Gvermi6794.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6794.t1
Unique NameGvermi6794.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length567
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2321359..2323133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog56110.Oscil6304_2815
PFAMsCalx-beta,DUF4114,P_proprotein,Peptidase_S8,SBBP
Max annot lvl1117|Cyanobacteria
Evalue2.65e-14
EggNOG OGsCOG1404@1|root,COG1520@1|root,COG2931@1|root,COG4733@1|root,COG4935@1|root,COG1404@2|Bacteria,COG1520@2|Bacteria,COG2931@2|Bacteria,COG4733@2|Bacteria,COG4935@2|Bacteria,1G342@1117|Cyanobacteria,1HH6R@1150|Oscillatoriales
DescriptionBeta-propeller repeat
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6794Gvermi6794Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2321359..2323133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6794.t1Gvermi6794.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2321359..2323133 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6794.t1.start1Gvermi6794.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2321359..2321361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6794.t1.CDS1Gvermi6794.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2321359..2321374 +
Gvermi6794.t1.CDS2Gvermi6794.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2321449..2323133 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6794.t1.exon1Gvermi6794.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2321359..2321374 +
Gvermi6794.t1.exon2Gvermi6794.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2321449..2323133 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6794.t1.intron1Gvermi6794.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2321375..2321448 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6794.t1.stop1Gvermi6794.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2323131..2323133 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6794.t1 ID=Gvermi6794.t1|Name=Gvermi6794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=567bp
MNTSSGTYSTELSIRCPITKVAKIGVVFIQNFCIVLSVNFDTTTQARGES
SMPGVFVPIAYIGNDSRSNDEPVVLEVRFDDSVFVGGTTSPFERRSESDL
GVPRSQGLRREDAFIAKILGKRRTIEWVYRIGTSGEDRLQTMVLSEDGRY
LYVAGRTFGQFPGTPNKGQADIFIIKYDVGGNGLDEVWSTPLVVGSIASE
TVTRLKIDPANDTIIYATGFTTGNLFQGRPQSGNGLSDVILFSFSAFDGS
LLWGTQFGTDFADSGIGIIVSNEENGPMFVGGITERRIGQYTFGNFHLYK
FSRTGNTLGSLLLRSYSREQLVGFQRHPMLPSSLVALGSSWLDIRNGYDV
FVKKVISGFDLRDIGYSEVDIDDVGEGEYTVRLQSADRSHDYASGLIIDN
QTGRLIISGYTAGSFENNTVNNGVVAPFIASVNPLNVSAYEAVQLELVGV
DSWVEIAAIGMTLDRNGVYYAAKEKNESSNQFHTVMGSFGFPSSWKNSIE
IRPSPPPSPSPSPRPGDGTSSSLKLSPFVIAGIACAGVVGALLVFWIITM
LRRCRKTPGFRSHTHA*
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spliced messenger RNA

>Gvermi6794.t1 ID=Gvermi6794.t1|Name=Gvermi6794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at ScGOVlb_88:2321359..2323133+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACTTCAAGCGGCACGTATTCCACAGAACTATCGATCCGATGTCC
CATCACCAAAGTAGCAAAGATTGGAGTTGTCTTCATACAGAATTTCTGCA
TCGTACTTTCTGTGAATTTCGACACTACTACCCAAGCGAGAGGGGAATCA
AGTATGCCAGGAGTGTTTGTTCCGATTGCCTACATTGGTAATGATTCGAG
AAGCAACGACGAGCCTGTTGTTCTTGAAGTAAGATTTGATGATTCTGTTT
TTGTCGGAGGAACTACTTCTCCCTTCGAACGACGTTCCGAGAGCGACCTG
GGTGTTCCTCGTTCGCAAGGTTTGAGGAGAGAAGATGCTTTTATTGCAAA
AATCCTAGGGAAAAGAAGGACGATAGAGTGGGTCTATCGCATTGGGACCT
CCGGAGAAGACAGGCTGCAAACCATGGTTCTCAGTGAGGACGGGAGATAT
CTTTACGTAGCTGGGAGAACGTTTGGCCAATTTCCTGGCACACCTAACAA
AGGCCAGGCGGATATTTTCATCATCAAGTACGATGTTGGCGGAAACGGGC
TCGATGAGGTGTGGTCAACTCCGCTGGTGGTAGGATCGATAGCGTCAGAA
ACTGTAACTCGCTTGAAAATAGACCCTGCGAATGACACAATCATCTACGC
TACAGGCTTCACAACCGGGAATTTGTTTCAGGGTCGCCCCCAAAGCGGCA
ACGGACTATCAGATGTTATTCTTTTCTCATTTTCCGCTTTTGATGGGTCT
TTGCTGTGGGGTACGCAGTTCGGAACAGATTTCGCTGATAGCGGAATCGG
TATCATAGTCTCCAACGAAGAAAACGGTCCAATGTTTGTTGGAGGGATAA
CCGAGAGACGTATTGGTCAGTATACTTTCGGGAATTTCCATCTGTACAAG
TTTTCGAGAACTGGGAATACCCTGGGAAGTTTGCTTCTTCGTTCGTACTC
TCGGGAACAATTGGTGGGCTTCCAAAGACACCCCATGCTTCCAAGCTCCC
TGGTTGCACTAGGATCATCGTGGTTAGACATACGAAATGGGTACGACGTG
TTTGTCAAAAAAGTCATTAGTGGGTTTGACCTGCGCGATATAGGGTATTC
AGAGGTTGATATAGATGATGTGGGAGAGGGTGAGTACACAGTTCGACTGC
AATCAGCCGACCGAAGTCATGATTACGCATCCGGACTGATTATAGATAAT
CAAACCGGCCGGCTTATCATATCAGGGTATACAGCTGGATCCTTTGAGAA
CAACACGGTTAATAATGGCGTAGTAGCACCCTTCATTGCTTCTGTCAATC
CTTTAAACGTCTCTGCATATGAAGCAGTGCAGCTGGAATTGGTTGGGGTA
GACAGTTGGGTAGAAATCGCTGCTATCGGAATGACGTTGGACCGCAACGG
AGTATACTATGCTGCAAAAGAGAAAAATGAGAGCAGCAACCAATTTCACA
CGGTGATGGGATCGTTTGGGTTCCCAAGTTCCTGGAAGAACTCCATCGAA
ATTCGCccatcaccacctccaagtccatcgccctctccGAGACCGGGGGA
TGGCACATCTTCATCGCTCAAGCTCTCGCCGTTTGTCATCGCCGGCATCG
CTTGCGCTGGAGTTGTAGGTGCTTTACTTGTGTTTTGGATAATCACAATG
TTACGGAGATGCAGAAAGACGCCAGGCTTTAGAAGCCATACACATGCATA
A
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protein sequence of Gvermi6794.t1

>Gvermi6794.t1 ID=Gvermi6794.t1|Name=Gvermi6794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=567bp
MNTSSGTYSTELSIRCPITKVAKIGVVFIQNFCIVLSVNFDTTTQARGES
SMPGVFVPIAYIGNDSRSNDEPVVLEVRFDDSVFVGGTTSPFERRSESDL
GVPRSQGLRREDAFIAKILGKRRTIEWVYRIGTSGEDRLQTMVLSEDGRY
LYVAGRTFGQFPGTPNKGQADIFIIKYDVGGNGLDEVWSTPLVVGSIASE
TVTRLKIDPANDTIIYATGFTTGNLFQGRPQSGNGLSDVILFSFSAFDGS
LLWGTQFGTDFADSGIGIIVSNEENGPMFVGGITERRIGQYTFGNFHLYK
FSRTGNTLGSLLLRSYSREQLVGFQRHPMLPSSLVALGSSWLDIRNGYDV
FVKKVISGFDLRDIGYSEVDIDDVGEGEYTVRLQSADRSHDYASGLIIDN
QTGRLIISGYTAGSFENNTVNNGVVAPFIASVNPLNVSAYEAVQLELVGV
DSWVEIAAIGMTLDRNGVYYAAKEKNESSNQFHTVMGSFGFPSSWKNSIE
IRPSPPPSPSPSPRPGDGTSSSLKLSPFVIAGIACAGVVGALLVFWIITM
LRRCRKTPGFRSHTHA*
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mRNA from alignment at ScGOVlb_88:2321359..2323133+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6794.t1 ID=Gvermi6794.t1|Name=Gvermi6794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1775bp|location=Sequence derived from alignment at ScGOVlb_88:2321359..2323133+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACTTCAAGCGGTAAGCACAATTCATTCGGCAAGCTGAACTCCCC
ACAAACAGATGTCTGACGAAACCTTCATCAAATTCGCAAGGCACGTATTC
CACAGAACTATCGATCCGATGTCCCATCACCAAAGTAGCAAAGATTGGAG
TTGTCTTCATACAGAATTTCTGCATCGTACTTTCTGTGAATTTCGACACT
ACTACCCAAGCGAGAGGGGAATCAAGTATGCCAGGAGTGTTTGTTCCGAT
TGCCTACATTGGTAATGATTCGAGAAGCAACGACGAGCCTGTTGTTCTTG
AAGTAAGATTTGATGATTCTGTTTTTGTCGGAGGAACTACTTCTCCCTTC
GAACGACGTTCCGAGAGCGACCTGGGTGTTCCTCGTTCGCAAGGTTTGAG
GAGAGAAGATGCTTTTATTGCAAAAATCCTAGGGAAAAGAAGGACGATAG
AGTGGGTCTATCGCATTGGGACCTCCGGAGAAGACAGGCTGCAAACCATG
GTTCTCAGTGAGGACGGGAGATATCTTTACGTAGCTGGGAGAACGTTTGG
CCAATTTCCTGGCACACCTAACAAAGGCCAGGCGGATATTTTCATCATCA
AGTACGATGTTGGCGGAAACGGGCTCGATGAGGTGTGGTCAACTCCGCTG
GTGGTAGGATCGATAGCGTCAGAAACTGTAACTCGCTTGAAAATAGACCC
TGCGAATGACACAATCATCTACGCTACAGGCTTCACAACCGGGAATTTGT
TTCAGGGTCGCCCCCAAAGCGGCAACGGACTATCAGATGTTATTCTTTTC
TCATTTTCCGCTTTTGATGGGTCTTTGCTGTGGGGTACGCAGTTCGGAAC
AGATTTCGCTGATAGCGGAATCGGTATCATAGTCTCCAACGAAGAAAACG
GTCCAATGTTTGTTGGAGGGATAACCGAGAGACGTATTGGTCAGTATACT
TTCGGGAATTTCCATCTGTACAAGTTTTCGAGAACTGGGAATACCCTGGG
AAGTTTGCTTCTTCGTTCGTACTCTCGGGAACAATTGGTGGGCTTCCAAA
GACACCCCATGCTTCCAAGCTCCCTGGTTGCACTAGGATCATCGTGGTTA
GACATACGAAATGGGTACGACGTGTTTGTCAAAAAAGTCATTAGTGGGTT
TGACCTGCGCGATATAGGGTATTCAGAGGTTGATATAGATGATGTGGGAG
AGGGTGAGTACACAGTTCGACTGCAATCAGCCGACCGAAGTCATGATTAC
GCATCCGGACTGATTATAGATAATCAAACCGGCCGGCTTATCATATCAGG
GTATACAGCTGGATCCTTTGAGAACAACACGGTTAATAATGGCGTAGTAG
CACCCTTCATTGCTTCTGTCAATCCTTTAAACGTCTCTGCATATGAAGCA
GTGCAGCTGGAATTGGTTGGGGTAGACAGTTGGGTAGAAATCGCTGCTAT
CGGAATGACGTTGGACCGCAACGGAGTATACTATGCTGCAAAAGAGAAAA
ATGAGAGCAGCAACCAATTTCACACGGTGATGGGATCGTTTGGGTTCCCA
AGTTCCTGGAAGAACTCCATCGAAATTCGCccatcaccacctccaagtcc
atcgccctctccGAGACCGGGGGATGGCACATCTTCATCGCTCAAGCTCT
CGCCGTTTGTCATCGCCGGCATCGCTTGCGCTGGAGTTGTAGGTGCTTTA
CTTGTGTTTTGGATAATCACAATGTTACGGAGATGCAGAAAGACGCCAGG
CTTTAGAAGCCATACACATGCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2321359..2323133+

>Gvermi6794.t1 ID=Gvermi6794.t1|Name=Gvermi6794.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1701bp|location=Sequence derived from alignment at ScGOVlb_88:2321359..2323133+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACTTCAAGCGGCACGTATTCCACAGAACTATCGATCCGATGTCC
CATCACCAAAGTAGCAAAGATTGGAGTTGTCTTCATACAGAATTTCTGCA
TCGTACTTTCTGTGAATTTCGACACTACTACCCAAGCGAGAGGGGAATCA
AGTATGCCAGGAGTGTTTGTTCCGATTGCCTACATTGGTAATGATTCGAG
AAGCAACGACGAGCCTGTTGTTCTTGAAGTAAGATTTGATGATTCTGTTT
TTGTCGGAGGAACTACTTCTCCCTTCGAACGACGTTCCGAGAGCGACCTG
GGTGTTCCTCGTTCGCAAGGTTTGAGGAGAGAAGATGCTTTTATTGCAAA
AATCCTAGGGAAAAGAAGGACGATAGAGTGGGTCTATCGCATTGGGACCT
CCGGAGAAGACAGGCTGCAAACCATGGTTCTCAGTGAGGACGGGAGATAT
CTTTACGTAGCTGGGAGAACGTTTGGCCAATTTCCTGGCACACCTAACAA
AGGCCAGGCGGATATTTTCATCATCAAGTACGATGTTGGCGGAAACGGGC
TCGATGAGGTGTGGTCAACTCCGCTGGTGGTAGGATCGATAGCGTCAGAA
ACTGTAACTCGCTTGAAAATAGACCCTGCGAATGACACAATCATCTACGC
TACAGGCTTCACAACCGGGAATTTGTTTCAGGGTCGCCCCCAAAGCGGCA
ACGGACTATCAGATGTTATTCTTTTCTCATTTTCCGCTTTTGATGGGTCT
TTGCTGTGGGGTACGCAGTTCGGAACAGATTTCGCTGATAGCGGAATCGG
TATCATAGTCTCCAACGAAGAAAACGGTCCAATGTTTGTTGGAGGGATAA
CCGAGAGACGTATTGGTCAGTATACTTTCGGGAATTTCCATCTGTACAAG
TTTTCGAGAACTGGGAATACCCTGGGAAGTTTGCTTCTTCGTTCGTACTC
TCGGGAACAATTGGTGGGCTTCCAAAGACACCCCATGCTTCCAAGCTCCC
TGGTTGCACTAGGATCATCGTGGTTAGACATACGAAATGGGTACGACGTG
TTTGTCAAAAAAGTCATTAGTGGGTTTGACCTGCGCGATATAGGGTATTC
AGAGGTTGATATAGATGATGTGGGAGAGGGTGAGTACACAGTTCGACTGC
AATCAGCCGACCGAAGTCATGATTACGCATCCGGACTGATTATAGATAAT
CAAACCGGCCGGCTTATCATATCAGGGTATACAGCTGGATCCTTTGAGAA
CAACACGGTTAATAATGGCGTAGTAGCACCCTTCATTGCTTCTGTCAATC
CTTTAAACGTCTCTGCATATGAAGCAGTGCAGCTGGAATTGGTTGGGGTA
GACAGTTGGGTAGAAATCGCTGCTATCGGAATGACGTTGGACCGCAACGG
AGTATACTATGCTGCAAAAGAGAAAAATGAGAGCAGCAACCAATTTCACA
CGGTGATGGGATCGTTTGGGTTCCCAAGTTCCTGGAAGAACTCCATCGAA
ATTCGCccatcaccacctccaagtccatcgccctctccGAGACCGGGGGA
TGGCACATCTTCATCGCTCAAGCTCTCGCCGTTTGTCATCGCCGGCATCG
CTTGCGCTGGAGTTGTAGGTGCTTTACTTGTGTTTTGGATAATCACAATG
TTACGGAGATGCAGAAAGACGCCAGGCTTTAGAAGCCATACACATGCATA
A
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