Gvermi6781.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6781.t1
Unique NameGvermi6781.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2271139..2271995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_03154T0
PFAMs2OG-FeII_Oxy,DIOX_N
Max annot lvl4751|Fungi
Evalue9.82e-32
EggNOG OGsCOG3491@1|root,KOG0143@2759|Eukaryota,3A0I9@33154|Opisthokonta,3Q34N@4751|Fungi
Descriptionnon-haem dioxygenase in morphine synthesis N-terminal
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6781Gvermi6781Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2271139..2271995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6781.t1Gvermi6781.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2271139..2271995 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6781.t1.start1Gvermi6781.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2271139..2271141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6781.t1.CDS1Gvermi6781.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2271139..2271855 +
Gvermi6781.t1.CDS2Gvermi6781.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2271966..2271995 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6781.t1.exon1Gvermi6781.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2271139..2271855 +
Gvermi6781.t1.exon2Gvermi6781.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2271966..2271995 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6781.t1.intron1Gvermi6781.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2271856..2271965 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6781.t1.stop1Gvermi6781.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2271993..2271995 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6781.t1 ID=Gvermi6781.t1|Name=Gvermi6781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=249bp
MKQKAQLPIIDVCSLFSSANESISQHNAIGEELKRAFERTGLAYLRFNGT
SQSLLHNATIPALQSLDSFFQQPASAKSLLIKADLPPGVSRGYLAPASES
GSDALEWKEGYSWSCEWQNGKKPSNSFEAYNVWPQGNSDMQANLAKAFAF
MHKVAKLLSRVLAEALHDSSMPDLESLCDAGESLSLMRAFHYFEKNTNSN
SIGSSPHTDWGFMTLVAQGDGAENALQAYLDGVWKDIPPLSVLSVSGV*
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spliced messenger RNA

>Gvermi6781.t1 ID=Gvermi6781.t1|Name=Gvermi6781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=747bp|location=Sequence derived from alignment at ScGOVlb_88:2271139..2271995+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACAAAAGGCCCAACTCCCTATCATTGACGTCTGCTCGCTGTTTTC
TAGTGCCAACGAAAGCATTTCGCAGCACAACGCAATCGGTGAAGAGCTCA
AGCGTGCTTTTGAACGAACCGGCTTGGCGTACTTGCGATTCAATGGAACA
AGTCAAAGTCTTCTCCACAACGCCACCATCCCCGCTCTACAGTCACTAGA
CTCTTTCTTTCAACAGCCTGCCTCGGCCAAGAGTCTTCTAATCAAAGCAG
ACTTGCCACCGGGAGTGAGCCGCGGCTATTTAGCGCCTGCGTCCGAGTCC
GGCTCTGACGCGCTGGAATGGAAGGAGGGTTATAGCTGGTCTTGTGAGTG
GCAAAATGGCAAGAAACCATCCAATTCCTTCGAAGCATACAATGTTTGGC
CACAAGGCAACTCTGACATGCAAGCCAACCTCGCCAAAGCGTTTGCTTTC
ATGCACAAAGTTGCCAAGCTATTGAGTCGAGTGCTCGCTGAGGCTCTTCA
CGACTCATCTATGCCAGATTTGGAGTCTTTGTGTGATGCTGGGGAGTCTT
TGTCTCTGATGCGAGCTTTTCACTACTTTGAAAAGAACACCAATTCGAAT
AGCATAGGATCTAGCCCTCATACAGATTGGGGATTTATGACCCTTGTCGC
CCAAGGAGACGGAGCAGAGAATGCACTTCAGGCCTACCTTGACGGCGTGT
GGAAAGACATACCGCCCCTTAGTGTACTTTCAGTATCCGGCGTATGA
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protein sequence of Gvermi6781.t1

>Gvermi6781.t1 ID=Gvermi6781.t1|Name=Gvermi6781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=249bp
MKQKAQLPIIDVCSLFSSANESISQHNAIGEELKRAFERTGLAYLRFNGT
SQSLLHNATIPALQSLDSFFQQPASAKSLLIKADLPPGVSRGYLAPASES
GSDALEWKEGYSWSCEWQNGKKPSNSFEAYNVWPQGNSDMQANLAKAFAF
MHKVAKLLSRVLAEALHDSSMPDLESLCDAGESLSLMRAFHYFEKNTNSN
SIGSSPHTDWGFMTLVAQGDGAENALQAYLDGVWKDIPPLSVLSVSGV*
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mRNA from alignment at ScGOVlb_88:2271139..2271995+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6781.t1 ID=Gvermi6781.t1|Name=Gvermi6781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=857bp|location=Sequence derived from alignment at ScGOVlb_88:2271139..2271995+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAACAAAAGGCCCAACTCCCTATCATTGACGTCTGCTCGCTGTTTTC
TAGTGCCAACGAAAGCATTTCGCAGCACAACGCAATCGGTGAAGAGCTCA
AGCGTGCTTTTGAACGAACCGGCTTGGCGTACTTGCGATTCAATGGAACA
AGTCAAAGTCTTCTCCACAACGCCACCATCCCCGCTCTACAGTCACTAGA
CTCTTTCTTTCAACAGCCTGCCTCGGCCAAGAGTCTTCTAATCAAAGCAG
ACTTGCCACCGGGAGTGAGCCGCGGCTATTTAGCGCCTGCGTCCGAGTCC
GGCTCTGACGCGCTGGAATGGAAGGAGGGTTATAGCTGGTCTTGTGAGTG
GCAAAATGGCAAGAAACCATCCAATTCCTTCGAAGCATACAATGTTTGGC
CACAAGGCAACTCTGACATGCAAGCCAACCTCGCCAAAGCGTTTGCTTTC
ATGCACAAAGTTGCCAAGCTATTGAGTCGAGTGCTCGCTGAGGCTCTTCA
CGACTCATCTATGCCAGATTTGGAGTCTTTGTGTGATGCTGGGGAGTCTT
TGTCTCTGATGCGAGCTTTTCACTACTTTGAAAAGAACACCAATTCGAAT
AGCATAGGATCTAGCCCTCATACAGATTGGGGATTTATGACCCTTGTCGC
CCAAGGAGACGGAGCAGAGAATGCACTTCAGGCCTACCTTGACGGCGTGT
GGAAAGACATACCGCCCGTGCCAAACACGCTTGTTGTCAACTGCTCTGAT
TTCTTATCAATGCTTACAAGAGGGCGCCTACAAAGTCCATTGCACAGAGT
CATCTTGACCAACACCGAACGAACCAGCTTAGTGTACTTTCAGTATCCGG
CGTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2271139..2271995+

>Gvermi6781.t1 ID=Gvermi6781.t1|Name=Gvermi6781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=747bp|location=Sequence derived from alignment at ScGOVlb_88:2271139..2271995+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAACAAAAGGCCCAACTCCCTATCATTGACGTCTGCTCGCTGTTTTC
TAGTGCCAACGAAAGCATTTCGCAGCACAACGCAATCGGTGAAGAGCTCA
AGCGTGCTTTTGAACGAACCGGCTTGGCGTACTTGCGATTCAATGGAACA
AGTCAAAGTCTTCTCCACAACGCCACCATCCCCGCTCTACAGTCACTAGA
CTCTTTCTTTCAACAGCCTGCCTCGGCCAAGAGTCTTCTAATCAAAGCAG
ACTTGCCACCGGGAGTGAGCCGCGGCTATTTAGCGCCTGCGTCCGAGTCC
GGCTCTGACGCGCTGGAATGGAAGGAGGGTTATAGCTGGTCTTGTGAGTG
GCAAAATGGCAAGAAACCATCCAATTCCTTCGAAGCATACAATGTTTGGC
CACAAGGCAACTCTGACATGCAAGCCAACCTCGCCAAAGCGTTTGCTTTC
ATGCACAAAGTTGCCAAGCTATTGAGTCGAGTGCTCGCTGAGGCTCTTCA
CGACTCATCTATGCCAGATTTGGAGTCTTTGTGTGATGCTGGGGAGTCTT
TGTCTCTGATGCGAGCTTTTCACTACTTTGAAAAGAACACCAATTCGAAT
AGCATAGGATCTAGCCCTCATACAGATTGGGGATTTATGACCCTTGTCGC
CCAAGGAGACGGAGCAGAGAATGCACTTCAGGCCTACCTTGACGGCGTGT
GGAAAGACATACCGCCCCTTAGTGTACTTTCAGTATCCGGCGTATGA
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