Gvermi6779.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6779.t1
Unique NameGvermi6779.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2268278..2268713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP09049
PFAMsComplex1_LYR
Max annot lvl3041|Chlorophyta
KEGG koko:K22069
Evalue0.000245
EggNOG OGs2DISQ@1|root,2SD8U@2759|Eukaryota,37XP1@33090|Viridiplantae,34ITC@3041|Chlorophyta
DescriptionBelongs to the complex I LYR family
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6779Gvermi6779Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2268278..2268713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6779.t1Gvermi6779.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2268278..2268713 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6779.t1.start1Gvermi6779.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2268278..2268280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6779.t1.CDS1Gvermi6779.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2268278..2268392 +
Gvermi6779.t1.CDS2Gvermi6779.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2268571..2268713 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6779.t1.exon1Gvermi6779.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2268278..2268392 +
Gvermi6779.t1.exon2Gvermi6779.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2268571..2268713 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6779.t1.intron1Gvermi6779.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2268393..2268570 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6779.t1.stop1Gvermi6779.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2268711..2268713 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6779.t1 ID=Gvermi6779.t1|Name=Gvermi6779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=86bp
MTAPPSSRSVLSLYRALLRAVRHYPSMKRDSLAKAIKEDFREKRNMSGDQ
LEKALWLGHMELERLQKWVPTSKQMADGKDMDIKL*
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spliced messenger RNA

>Gvermi6779.t1 ID=Gvermi6779.t1|Name=Gvermi6779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=258bp|location=Sequence derived from alignment at ScGOVlb_88:2268278..2268713+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCCCTCCCTCGTCGAGAAGCGTTCTCTCCCTGTATCGCGCGTT
GCTCCGCGCCGTGCGGCATTACCCCAGTATGAAGAGAGACTCGCTCGCCA
AAGCCATTAAAGAAGACTTCAGGGAGAAGCGAAATATGTCAGGTGACCAG
CTCGAGAAAGCTTTGTGGCTCGGCCACATGGAGCTGGAGCGCTTGCAGAA
ATGGGTTCCGACCAGCAAGCAAATGGCGGACGGTAAGGATATGGACATAA
AGTTGTAG
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protein sequence of Gvermi6779.t1

>Gvermi6779.t1 ID=Gvermi6779.t1|Name=Gvermi6779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=86bp
MTAPPSSRSVLSLYRALLRAVRHYPSMKRDSLAKAIKEDFREKRNMSGDQ
LEKALWLGHMELERLQKWVPTSKQMADGKDMDIKL*
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mRNA from alignment at ScGOVlb_88:2268278..2268713+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6779.t1 ID=Gvermi6779.t1|Name=Gvermi6779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=436bp|location=Sequence derived from alignment at ScGOVlb_88:2268278..2268713+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCCCTCCCTCGTCGAGAAGCGTTCTCTCCCTGTATCGCGCGTT
GCTCCGCGCCGTGCGGCATTACCCCAGTATGAAGAGAGACTCGCTCGCCA
AAGCCATTAAAGAAGGTGCGTCCTATAATCCCCCCCGCTCTCACTCTCGT
CGCACGCAGCCTACCCAAAGTGCCCGCCATGTGATCGGAGCCGCAATTGT
GCATCTCACGTGATAGCGTACTTGCAGCCCATGAGACACTAACTCGGTTA
ACCATCCCGTACACCACTTGCGCTTTCTTGCAACCATTCGCAGACTTCAG
GGAGAAGCGAAATATGTCAGGTGACCAGCTCGAGAAAGCTTTGTGGCTCG
GCCACATGGAGCTGGAGCGCTTGCAGAAATGGGTTCCGACCAGCAAGCAA
ATGGCGGACGGTAAGGATATGGACATAAAGTTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2268278..2268713+

>Gvermi6779.t1 ID=Gvermi6779.t1|Name=Gvermi6779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=258bp|location=Sequence derived from alignment at ScGOVlb_88:2268278..2268713+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCCCTCCCTCGTCGAGAAGCGTTCTCTCCCTGTATCGCGCGTT
GCTCCGCGCCGTGCGGCATTACCCCAGTATGAAGAGAGACTCGCTCGCCA
AAGCCATTAAAGAAGACTTCAGGGAGAAGCGAAATATGTCAGGTGACCAG
CTCGAGAAAGCTTTGTGGCTCGGCCACATGGAGCTGGAGCGCTTGCAGAA
ATGGGTTCCGACCAGCAAGCAAATGGCGGACGGTAAGGATATGGACATAA
AGTTGTAG
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