Gvermi6792.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6792.t1
Unique NameGvermi6792.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2318134..2318697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708456.1
PFAMsAcetyltransf_1
Max annot lvl2759|Eukaryota
KEGG koko:K20793
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004402,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008080,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010485,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0022402,GO:0031365,GO:0034085,GO:0034087,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048285,GO:0051276,GO:0051604,GO:0052858,GO:0061733,GO:0070601,GO:0071704,GO:0071840,GO:0071962,GO:0098813,GO:0140014,GO:1901564,GO:1903047
Evalue1.29e-46
EggNOG OGsCOG0456@1|root,KOG3138@2759|Eukaryota
EC2.3.1.258
Descriptionpeptide alpha-N-acetyltransferase activity
COG categoryK
BRITEko00000,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6792Gvermi6792Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2318134..2318697 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6792.t1.start1Gvermi6792.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2318134..2318136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6792.t1.CDS1Gvermi6792.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2318134..2318697 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6792.t1.exon1Gvermi6792.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2318134..2318697 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6792.t1.stop1Gvermi6792.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2318695..2318697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6792.t1Gvermi6792.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2318134..2318697 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6792.t1 ID=Gvermi6792.t1|Name=Gvermi6792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=188bp
MGETSCPPLPIVLRDVNEQNVNQLEALNFTIFPVKYNDVFYKQVLNAPQS
FVRLAYYNELLVGSVCCRKEPFNESHFVPEKQPPVRAGSAQSSDEQQASL
YIMTLGVLAPYRERGIGHRLISHVLELVESSSVCKDVVDIYLHLQEGNDD
ALRFYMRYGFEVTEYIQGYYKRLEPPNCYVVRKKVRR*
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spliced messenger RNA

>Gvermi6792.t1 ID=Gvermi6792.t1|Name=Gvermi6792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=564bp|location=Sequence derived from alignment at ScGOVlb_88:2318134..2318697+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGAAACCTCATGCCCGCCGCTTCCAATAGTGTTGCGTGACGTAAA
CGAGCAGAATGTTAATCAGCTTGAAGCTCTCAACTTCACAATTTTCCCAG
TCAAGTACAACGACGTGTTCTACAAACAAGTGTTAAATGCTCCGCAAAGT
TTCGTCAGACTTGCATACTATAATGAGTTACTGGTCGGAAGTGTTTGTTG
TCGAAAAGAACCATTCAACGAGTCTCACTTCGTTCCGGAGAAACAGCCGC
CAGTCAGAGCGGGATCTGCGCAATCATCCGATGAACAACAGGCCAGCTTG
TACATTATGACCCTTGGGGTGCTGGCCCCATATCGCGAGCGAGGCATTGG
CCATCGTCTCATATCACACGTTCTGGAGCTCGTGGAATCTTCTTCAGTGT
GCAAGGATGTGGTGGATATATATCTCCACTTGCAGGAAGGGAACGACGAT
GCTTTACGATTCTACATGAGATATGGCTTTGAGGTGACGGAGTATATTCA
AGGTTACTACAAGCGTCTCGAACCACCCAACTGCTATGTCGTCCGAAAGA
AAGTTAGAAGATAA
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protein sequence of Gvermi6792.t1

>Gvermi6792.t1 ID=Gvermi6792.t1|Name=Gvermi6792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=188bp
MGETSCPPLPIVLRDVNEQNVNQLEALNFTIFPVKYNDVFYKQVLNAPQS
FVRLAYYNELLVGSVCCRKEPFNESHFVPEKQPPVRAGSAQSSDEQQASL
YIMTLGVLAPYRERGIGHRLISHVLELVESSSVCKDVVDIYLHLQEGNDD
ALRFYMRYGFEVTEYIQGYYKRLEPPNCYVVRKKVRR*
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mRNA from alignment at ScGOVlb_88:2318134..2318697+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6792.t1 ID=Gvermi6792.t1|Name=Gvermi6792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=564bp|location=Sequence derived from alignment at ScGOVlb_88:2318134..2318697+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGAAACCTCATGCCCGCCGCTTCCAATAGTGTTGCGTGACGTAAA
CGAGCAGAATGTTAATCAGCTTGAAGCTCTCAACTTCACAATTTTCCCAG
TCAAGTACAACGACGTGTTCTACAAACAAGTGTTAAATGCTCCGCAAAGT
TTCGTCAGACTTGCATACTATAATGAGTTACTGGTCGGAAGTGTTTGTTG
TCGAAAAGAACCATTCAACGAGTCTCACTTCGTTCCGGAGAAACAGCCGC
CAGTCAGAGCGGGATCTGCGCAATCATCCGATGAACAACAGGCCAGCTTG
TACATTATGACCCTTGGGGTGCTGGCCCCATATCGCGAGCGAGGCATTGG
CCATCGTCTCATATCACACGTTCTGGAGCTCGTGGAATCTTCTTCAGTGT
GCAAGGATGTGGTGGATATATATCTCCACTTGCAGGAAGGGAACGACGAT
GCTTTACGATTCTACATGAGATATGGCTTTGAGGTGACGGAGTATATTCA
AGGTTACTACAAGCGTCTCGAACCACCCAACTGCTATGTCGTCCGAAAGA
AAGTTAGAAGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2318134..2318697+

>Gvermi6792.t1 ID=Gvermi6792.t1|Name=Gvermi6792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=564bp|location=Sequence derived from alignment at ScGOVlb_88:2318134..2318697+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGAAACCTCATGCCCGCCGCTTCCAATAGTGTTGCGTGACGTAAA
CGAGCAGAATGTTAATCAGCTTGAAGCTCTCAACTTCACAATTTTCCCAG
TCAAGTACAACGACGTGTTCTACAAACAAGTGTTAAATGCTCCGCAAAGT
TTCGTCAGACTTGCATACTATAATGAGTTACTGGTCGGAAGTGTTTGTTG
TCGAAAAGAACCATTCAACGAGTCTCACTTCGTTCCGGAGAAACAGCCGC
CAGTCAGAGCGGGATCTGCGCAATCATCCGATGAACAACAGGCCAGCTTG
TACATTATGACCCTTGGGGTGCTGGCCCCATATCGCGAGCGAGGCATTGG
CCATCGTCTCATATCACACGTTCTGGAGCTCGTGGAATCTTCTTCAGTGT
GCAAGGATGTGGTGGATATATATCTCCACTTGCAGGAAGGGAACGACGAT
GCTTTACGATTCTACATGAGATATGGCTTTGAGGTGACGGAGTATATTCA
AGGTTACTACAAGCGTCTCGAACCACCCAACTGCTATGTCGTCCGAAAGA
AAGTTAGAAGATAA
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