Gvermi6791.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6791.t1
Unique NameGvermi6791.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2314373..2315311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ13733
PFAMsCyclin
Max annot lvl35493|Streptophyta
Evalue4.25e-31
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota,37T29@33090|Viridiplantae,3GHQU@35493|Streptophyta
Descriptioncyclin-U4-1-like
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6791Gvermi6791Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2314373..2315311 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6791.t1.stop1Gvermi6791.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2314373..2314375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6791.t1.CDS1Gvermi6791.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2314373..2315311 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6791.t1.exon1Gvermi6791.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2314373..2315311 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6791.t1.start1Gvermi6791.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2315309..2315311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6791.t1Gvermi6791.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2314373..2315311 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6791.t1 ID=Gvermi6791.t1|Name=Gvermi6791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=313bp
MTVQISAKTVEPTPASPMQFTLITSRSALVSILSATIQAHVSANDQLPEP
PFDEMTVFHALEAPAIAVSEYVSRVSKYAFCSEACLVAAYHYITRAITKD
PKLALSSLSVHRLFITAIVLASKYYDDLSYNLVYYAKVGGLPHMELSNLE
MHMLHLLDFRLDIPAATFIEIESNLVSGLKVMAANASHAVVTDLVTQARN
ALLDPELHAIPFEHLPGEQPQKPTTTTPCFLPPPPVTSPAAVASVETSLS
RNSSLASVKDEELVQPPPSRRLSFTRSFMRRRSSKTFSKVSHSPISPDNS
YRQRARASLGVN*
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spliced messenger RNA

>Gvermi6791.t1 ID=Gvermi6791.t1|Name=Gvermi6791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=939bp|location=Sequence derived from alignment at ScGOVlb_88:2314373..2315311- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTGCAGATCTCCGCAAAAACTGTCGAGCCAACCCCCGCATCGCC
TATGCAGTTTACCCTGATCACCTCACGCTCAGCTCTGGTCTCTATTCTGT
CTGCCACCATCCAGGCTCACGTGTCTGCGAACGATCAACTTCCCGAGCCA
CCATTCGATGAAATGACCGTCTTCCATGCGCTGGAGGCCCCGGCTATCGC
CGTCTCTGAGTATGTCTCTCGTGTCTCCAAGTATGCGTTCTGCTCGGAGG
CTTGCCTTGTGGCGGCGTATCATTACATCACACGCGCCATCACTAAAGAT
CCCAAGTTGGCCCTCTCCTCCCTCAGTGTTCACCGCCTGTTCATCACCGC
TATCGTGCTGGCTTCGAAGTACTACGACGACCTGTCCTATAACTTGGTCT
ACTATGCCAAGGTCGGAGGTCTTCCGCACATGGAGCTCTCGAATTTGGAG
ATGCACATGCTTCACCTGCTCGACTTCCGGTTAGACATTCCGGCAGCCAC
GTTTATCGAAATCGAATCTAACCTCGTATCGGGCCTCAAGGTCATGGCCG
CGAACGCTTCACACGCCGTGGTCACTGACCTTGTGACTCAGGCCCGCAAT
GCCCTGCTCGACCCGGAGTTACACGCAATTCCTTTCGAGCATTTGCCTGG
GGAGCAACCGCAGAAGCCGACCACAACCACTCCTTGCTTCTTGCCGCCGC
CACCCGTCACTTCGCCTGCGGCTGTCGCCAGCGTGGAGACCTCCCTTTCG
AGAAACTCCTCCCTTGCGTCAGTGAAGGACGAGGAGCTCGTCCAACCGCC
ACCAAGCAGGAGGTTGTCGTTCACGAGAAGCTTCATGCGCCGGAGAAGCT
CGAAGACTTTCTCCAAGGTTTCGCACTCGCCTATATCTCCTGACAACTCG
TACAGACAGAGGGCGCGAGCTTCCCTGGGCGTGAATTGA
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protein sequence of Gvermi6791.t1

>Gvermi6791.t1 ID=Gvermi6791.t1|Name=Gvermi6791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=313bp
MTVQISAKTVEPTPASPMQFTLITSRSALVSILSATIQAHVSANDQLPEP
PFDEMTVFHALEAPAIAVSEYVSRVSKYAFCSEACLVAAYHYITRAITKD
PKLALSSLSVHRLFITAIVLASKYYDDLSYNLVYYAKVGGLPHMELSNLE
MHMLHLLDFRLDIPAATFIEIESNLVSGLKVMAANASHAVVTDLVTQARN
ALLDPELHAIPFEHLPGEQPQKPTTTTPCFLPPPPVTSPAAVASVETSLS
RNSSLASVKDEELVQPPPSRRLSFTRSFMRRRSSKTFSKVSHSPISPDNS
YRQRARASLGVN*
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mRNA from alignment at ScGOVlb_88:2314373..2315311-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6791.t1 ID=Gvermi6791.t1|Name=Gvermi6791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=939bp|location=Sequence derived from alignment at ScGOVlb_88:2314373..2315311- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGTGCAGATCTCCGCAAAAACTGTCGAGCCAACCCCCGCATCGCC
TATGCAGTTTACCCTGATCACCTCACGCTCAGCTCTGGTCTCTATTCTGT
CTGCCACCATCCAGGCTCACGTGTCTGCGAACGATCAACTTCCCGAGCCA
CCATTCGATGAAATGACCGTCTTCCATGCGCTGGAGGCCCCGGCTATCGC
CGTCTCTGAGTATGTCTCTCGTGTCTCCAAGTATGCGTTCTGCTCGGAGG
CTTGCCTTGTGGCGGCGTATCATTACATCACACGCGCCATCACTAAAGAT
CCCAAGTTGGCCCTCTCCTCCCTCAGTGTTCACCGCCTGTTCATCACCGC
TATCGTGCTGGCTTCGAAGTACTACGACGACCTGTCCTATAACTTGGTCT
ACTATGCCAAGGTCGGAGGTCTTCCGCACATGGAGCTCTCGAATTTGGAG
ATGCACATGCTTCACCTGCTCGACTTCCGGTTAGACATTCCGGCAGCCAC
GTTTATCGAAATCGAATCTAACCTCGTATCGGGCCTCAAGGTCATGGCCG
CGAACGCTTCACACGCCGTGGTCACTGACCTTGTGACTCAGGCCCGCAAT
GCCCTGCTCGACCCGGAGTTACACGCAATTCCTTTCGAGCATTTGCCTGG
GGAGCAACCGCAGAAGCCGACCACAACCACTCCTTGCTTCTTGCCGCCGC
CACCCGTCACTTCGCCTGCGGCTGTCGCCAGCGTGGAGACCTCCCTTTCG
AGAAACTCCTCCCTTGCGTCAGTGAAGGACGAGGAGCTCGTCCAACCGCC
ACCAAGCAGGAGGTTGTCGTTCACGAGAAGCTTCATGCGCCGGAGAAGCT
CGAAGACTTTCTCCAAGGTTTCGCACTCGCCTATATCTCCTGACAACTCG
TACAGACAGAGGGCGCGAGCTTCCCTGGGCGTGAATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2314373..2315311-

>Gvermi6791.t1 ID=Gvermi6791.t1|Name=Gvermi6791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=939bp|location=Sequence derived from alignment at ScGOVlb_88:2314373..2315311- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGTGCAGATCTCCGCAAAAACTGTCGAGCCAACCCCCGCATCGCC
TATGCAGTTTACCCTGATCACCTCACGCTCAGCTCTGGTCTCTATTCTGT
CTGCCACCATCCAGGCTCACGTGTCTGCGAACGATCAACTTCCCGAGCCA
CCATTCGATGAAATGACCGTCTTCCATGCGCTGGAGGCCCCGGCTATCGC
CGTCTCTGAGTATGTCTCTCGTGTCTCCAAGTATGCGTTCTGCTCGGAGG
CTTGCCTTGTGGCGGCGTATCATTACATCACACGCGCCATCACTAAAGAT
CCCAAGTTGGCCCTCTCCTCCCTCAGTGTTCACCGCCTGTTCATCACCGC
TATCGTGCTGGCTTCGAAGTACTACGACGACCTGTCCTATAACTTGGTCT
ACTATGCCAAGGTCGGAGGTCTTCCGCACATGGAGCTCTCGAATTTGGAG
ATGCACATGCTTCACCTGCTCGACTTCCGGTTAGACATTCCGGCAGCCAC
GTTTATCGAAATCGAATCTAACCTCGTATCGGGCCTCAAGGTCATGGCCG
CGAACGCTTCACACGCCGTGGTCACTGACCTTGTGACTCAGGCCCGCAAT
GCCCTGCTCGACCCGGAGTTACACGCAATTCCTTTCGAGCATTTGCCTGG
GGAGCAACCGCAGAAGCCGACCACAACCACTCCTTGCTTCTTGCCGCCGC
CACCCGTCACTTCGCCTGCGGCTGTCGCCAGCGTGGAGACCTCCCTTTCG
AGAAACTCCTCCCTTGCGTCAGTGAAGGACGAGGAGCTCGTCCAACCGCC
ACCAAGCAGGAGGTTGTCGTTCACGAGAAGCTTCATGCGCCGGAGAAGCT
CGAAGACTTTCTCCAAGGTTTCGCACTCGCCTATATCTCCTGACAACTCG
TACAGACAGAGGGCGCGAGCTTCCCTGGGCGTGAATTGA
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