATGAACGAAGAGGTCCACGATTTAACA
ACGGAAGCAATCGAGCCACAGGCAAAGACTTGCAGATGATCAAGAAGCTT
CATGAACGCGGCCTGGTATTTTACACGCCCGGTGGAACTCATGATGACTA
CTATATTATTTCGTTCGGAATGCGCAACAGTATCCCAATTGTTTCAAATG
ACAAGTACAGAAAAGAGAAAGATAGACATAGATCACAAGACCAGAGGAGA
CAAATAACAATTTACTTGCGGGACAACCTCTTCGAGTTTGCTTTCCGAGA
TGGTCGTTTCACGTGCAAACTGCCCCGATTTTTCGGTAATCTTTAA
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