Gvermi6780.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6780.t1
Unique NameGvermi6780.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2269718..2270582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6780Gvermi6780Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2269718..2270582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6780.t1Gvermi6780.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2269718..2270582 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6780.t1.stop1Gvermi6780.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2269718..2269720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6780.t1.CDS1Gvermi6780.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2269718..2270387 -
Gvermi6780.t1.CDS2Gvermi6780.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2270461..2270582 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6780.t1.exon1Gvermi6780.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2269718..2270387 -
Gvermi6780.t1.exon2Gvermi6780.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2270461..2270582 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6780.t1.intron1Gvermi6780.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2270388..2270460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6780.t1.start1Gvermi6780.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2270580..2270582 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6780.t1 ID=Gvermi6780.t1|Name=Gvermi6780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=264bp
MAEFEHDGSALAAVKAFLARQEDSCSENEELPDKYIPRPARLGVGANPNQ
AVHATTSPGLSEANRRLGSALRRQALAAENEDKYVQSSDDEEVESRARAI
GAKYGKRQKAERKRPSSADGQKQKGERATSLTTALKDDSDSDGEWGDDVL
RRMDGDHDADFKRWSEGFVHVQGTGSHANGDGGKVGGEEKSDADAWVKRK
KKKRSRQKNLRRDKRKAHQLPKHLTEETLRAGRVRKSASGKPQFHASDTR
VQSVYPPGCNVAK*
back to top

spliced messenger RNA

>Gvermi6780.t1 ID=Gvermi6780.t1|Name=Gvermi6780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=792bp|location=Sequence derived from alignment at ScGOVlb_88:2269718..2270582- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAATTCGAACACGACGGGAGCGCACTTGCTGCCGTCAAAGCGTT
TCTAGCAAGGCAGGAAGACAGCTGCTCCGAAAATGAGGAGCTGCCCGATA
AGTACATTCCACGACCCGCACGACTTGGAGTCGGGGCAAATCCTAATCAG
GCCGTGCATGCGACGACGTCCCCTGGGCTGAGTGAGGCGAACAGAAGACT
GGGAAGCGCGCTGAGAAGGCAGGCTTTGGCTGCCGAAAACGAGGACAAGT
ACGTGCAAAGTAGTGACGATGAGGAAGTGGAGTCTAGGGCACGAGCCATT
GGCGCAAAATATGGCAAGCGTCAGAAGGCGGAGCGAAAGCGCCCGTCTTC
CGCTGATGGACAGAAGCAAAAAGGCGAACGCGCGACTAGTTTGACGACAG
CACTAAAGGATGATTCTGACAGCGATGGTGAGTGGGGAGATGACGTGCTG
CGGCGCATGGATGGGGACCACGATGCGGACTTCAAGCGATGGAGCGAGGG
TTTCGTTCACGTGCAGGGCACAGGATCACACGCAAACGGAGACGGGGGCA
AAGTGGGCGGTGAGGAGAAAAGCGACGCAGACGCATGGGTGAAGCGGAAA
AAAAAGAAACGAAGCCGGCAAAAAAATTTGCGGCGCGACAAACGAAAAGC
ACATCAACTACCGAAGCACCTGACTGAGGAGACGCTACGGGCCGGGCGAG
TGCGCAAGTCGGCAAGCGGAAAACCGCAGTTTCACGCGTCTGATACGAGA
GTGCAAAGTGTGTATCCGCCCGGATGTAATGTTGCCAAATGA
back to top

protein sequence of Gvermi6780.t1

>Gvermi6780.t1 ID=Gvermi6780.t1|Name=Gvermi6780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=264bp
MAEFEHDGSALAAVKAFLARQEDSCSENEELPDKYIPRPARLGVGANPNQ
AVHATTSPGLSEANRRLGSALRRQALAAENEDKYVQSSDDEEVESRARAI
GAKYGKRQKAERKRPSSADGQKQKGERATSLTTALKDDSDSDGEWGDDVL
RRMDGDHDADFKRWSEGFVHVQGTGSHANGDGGKVGGEEKSDADAWVKRK
KKKRSRQKNLRRDKRKAHQLPKHLTEETLRAGRVRKSASGKPQFHASDTR
VQSVYPPGCNVAK*
back to top

mRNA from alignment at ScGOVlb_88:2269718..2270582-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6780.t1 ID=Gvermi6780.t1|Name=Gvermi6780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=865bp|location=Sequence derived from alignment at ScGOVlb_88:2269718..2270582- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGAATTCGAACACGACGGGAGCGCACTTGCTGCCGTCAAAGCGTT
TCTAGCAAGGCAGGAAGACAGCTGCTCCGAAAATGAGGAGCTGCCCGATA
AGTACATTCCACGACCCGCACGGTACGGATTATTCAATCATCAAATCACT
GTGACTTGCAAATGCATGGACGCTAACTGGACTTGTGTGGCGCAGACTTG
GAGTCGGGGCAAATCCTAATCAGGCCGTGCATGCGACGACGTCCCCTGGG
CTGAGTGAGGCGAACAGAAGACTGGGAAGCGCGCTGAGAAGGCAGGCTTT
GGCTGCCGAAAACGAGGACAAGTACGTGCAAAGTAGTGACGATGAGGAAG
TGGAGTCTAGGGCACGAGCCATTGGCGCAAAATATGGCAAGCGTCAGAAG
GCGGAGCGAAAGCGCCCGTCTTCCGCTGATGGACAGAAGCAAAAAGGCGA
ACGCGCGACTAGTTTGACGACAGCACTAAAGGATGATTCTGACAGCGATG
GTGAGTGGGGAGATGACGTGCTGCGGCGCATGGATGGGGACCACGATGCG
GACTTCAAGCGATGGAGCGAGGGTTTCGTTCACGTGCAGGGCACAGGATC
ACACGCAAACGGAGACGGGGGCAAAGTGGGCGGTGAGGAGAAAAGCGACG
CAGACGCATGGGTGAAGCGGAAAAAAAAGAAACGAAGCCGGCAAAAAAAT
TTGCGGCGCGACAAACGAAAAGCACATCAACTACCGAAGCACCTGACTGA
GGAGACGCTACGGGCCGGGCGAGTGCGCAAGTCGGCAAGCGGAAAACCGC
AGTTTCACGCGTCTGATACGAGAGTGCAAAGTGTGTATCCGCCCGGATGT
AATGTTGCCAAATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2269718..2270582-

>Gvermi6780.t1 ID=Gvermi6780.t1|Name=Gvermi6780.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=792bp|location=Sequence derived from alignment at ScGOVlb_88:2269718..2270582- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGAATTCGAACACGACGGGAGCGCACTTGCTGCCGTCAAAGCGTT
TCTAGCAAGGCAGGAAGACAGCTGCTCCGAAAATGAGGAGCTGCCCGATA
AGTACATTCCACGACCCGCACGACTTGGAGTCGGGGCAAATCCTAATCAG
GCCGTGCATGCGACGACGTCCCCTGGGCTGAGTGAGGCGAACAGAAGACT
GGGAAGCGCGCTGAGAAGGCAGGCTTTGGCTGCCGAAAACGAGGACAAGT
ACGTGCAAAGTAGTGACGATGAGGAAGTGGAGTCTAGGGCACGAGCCATT
GGCGCAAAATATGGCAAGCGTCAGAAGGCGGAGCGAAAGCGCCCGTCTTC
CGCTGATGGACAGAAGCAAAAAGGCGAACGCGCGACTAGTTTGACGACAG
CACTAAAGGATGATTCTGACAGCGATGGTGAGTGGGGAGATGACGTGCTG
CGGCGCATGGATGGGGACCACGATGCGGACTTCAAGCGATGGAGCGAGGG
TTTCGTTCACGTGCAGGGCACAGGATCACACGCAAACGGAGACGGGGGCA
AAGTGGGCGGTGAGGAGAAAAGCGACGCAGACGCATGGGTGAAGCGGAAA
AAAAAGAAACGAAGCCGGCAAAAAAATTTGCGGCGCGACAAACGAAAAGC
ACATCAACTACCGAAGCACCTGACTGAGGAGACGCTACGGGCCGGGCGAG
TGCGCAAGTCGGCAAGCGGAAAACCGCAGTTTCACGCGTCTGATACGAGA
GTGCAAAGTGTGTATCCGCCCGGATGTAATGTTGCCAAATGA
back to top