Gvermi6785.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6785.t1
Unique Name	Gvermi6785.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	420

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2276049..2277308 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM166CT
Preferred name	PSY
PFAMs	SQS_PSY
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00362,RC00438,RC00439,RC00603,RC00604,RC01004,RC01101,RC02869
KEGG ko	ko:K01623,ko:K02291,ko:K17841
KEGG Reaction	R01068,R01070,R01829,R02065,R02568,R03824,R04218,R05341,R07270,R10177,R10508
KEGG Pathway	ko00010,ko00030,ko00051,ko00680,ko00710,ko00906,ko01062,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map00906,map01062,map01100,map01110,map01120,map01130,map01200,map01230
KEGG Module	M00001,M00003,M00097,M00165,M00167
GOs	GO:0003674,GO:0003824,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009975,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016740,GO:0016765,GO:0016767,GO:0016853,GO:0016860,GO:0042214,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045436,GO:0046148,GO:0046246,GO:0046905,GO:0071704,GO:1901576
Evalue	4.19e-129
EggNOG OGs	COG1562@1\|root,KOG1459@2759\|Eukaryota
EC	2.5.1.32,2.5.1.99,4.1.2.13,5.5.1.19
Description	farnesyl-diphosphate farnesyltransferase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006,ko03036,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6785	Gvermi6785	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2276049..2277308 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6785.t1.start1	Gvermi6785.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2276049..2276051 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6785.t1.CDS1	Gvermi6785.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2276049..2277308 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6785.t1.exon1	Gvermi6785.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2276049..2277308 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6785.t1.stop1	Gvermi6785.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2277306..2277308 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6785.t1	Gvermi6785.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2276049..2277308 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2276049..2277308+
coding sequence from alignment at ScGOVlb_88:2276049..2277308+

mRNA sequence

>Gvermi6785.t1 ID=Gvermi6785.t1|Name=Gvermi6785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=420bp
MVLDKPMNASNSVNWSKYQIESFDTMHTRLGIDKLWQPDTDITHAAKRNE
SKKRPHLPATTDENLHVAGDKLLSTQSVLPWDTTTGARGLSYLSRQLSFL
RKRQQMLKASYEECRRITEVFSKTFYLGTTFLSPEKRAAVWAIYAWCRRT
DDLVDGPRVQQRHDSLRAILGEWEQRLIAIFNGRARDSLDLALVDTIENY
PEVTISPFRDMIRGMIMDVDQSRFETFDDLYVYCYRVAGTVGLMTLPVMG
TLKSGREGLREAMGPALALGIGLQLTNILRDVGEDRLRGRIYLPLEDLRR
FKYTEEDLFNCVLDSRYRELMKFEIARARSYFKEARKGVHLLAEDSRLPV
QTSLDMYSQILDVLEENGYDNFNRRAYVSKTQKLLTLPVSYLRCRTSPLW
KPLRISSEFLLGVKQITSS*

spliced messenger RNA

>Gvermi6785.t1 ID=Gvermi6785.t1|Name=Gvermi6785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at ScGOVlb_88:2276049..2277308+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTGGACAAGCCAATGAACGCTAGCAATAGCGTCAATTGGAGCAA
ATACCAGATCGAAAGCTTCGACACAATGCACACCAGACTCGGCATCGACA
AACTTTGGCAGCCGGACACCGACATCACCCACGCCGCGAAGCGAAACGAG
TCCAAGAAGCGCCCCCACCTGCCAGCCACCACGGACGAAAACTTGCACGT
CGCCGGCGACAAGCTCCTCTCCACCCAATCCGTGCTTCCGTGGGATACCA
CAACCGGCGCCCGGGGGCTCAGCTACCTCAGCCGCCAGTTGTCCTTTCTC
CGCAAGCGCCAGCAGATGTTGAAGGCCAGCTACGAAGAGTGCCGCCGCAT
AACGGAGGTATTTTCGAAAACCTTCTACCTGGGGACCACCTTCCTATCCC
CCGAGAAACGCGCCGCCGTGTGGGCCATATACGCGTGGTGCCGGAGAACG
GACGATCTCGTCGACGGTCCGCGTGTGCAGCAGCGCCACGACAGCCTCCG
AGCAATTTTGGGCGAGTGGGAGCAACGTCTCATTGCAATTTTCAACGGCC
GTGCTAGGGATAGCCTGGACCTTGCCTTGGTCGACACCATTGAGAACTAC
CCAGAGGTCACAATATCTCCGTTCCGCGACATGATCCGCGGGATGATTAT
GGACGTGGATCAATCTCGCTTTGAAACGTTTGACGATCTCTACGTGTACT
GCTATCGCGTGGCGGGCACTGTCGGGCTGATGACGTTGCCAGTGATGGGC
ACTCTGAAGTCCGGGCGCGAGGGCCTCCGCGAGGCGATGGGGCCTGCATT
AGCGCTCGGCATCGGCTTACAACTGACCAACATTTTACGCGACGTGGGCG
AAGATCGCTTACGCGGCCGCATATACCTTCCTCTGGAAGACCTGAGACGC
TTCAAATACACAGAGGAAGACCTATTCAACTGCGTTCTTGATTCAAGATA
CCGAGAACTCATGAAGTTTGAGATCGCTCGCGCACGAAGCTACTTCAAGG
AAGCTCGCAAGGGAGTGCATCTGCTGGCAGAAGATTCACGACTTCCAGTA
CAGACGTCCCTCGACATGTATTCACAAATTCTGGACGTTCTGGAAGAAAA
CGGATATGATAACTTCAACCGGCGCGCCTACGTATCGAAGACACAGAAGT
TGTTAACCTTGCCGGTGAGCTATCTTCGATGTAGAACATCTCCGTTGTGG
AAACCTTTACGAATTTCCTCTGAATTTTTACTGGGAGTCAAGCAAATCAC
ATCGTCATAG

protein sequence of Gvermi6785.t1

>Gvermi6785.t1 ID=Gvermi6785.t1|Name=Gvermi6785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=420bp
MVLDKPMNASNSVNWSKYQIESFDTMHTRLGIDKLWQPDTDITHAAKRNE
SKKRPHLPATTDENLHVAGDKLLSTQSVLPWDTTTGARGLSYLSRQLSFL
RKRQQMLKASYEECRRITEVFSKTFYLGTTFLSPEKRAAVWAIYAWCRRT
DDLVDGPRVQQRHDSLRAILGEWEQRLIAIFNGRARDSLDLALVDTIENY
PEVTISPFRDMIRGMIMDVDQSRFETFDDLYVYCYRVAGTVGLMTLPVMG
TLKSGREGLREAMGPALALGIGLQLTNILRDVGEDRLRGRIYLPLEDLRR
FKYTEEDLFNCVLDSRYRELMKFEIARARSYFKEARKGVHLLAEDSRLPV
QTSLDMYSQILDVLEENGYDNFNRRAYVSKTQKLLTLPVSYLRCRTSPLW
KPLRISSEFLLGVKQITSS*

mRNA from alignment at ScGOVlb_88:2276049..2277308+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6785.t1 ID=Gvermi6785.t1|Name=Gvermi6785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at ScGOVlb_88:2276049..2277308+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCTTGGACAAGCCAATGAACGCTAGCAATAGCGTCAATTGGAGCAA
ATACCAGATCGAAAGCTTCGACACAATGCACACCAGACTCGGCATCGACA
AACTTTGGCAGCCGGACACCGACATCACCCACGCCGCGAAGCGAAACGAG
TCCAAGAAGCGCCCCCACCTGCCAGCCACCACGGACGAAAACTTGCACGT
CGCCGGCGACAAGCTCCTCTCCACCCAATCCGTGCTTCCGTGGGATACCA
CAACCGGCGCCCGGGGGCTCAGCTACCTCAGCCGCCAGTTGTCCTTTCTC
CGCAAGCGCCAGCAGATGTTGAAGGCCAGCTACGAAGAGTGCCGCCGCAT
AACGGAGGTATTTTCGAAAACCTTCTACCTGGGGACCACCTTCCTATCCC
CCGAGAAACGCGCCGCCGTGTGGGCCATATACGCGTGGTGCCGGAGAACG
GACGATCTCGTCGACGGTCCGCGTGTGCAGCAGCGCCACGACAGCCTCCG
AGCAATTTTGGGCGAGTGGGAGCAACGTCTCATTGCAATTTTCAACGGCC
GTGCTAGGGATAGCCTGGACCTTGCCTTGGTCGACACCATTGAGAACTAC
CCAGAGGTCACAATATCTCCGTTCCGCGACATGATCCGCGGGATGATTAT
GGACGTGGATCAATCTCGCTTTGAAACGTTTGACGATCTCTACGTGTACT
GCTATCGCGTGGCGGGCACTGTCGGGCTGATGACGTTGCCAGTGATGGGC
ACTCTGAAGTCCGGGCGCGAGGGCCTCCGCGAGGCGATGGGGCCTGCATT
AGCGCTCGGCATCGGCTTACAACTGACCAACATTTTACGCGACGTGGGCG
AAGATCGCTTACGCGGCCGCATATACCTTCCTCTGGAAGACCTGAGACGC
TTCAAATACACAGAGGAAGACCTATTCAACTGCGTTCTTGATTCAAGATA
CCGAGAACTCATGAAGTTTGAGATCGCTCGCGCACGAAGCTACTTCAAGG
AAGCTCGCAAGGGAGTGCATCTGCTGGCAGAAGATTCACGACTTCCAGTA
CAGACGTCCCTCGACATGTATTCACAAATTCTGGACGTTCTGGAAGAAAA
CGGATATGATAACTTCAACCGGCGCGCCTACGTATCGAAGACACAGAAGT
TGTTAACCTTGCCGGTGAGCTATCTTCGATGTAGAACATCTCCGTTGTGG
AAACCTTTACGAATTTCCTCTGAATTTTTACTGGGAGTCAAGCAAATCAC
ATCGTCATAG

Coding sequence (CDS) from alignment at ScGOVlb_88:2276049..2277308+

>Gvermi6785.t1 ID=Gvermi6785.t1|Name=Gvermi6785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1260bp|location=Sequence derived from alignment at ScGOVlb_88:2276049..2277308+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCTTGGACAAGCCAATGAACGCTAGCAATAGCGTCAATTGGAGCAA
ATACCAGATCGAAAGCTTCGACACAATGCACACCAGACTCGGCATCGACA
AACTTTGGCAGCCGGACACCGACATCACCCACGCCGCGAAGCGAAACGAG
TCCAAGAAGCGCCCCCACCTGCCAGCCACCACGGACGAAAACTTGCACGT
CGCCGGCGACAAGCTCCTCTCCACCCAATCCGTGCTTCCGTGGGATACCA
CAACCGGCGCCCGGGGGCTCAGCTACCTCAGCCGCCAGTTGTCCTTTCTC
CGCAAGCGCCAGCAGATGTTGAAGGCCAGCTACGAAGAGTGCCGCCGCAT
AACGGAGGTATTTTCGAAAACCTTCTACCTGGGGACCACCTTCCTATCCC
CCGAGAAACGCGCCGCCGTGTGGGCCATATACGCGTGGTGCCGGAGAACG
GACGATCTCGTCGACGGTCCGCGTGTGCAGCAGCGCCACGACAGCCTCCG
AGCAATTTTGGGCGAGTGGGAGCAACGTCTCATTGCAATTTTCAACGGCC
GTGCTAGGGATAGCCTGGACCTTGCCTTGGTCGACACCATTGAGAACTAC
CCAGAGGTCACAATATCTCCGTTCCGCGACATGATCCGCGGGATGATTAT
GGACGTGGATCAATCTCGCTTTGAAACGTTTGACGATCTCTACGTGTACT
GCTATCGCGTGGCGGGCACTGTCGGGCTGATGACGTTGCCAGTGATGGGC
ACTCTGAAGTCCGGGCGCGAGGGCCTCCGCGAGGCGATGGGGCCTGCATT
AGCGCTCGGCATCGGCTTACAACTGACCAACATTTTACGCGACGTGGGCG
AAGATCGCTTACGCGGCCGCATATACCTTCCTCTGGAAGACCTGAGACGC
TTCAAATACACAGAGGAAGACCTATTCAACTGCGTTCTTGATTCAAGATA
CCGAGAACTCATGAAGTTTGAGATCGCTCGCGCACGAAGCTACTTCAAGG
AAGCTCGCAAGGGAGTGCATCTGCTGGCAGAAGATTCACGACTTCCAGTA
CAGACGTCCCTCGACATGTATTCACAAATTCTGGACGTTCTGGAAGAAAA
CGGATATGATAACTTCAACCGGCGCGCCTACGTATCGAAGACACAGAAGT
TGTTAACCTTGCCGGTGAGCTATCTTCGATGTAGAACATCTCCGTTGTGG
AAACCTTTACGAATTTCCTCTGAATTTTTACTGGGAGTCAAGCAAATCAC
ATCGTCATAG