Gvermi6786.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6786.t1
Unique NameGvermi6786.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length546
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2277985..2279622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6786Gvermi6786Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2277985..2279622 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6786.t1.stop1Gvermi6786.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2277985..2277987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6786.t1.CDS1Gvermi6786.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2277985..2279622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6786.t1.exon1Gvermi6786.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2277985..2279622 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6786.t1.start1Gvermi6786.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2279620..2279622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6786.t1Gvermi6786.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2277985..2279622 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6786.t1 ID=Gvermi6786.t1|Name=Gvermi6786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=546bp
MPRSSTKFQAPPSACIEEALVWLLGLSFGEHDDGVQRSLISRKLGEIINL
WASGLLAADFSAEEVENTFAAFSKLVQTDNVPDLINWSEISISDVDLLIH
IHWVRASRNMIDLPLPPAKPLETAIDSLTVALKLLDCIAAKDNRRSAAAN
TAPAHLLFSVLRLTISTEHEHNHRSSNVRVLCDQLLSHLNRMRRTGSKSH
LFSSLLSHILPLIRTAVGGDLSSFKAPYSVHQAAPASHVLHTLLCEVEDD
KLIESVNEIMPTLQTLVESVQEEIRIQALHSMSLLSSRLSVSAMEPTETS
KSLQASLAWGDVPTSMVAIPLLATFLPATKPKESRGEDYVKSVSKVIDIV
VRHMQKRSESPEANGHDLPDLTDAKAAIELSTFVPSLARDLLICRTDWII
ALCDFLQRLAVLLRRGSVPIEDVIRILAVLKDSIKWAWIRVDSFRREVFE
NCLSSIMETRSVSESFLIQTTARDVILLLGKCGQVERLLDMTAEVRTCAR
DYESLATAAEFCKDIEDIIAFEGEDNYNGTISAGTLVHRFFPELT*
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spliced messenger RNA

>Gvermi6786.t1 ID=Gvermi6786.t1|Name=Gvermi6786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at ScGOVlb_88:2277985..2279622- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGCAGCTCTACGAAGTTCCAGGCGCCTCCATCGGCCTGCATAGA
GGAGGCTCTGGTTTGGCTTCTCGGTCTGTCCTTTGGAGAACACGATGATG
GAGTACAACGTTCCCTTATTTCTCGTAAGCTTGGTGAAATAATCAATTTG
TGGGCTAGTGGATTACTAGCTGCAGATTTTTCAGCAGAAGAGGTTGAAAA
CACCTTCGCTGCGTTCTCGAAACTTGTTCAAACGGACAATGTTCCTGATC
TGATCAATTGGTCAGAGATATCTATTTCAGATGTCGATTTACTTATCCAT
ATTCATTGGGTTCGTGCTTCCCGGAACATGATTGATCTTCCCTTGCCTCC
GGCTAAGCCACTTGAGACCGCCATTGACTCACTCACTGTCGCCCTGAAGC
TCTTAGATTGCATTGCTGCGAAGGATAACCGACGTTCGGCTGCTGCCAAT
ACAGCCCCTGCGCATCTCCTTTTCTCAGTGTTACGTCTCACCATATCAAC
TGAACATGAGCACAACCACCGCAGTTCAAATGTTCGTGTTCTATGCGATC
AGTTACTCTCCCATTTAAATCGCATGCGTCGAACTGGAAGCAAATCTCAT
TTGTTCTCCTCTCTTCTTAGCCATATACTACCTTTGATTCGCACAGCTGT
GGGAGGCGATCTCAGTTCCTTTAAAGCTCCCTACAGCGTGCATCAGGCAG
CACCAGCTTCCCACGTGTTGCATACCCTGCTGTGTGAAGTAGAGGACGAT
AAGCTAATCGAAAGCGTGAACGAGATCATGCCAACCTTGCAGACATTGGT
TGAAAGTGTTCAGGAGGAAATACGAATACAAGCGTTACATTCTATGTCTC
TGCTCTCTTCTCGTCTTTCCGTTTCCGCAATGGAGCCAACCGAAACGTCA
AAGTCTTTGCAAGCTTCTCTCGCGTGGGGCGATGTTCCAACATCGATGGT
TGCTATCCCTTTGTTGGCTACTTTTTTACCAGCCACCAAACCTAAAGAGT
CGCGAGGAGAAGATTATGTGAAATCGGTTTCCAAGGTGATTGACATTGTG
GTGCGCCACATGCAGAAACGCAGTGAAAGTCCGGAAGCAAATGGTCACGA
CTTGCCAGACCTAACAGACGCAAAGGCTGCCATAGAATTGTCCACATTTG
TGCCGTCGCTGGCCCGAGACTTATTGATTTGTCGCACGGACTGGATCATA
GCTTTGTGTGATTTTCTCCAACGCTTGGCTGTTCTGCTCAGGCGCGGCTC
TGTACCAATAGAAGATGTCATACGAATCCTCGCAGTCCTTAAGGACTCCA
TCAAATGGGCCTGGATCCGGGTAGACTCATTCCGGAGAGAAGTGTTTGAA
AACTGCCTTTCATCAATTATGGAAACTAGAAGCGTTTCAGAGTCATTTTT
GATTCAGACTACCGCACGGGATGTCATTTTATTGCTTGGCAAATGTGGCC
AAGTAGAGCGATTACTGGACATGACCGCAGAAGTTCGAACGTGTGCAAGA
GACTACGAGAGCCTTGCGACGGCAGCAGAGTTCTGCAAGGATATTGAGGA
CATTATCGCTTTTGAAGGCGAAGACAATTACAATGGTACTATCAGCGCCG
GAACTCTGGTTCACAGATTTTTCCCAGAGCTCACATAG
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protein sequence of Gvermi6786.t1

>Gvermi6786.t1 ID=Gvermi6786.t1|Name=Gvermi6786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=546bp
MPRSSTKFQAPPSACIEEALVWLLGLSFGEHDDGVQRSLISRKLGEIINL
WASGLLAADFSAEEVENTFAAFSKLVQTDNVPDLINWSEISISDVDLLIH
IHWVRASRNMIDLPLPPAKPLETAIDSLTVALKLLDCIAAKDNRRSAAAN
TAPAHLLFSVLRLTISTEHEHNHRSSNVRVLCDQLLSHLNRMRRTGSKSH
LFSSLLSHILPLIRTAVGGDLSSFKAPYSVHQAAPASHVLHTLLCEVEDD
KLIESVNEIMPTLQTLVESVQEEIRIQALHSMSLLSSRLSVSAMEPTETS
KSLQASLAWGDVPTSMVAIPLLATFLPATKPKESRGEDYVKSVSKVIDIV
VRHMQKRSESPEANGHDLPDLTDAKAAIELSTFVPSLARDLLICRTDWII
ALCDFLQRLAVLLRRGSVPIEDVIRILAVLKDSIKWAWIRVDSFRREVFE
NCLSSIMETRSVSESFLIQTTARDVILLLGKCGQVERLLDMTAEVRTCAR
DYESLATAAEFCKDIEDIIAFEGEDNYNGTISAGTLVHRFFPELT*
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mRNA from alignment at ScGOVlb_88:2277985..2279622-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6786.t1 ID=Gvermi6786.t1|Name=Gvermi6786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at ScGOVlb_88:2277985..2279622- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCGCAGCTCTACGAAGTTCCAGGCGCCTCCATCGGCCTGCATAGA
GGAGGCTCTGGTTTGGCTTCTCGGTCTGTCCTTTGGAGAACACGATGATG
GAGTACAACGTTCCCTTATTTCTCGTAAGCTTGGTGAAATAATCAATTTG
TGGGCTAGTGGATTACTAGCTGCAGATTTTTCAGCAGAAGAGGTTGAAAA
CACCTTCGCTGCGTTCTCGAAACTTGTTCAAACGGACAATGTTCCTGATC
TGATCAATTGGTCAGAGATATCTATTTCAGATGTCGATTTACTTATCCAT
ATTCATTGGGTTCGTGCTTCCCGGAACATGATTGATCTTCCCTTGCCTCC
GGCTAAGCCACTTGAGACCGCCATTGACTCACTCACTGTCGCCCTGAAGC
TCTTAGATTGCATTGCTGCGAAGGATAACCGACGTTCGGCTGCTGCCAAT
ACAGCCCCTGCGCATCTCCTTTTCTCAGTGTTACGTCTCACCATATCAAC
TGAACATGAGCACAACCACCGCAGTTCAAATGTTCGTGTTCTATGCGATC
AGTTACTCTCCCATTTAAATCGCATGCGTCGAACTGGAAGCAAATCTCAT
TTGTTCTCCTCTCTTCTTAGCCATATACTACCTTTGATTCGCACAGCTGT
GGGAGGCGATCTCAGTTCCTTTAAAGCTCCCTACAGCGTGCATCAGGCAG
CACCAGCTTCCCACGTGTTGCATACCCTGCTGTGTGAAGTAGAGGACGAT
AAGCTAATCGAAAGCGTGAACGAGATCATGCCAACCTTGCAGACATTGGT
TGAAAGTGTTCAGGAGGAAATACGAATACAAGCGTTACATTCTATGTCTC
TGCTCTCTTCTCGTCTTTCCGTTTCCGCAATGGAGCCAACCGAAACGTCA
AAGTCTTTGCAAGCTTCTCTCGCGTGGGGCGATGTTCCAACATCGATGGT
TGCTATCCCTTTGTTGGCTACTTTTTTACCAGCCACCAAACCTAAAGAGT
CGCGAGGAGAAGATTATGTGAAATCGGTTTCCAAGGTGATTGACATTGTG
GTGCGCCACATGCAGAAACGCAGTGAAAGTCCGGAAGCAAATGGTCACGA
CTTGCCAGACCTAACAGACGCAAAGGCTGCCATAGAATTGTCCACATTTG
TGCCGTCGCTGGCCCGAGACTTATTGATTTGTCGCACGGACTGGATCATA
GCTTTGTGTGATTTTCTCCAACGCTTGGCTGTTCTGCTCAGGCGCGGCTC
TGTACCAATAGAAGATGTCATACGAATCCTCGCAGTCCTTAAGGACTCCA
TCAAATGGGCCTGGATCCGGGTAGACTCATTCCGGAGAGAAGTGTTTGAA
AACTGCCTTTCATCAATTATGGAAACTAGAAGCGTTTCAGAGTCATTTTT
GATTCAGACTACCGCACGGGATGTCATTTTATTGCTTGGCAAATGTGGCC
AAGTAGAGCGATTACTGGACATGACCGCAGAAGTTCGAACGTGTGCAAGA
GACTACGAGAGCCTTGCGACGGCAGCAGAGTTCTGCAAGGATATTGAGGA
CATTATCGCTTTTGAAGGCGAAGACAATTACAATGGTACTATCAGCGCCG
GAACTCTGGTTCACAGATTTTTCCCAGAGCTCACATAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2277985..2279622-

>Gvermi6786.t1 ID=Gvermi6786.t1|Name=Gvermi6786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1638bp|location=Sequence derived from alignment at ScGOVlb_88:2277985..2279622- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCGCAGCTCTACGAAGTTCCAGGCGCCTCCATCGGCCTGCATAGA
GGAGGCTCTGGTTTGGCTTCTCGGTCTGTCCTTTGGAGAACACGATGATG
GAGTACAACGTTCCCTTATTTCTCGTAAGCTTGGTGAAATAATCAATTTG
TGGGCTAGTGGATTACTAGCTGCAGATTTTTCAGCAGAAGAGGTTGAAAA
CACCTTCGCTGCGTTCTCGAAACTTGTTCAAACGGACAATGTTCCTGATC
TGATCAATTGGTCAGAGATATCTATTTCAGATGTCGATTTACTTATCCAT
ATTCATTGGGTTCGTGCTTCCCGGAACATGATTGATCTTCCCTTGCCTCC
GGCTAAGCCACTTGAGACCGCCATTGACTCACTCACTGTCGCCCTGAAGC
TCTTAGATTGCATTGCTGCGAAGGATAACCGACGTTCGGCTGCTGCCAAT
ACAGCCCCTGCGCATCTCCTTTTCTCAGTGTTACGTCTCACCATATCAAC
TGAACATGAGCACAACCACCGCAGTTCAAATGTTCGTGTTCTATGCGATC
AGTTACTCTCCCATTTAAATCGCATGCGTCGAACTGGAAGCAAATCTCAT
TTGTTCTCCTCTCTTCTTAGCCATATACTACCTTTGATTCGCACAGCTGT
GGGAGGCGATCTCAGTTCCTTTAAAGCTCCCTACAGCGTGCATCAGGCAG
CACCAGCTTCCCACGTGTTGCATACCCTGCTGTGTGAAGTAGAGGACGAT
AAGCTAATCGAAAGCGTGAACGAGATCATGCCAACCTTGCAGACATTGGT
TGAAAGTGTTCAGGAGGAAATACGAATACAAGCGTTACATTCTATGTCTC
TGCTCTCTTCTCGTCTTTCCGTTTCCGCAATGGAGCCAACCGAAACGTCA
AAGTCTTTGCAAGCTTCTCTCGCGTGGGGCGATGTTCCAACATCGATGGT
TGCTATCCCTTTGTTGGCTACTTTTTTACCAGCCACCAAACCTAAAGAGT
CGCGAGGAGAAGATTATGTGAAATCGGTTTCCAAGGTGATTGACATTGTG
GTGCGCCACATGCAGAAACGCAGTGAAAGTCCGGAAGCAAATGGTCACGA
CTTGCCAGACCTAACAGACGCAAAGGCTGCCATAGAATTGTCCACATTTG
TGCCGTCGCTGGCCCGAGACTTATTGATTTGTCGCACGGACTGGATCATA
GCTTTGTGTGATTTTCTCCAACGCTTGGCTGTTCTGCTCAGGCGCGGCTC
TGTACCAATAGAAGATGTCATACGAATCCTCGCAGTCCTTAAGGACTCCA
TCAAATGGGCCTGGATCCGGGTAGACTCATTCCGGAGAGAAGTGTTTGAA
AACTGCCTTTCATCAATTATGGAAACTAGAAGCGTTTCAGAGTCATTTTT
GATTCAGACTACCGCACGGGATGTCATTTTATTGCTTGGCAAATGTGGCC
AAGTAGAGCGATTACTGGACATGACCGCAGAAGTTCGAACGTGTGCAAGA
GACTACGAGAGCCTTGCGACGGCAGCAGAGTTCTGCAAGGATATTGAGGA
CATTATCGCTTTTGAAGGCGAAGACAATTACAATGGTACTATCAGCGCCG
GAACTCTGGTTCACAGATTTTTCCCAGAGCTCACATAG
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