Gvermi6796.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6796.t1
Unique NameGvermi6796.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length405
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2324856..2326070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO98729
Max annot lvl3041|Chlorophyta
Evalue2.64e-41
EggNOG OGs28JNB@1|root,2QS1G@2759|Eukaryota,37R2Z@33090|Viridiplantae,34I8Q@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6796Gvermi6796Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2324856..2326070 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6796.t1.stop1Gvermi6796.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2324856..2324858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6796.t1.CDS1Gvermi6796.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2324856..2326070 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6796.t1.exon1Gvermi6796.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2324856..2326070 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6796.t1.start1Gvermi6796.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2326068..2326070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6796.t1Gvermi6796.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2324856..2326070 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6796.t1 ID=Gvermi6796.t1|Name=Gvermi6796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=405bp
MLMRWMHLITGLSNDGLQASANFQPFGVLDRRPSTTMFYARIISGTIAFT
AFIISLSFAGLPVPDSSYLNAEYVTALGQQPLASAQKPVFVPLLPLNGSR
HITHDGTELVFQRANNPVGTILLLHGCSHSATDWFPSSALCRECIGLPEE
MKITHHSLLRGYSVIAVSSTDRKRKCWQTHPEARIGADYDRIDSALNVTR
ELDVYNPERPLFAVGVSSGGMFASSLPLRSPVMAVNSIVSSSVIGVWADN
FAVKEITYVPHVFTHMAYRDGRTAKMVAFSMSKLLNLGVPCTEFRVDPKP
VTPQFLFQAIPHLDHSLASEIVTALNSEGHLDSVWRLKSNPRVSSWRNAV
QHLQSRMDDLLVADASPLSEELNRAWATHEITSEYFDQTLEFFEKTLRVS
RHIS*
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spliced messenger RNA

>Gvermi6796.t1 ID=Gvermi6796.t1|Name=Gvermi6796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at ScGOVlb_88:2324856..2326070- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGATGCGGTGGATGCATCTCATAACCGGACTGTCAAATGACGGTCT
ACAAGCAAGTGCAAACTTTCAACCATTTGGAGTTTTGGACCGCCGGCCCT
CCACAACAATGTTCTACGCACGTATTATCTCAGGCACAATAGCATTCACA
GCATTTATCATTAGTCTTTCTTTTGCTGGACTTCCTGTCCCTGATAGTTC
GTATCTGAACGCGGAATATGTCACAGCCTTAGGTCAGCAACCTCTTGCGA
GCGCCCAAAAGCCAGTATTCGTACCTCTATTACCTTTGAACGGTAGTAGA
CATATAACACACGATGGAACGGAATTAGTGTTCCAGAGGGCCAATAATCC
TGTGGGTACTATTCTCCTTCTTCACGGCTGTTCACATTCTGCTACTGATT
GGTTTCCATCGTCAGCATTATGCCGAGAATGTATTGGACTTCCAGAAGAA
ATGAAGATTACACACCACTCTTTGCTTCGAGGGTATTCGGTTATTGCAGT
TTCTTCCACCGATCGCAAACGCAAATGTTGGCAAACTCATCCGGAGGCTC
GAATAGGAGCCGACTATGATAGAATCGATTCCGCTTTAAACGTTACAAGG
GAGCTTGACGTCTACAATCCAGAGAGACCGTTGTTTGCTGTTGGTGTTTC
ATCAGGAGGAATGTTCGCTTCCTCGCTTCCTCTTCGTTCTCCTGTGATGG
CGGTCAACTCAATTGTTTCGTCGTCCGTCATAGGGGTTTGGGCCGATAAT
TTCGCCGTCAAAGAAATCACTTACGTTCCACATGTGTTTACCCACATGGC
CTACCGAGATGGACGAACTGCAAAGATGGTTGCCTTCTCGATGTCAAAGT
TATTAAATTTGGGAGTTCCATGCACGGAGTTCAGAGTAGATCCCAAACCA
GTGACACCTCAATTCCTATTCCAGGCAATTCCGCATCTAGACCATTCTCT
CGCTTCTGAAATTGTGACTGCATTGAATTCTGAGGGACACTTGGATTCGG
TGTGGCGTCTGAAATCTAATCCCAGGGTCTCATCTTGGAGAAATGCTGTT
CAGCATTTGCAAAGCAGAATGGATGATTTACTTGTTGCTGATGCTTCCCC
ATTATCGGAGGAATTAAACCGAGCATGGGCAACACACGAAATTACTTCAG
AGTACTTTGATCAAACACTTGAGTTCTTTGAAAAGACCCTGAGGGTTTCT
CGTCATATATCGTAG
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protein sequence of Gvermi6796.t1

>Gvermi6796.t1 ID=Gvermi6796.t1|Name=Gvermi6796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=405bp
MLMRWMHLITGLSNDGLQASANFQPFGVLDRRPSTTMFYARIISGTIAFT
AFIISLSFAGLPVPDSSYLNAEYVTALGQQPLASAQKPVFVPLLPLNGSR
HITHDGTELVFQRANNPVGTILLLHGCSHSATDWFPSSALCRECIGLPEE
MKITHHSLLRGYSVIAVSSTDRKRKCWQTHPEARIGADYDRIDSALNVTR
ELDVYNPERPLFAVGVSSGGMFASSLPLRSPVMAVNSIVSSSVIGVWADN
FAVKEITYVPHVFTHMAYRDGRTAKMVAFSMSKLLNLGVPCTEFRVDPKP
VTPQFLFQAIPHLDHSLASEIVTALNSEGHLDSVWRLKSNPRVSSWRNAV
QHLQSRMDDLLVADASPLSEELNRAWATHEITSEYFDQTLEFFEKTLRVS
RHIS*
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mRNA from alignment at ScGOVlb_88:2324856..2326070-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6796.t1 ID=Gvermi6796.t1|Name=Gvermi6796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at ScGOVlb_88:2324856..2326070- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGATGCGGTGGATGCATCTCATAACCGGACTGTCAAATGACGGTCT
ACAAGCAAGTGCAAACTTTCAACCATTTGGAGTTTTGGACCGCCGGCCCT
CCACAACAATGTTCTACGCACGTATTATCTCAGGCACAATAGCATTCACA
GCATTTATCATTAGTCTTTCTTTTGCTGGACTTCCTGTCCCTGATAGTTC
GTATCTGAACGCGGAATATGTCACAGCCTTAGGTCAGCAACCTCTTGCGA
GCGCCCAAAAGCCAGTATTCGTACCTCTATTACCTTTGAACGGTAGTAGA
CATATAACACACGATGGAACGGAATTAGTGTTCCAGAGGGCCAATAATCC
TGTGGGTACTATTCTCCTTCTTCACGGCTGTTCACATTCTGCTACTGATT
GGTTTCCATCGTCAGCATTATGCCGAGAATGTATTGGACTTCCAGAAGAA
ATGAAGATTACACACCACTCTTTGCTTCGAGGGTATTCGGTTATTGCAGT
TTCTTCCACCGATCGCAAACGCAAATGTTGGCAAACTCATCCGGAGGCTC
GAATAGGAGCCGACTATGATAGAATCGATTCCGCTTTAAACGTTACAAGG
GAGCTTGACGTCTACAATCCAGAGAGACCGTTGTTTGCTGTTGGTGTTTC
ATCAGGAGGAATGTTCGCTTCCTCGCTTCCTCTTCGTTCTCCTGTGATGG
CGGTCAACTCAATTGTTTCGTCGTCCGTCATAGGGGTTTGGGCCGATAAT
TTCGCCGTCAAAGAAATCACTTACGTTCCACATGTGTTTACCCACATGGC
CTACCGAGATGGACGAACTGCAAAGATGGTTGCCTTCTCGATGTCAAAGT
TATTAAATTTGGGAGTTCCATGCACGGAGTTCAGAGTAGATCCCAAACCA
GTGACACCTCAATTCCTATTCCAGGCAATTCCGCATCTAGACCATTCTCT
CGCTTCTGAAATTGTGACTGCATTGAATTCTGAGGGACACTTGGATTCGG
TGTGGCGTCTGAAATCTAATCCCAGGGTCTCATCTTGGAGAAATGCTGTT
CAGCATTTGCAAAGCAGAATGGATGATTTACTTGTTGCTGATGCTTCCCC
ATTATCGGAGGAATTAAACCGAGCATGGGCAACACACGAAATTACTTCAG
AGTACTTTGATCAAACACTTGAGTTCTTTGAAAAGACCCTGAGGGTTTCT
CGTCATATATCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2324856..2326070-

>Gvermi6796.t1 ID=Gvermi6796.t1|Name=Gvermi6796.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1215bp|location=Sequence derived from alignment at ScGOVlb_88:2324856..2326070- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGATGCGGTGGATGCATCTCATAACCGGACTGTCAAATGACGGTCT
ACAAGCAAGTGCAAACTTTCAACCATTTGGAGTTTTGGACCGCCGGCCCT
CCACAACAATGTTCTACGCACGTATTATCTCAGGCACAATAGCATTCACA
GCATTTATCATTAGTCTTTCTTTTGCTGGACTTCCTGTCCCTGATAGTTC
GTATCTGAACGCGGAATATGTCACAGCCTTAGGTCAGCAACCTCTTGCGA
GCGCCCAAAAGCCAGTATTCGTACCTCTATTACCTTTGAACGGTAGTAGA
CATATAACACACGATGGAACGGAATTAGTGTTCCAGAGGGCCAATAATCC
TGTGGGTACTATTCTCCTTCTTCACGGCTGTTCACATTCTGCTACTGATT
GGTTTCCATCGTCAGCATTATGCCGAGAATGTATTGGACTTCCAGAAGAA
ATGAAGATTACACACCACTCTTTGCTTCGAGGGTATTCGGTTATTGCAGT
TTCTTCCACCGATCGCAAACGCAAATGTTGGCAAACTCATCCGGAGGCTC
GAATAGGAGCCGACTATGATAGAATCGATTCCGCTTTAAACGTTACAAGG
GAGCTTGACGTCTACAATCCAGAGAGACCGTTGTTTGCTGTTGGTGTTTC
ATCAGGAGGAATGTTCGCTTCCTCGCTTCCTCTTCGTTCTCCTGTGATGG
CGGTCAACTCAATTGTTTCGTCGTCCGTCATAGGGGTTTGGGCCGATAAT
TTCGCCGTCAAAGAAATCACTTACGTTCCACATGTGTTTACCCACATGGC
CTACCGAGATGGACGAACTGCAAAGATGGTTGCCTTCTCGATGTCAAAGT
TATTAAATTTGGGAGTTCCATGCACGGAGTTCAGAGTAGATCCCAAACCA
GTGACACCTCAATTCCTATTCCAGGCAATTCCGCATCTAGACCATTCTCT
CGCTTCTGAAATTGTGACTGCATTGAATTCTGAGGGACACTTGGATTCGG
TGTGGCGTCTGAAATCTAATCCCAGGGTCTCATCTTGGAGAAATGCTGTT
CAGCATTTGCAAAGCAGAATGGATGATTTACTTGTTGCTGATGCTTCCCC
ATTATCGGAGGAATTAAACCGAGCATGGGCAACACACGAAATTACTTCAG
AGTACTTTGATCAAACACTTGAGTTCTTTGAAAAGACCCTGAGGGTTTCT
CGTCATATATCGTAG
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