Gvermi6775.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6775.t1
Unique NameGvermi6775.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2255843..2256907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog189753.AXAS01000054_gene7726
PFAMsGAF_2,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg
Max annot lvl28211|Alphaproteobacteria
Evalue0.000339
EggNOG OGsCOG2202@1|root,COG2203@1|root,COG4191@1|root,COG2202@2|Bacteria,COG2203@2|Bacteria,COG4191@2|Bacteria,1RCM9@1224|Proteobacteria,2TR8X@28211|Alphaproteobacteria,3JV46@41294|Bradyrhizobiaceae
DescriptionHis Kinase A (phosphoacceptor) domain
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6775Gvermi6775Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2255843..2256907 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6775.t1.stop1Gvermi6775.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2255843..2255845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6775.t1.CDS1Gvermi6775.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2255843..2256907 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6775.t1.exon1Gvermi6775.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2255843..2256907 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6775.t1.start1Gvermi6775.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2256905..2256907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6775.t1Gvermi6775.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2255843..2256907 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6775.t1 ID=Gvermi6775.t1|Name=Gvermi6775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=355bp
MYLNNIFEQVPGPDLDTIPDPNVSASLLAVTDPSWTPAPQEDHDDDHDDE
DEDEDAEHKQHTPAGKRRKQELHRRHSKRYRDNLGELFTSLERLLPNVVP
GCKLKTKSQIIANSVHAIKHLRSEVSTLEIQYVLSSPTNRTKWVEDIVGN
AVCFQDVVDPFITLTLTMQGWKHSELWTRHEMNVSSDGAEAATPVSNATE
SVQHLHPSTPKKFFLKLLDATSSHDIGAALRASYKQLSDRARGHFTRVAD
CNLVGRVASSLAPEIIDIRDPNSSTIFLRARAAEECGLLICFAVPILVRG
HVFAVVMFFDDHPRANISQDLNVIQDLASSLGNCYGASSVHANREQADNK
SSSK*
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spliced messenger RNA

>Gvermi6775.t1 ID=Gvermi6775.t1|Name=Gvermi6775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at ScGOVlb_88:2255843..2256907- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCTCAACAACATCTTCGAGCAGGTGCCCGGCCCAGACCTGGACAC
CATCCCAGACCCTAACGTCTCTGCATCCTTGCTAGCCGTCACGGATCCCA
GCTGGACCCCGGCTCCCCAGGAGGACCACGACGACGACCACGACGATGAA
GACGAAGATGAAGACGCCGAACACAAGCAACACACTCCTGCGGGCAAGAG
GCGCAAGCAAGAGCTGCACAGACGCCACTCCAAGCGCTACCGCGACAACT
TGGGAGAGCTCTTTACCTCATTGGAACGCCTTCTGCCAAACGTCGTTCCG
GGCTGCAAACTAAAGACAAAGAGTCAGATTATTGCAAATAGCGTGCATGC
CATCAAACACTTGCGCTCAGAGGTTTCCACTCTTGAAATCCAGTACGTCT
TGTCCAGCCCCACAAATCGCACCAAGTGGGTTGAGGACATCGTCGGCAAC
GCCGTGTGCTTCCAGGACGTCGTTGACCCTTTCATCACCTTGACGCTCAC
CATGCAGGGTTGGAAGCATTCCGAACTGTGGACACGGCATGAGATGAACG
TTAGCAGCGACGGAGCCGAAGCCGCAACCCCCGTGTCAAACGCCACGGAA
TCCGTCCAGCATCTTCATCCGTCAACTCCGAAGAAATTCTTTCTCAAGCT
TCTCGACGCAACCTCCTCGCATGACATCGGCGCCGCGCTGCGTGCATCGT
ATAAACAGCTCTCGGACCGCGCCCGCGGTCACTTCACCAGAGTCGCGGAC
TGTAATCTTGTTGGACGTGTCGCGTCTTCCCTGGCGCCGGAAATCATCGA
CATTCGCGACCCAAACTCCAGCACAATATTCCTGCGCGCGCGCGCCGCAG
AGGAATGCGGCCTCCTCATATGCTTCGCGGTTCCCATCCTCGTCAGGGGC
CATGTGTTTGCTGTGGTTATGTTTTTCGATGATCACCCGCGAGCAAACAT
CAGCCAGGATCTGAACGTTATTCAGGATCTGGCCAGTAGTCTTGGAAATT
GCTATGGCGCGTCAAGCGTTCATGCTAACCGCGAGCAGGCCGATAACAAA
AGTTCATCAAAATGA
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protein sequence of Gvermi6775.t1

>Gvermi6775.t1 ID=Gvermi6775.t1|Name=Gvermi6775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=355bp
MYLNNIFEQVPGPDLDTIPDPNVSASLLAVTDPSWTPAPQEDHDDDHDDE
DEDEDAEHKQHTPAGKRRKQELHRRHSKRYRDNLGELFTSLERLLPNVVP
GCKLKTKSQIIANSVHAIKHLRSEVSTLEIQYVLSSPTNRTKWVEDIVGN
AVCFQDVVDPFITLTLTMQGWKHSELWTRHEMNVSSDGAEAATPVSNATE
SVQHLHPSTPKKFFLKLLDATSSHDIGAALRASYKQLSDRARGHFTRVAD
CNLVGRVASSLAPEIIDIRDPNSSTIFLRARAAEECGLLICFAVPILVRG
HVFAVVMFFDDHPRANISQDLNVIQDLASSLGNCYGASSVHANREQADNK
SSSK*
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mRNA from alignment at ScGOVlb_88:2255843..2256907-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6775.t1 ID=Gvermi6775.t1|Name=Gvermi6775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at ScGOVlb_88:2255843..2256907- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACCTCAACAACATCTTCGAGCAGGTGCCCGGCCCAGACCTGGACAC
CATCCCAGACCCTAACGTCTCTGCATCCTTGCTAGCCGTCACGGATCCCA
GCTGGACCCCGGCTCCCCAGGAGGACCACGACGACGACCACGACGATGAA
GACGAAGATGAAGACGCCGAACACAAGCAACACACTCCTGCGGGCAAGAG
GCGCAAGCAAGAGCTGCACAGACGCCACTCCAAGCGCTACCGCGACAACT
TGGGAGAGCTCTTTACCTCATTGGAACGCCTTCTGCCAAACGTCGTTCCG
GGCTGCAAACTAAAGACAAAGAGTCAGATTATTGCAAATAGCGTGCATGC
CATCAAACACTTGCGCTCAGAGGTTTCCACTCTTGAAATCCAGTACGTCT
TGTCCAGCCCCACAAATCGCACCAAGTGGGTTGAGGACATCGTCGGCAAC
GCCGTGTGCTTCCAGGACGTCGTTGACCCTTTCATCACCTTGACGCTCAC
CATGCAGGGTTGGAAGCATTCCGAACTGTGGACACGGCATGAGATGAACG
TTAGCAGCGACGGAGCCGAAGCCGCAACCCCCGTGTCAAACGCCACGGAA
TCCGTCCAGCATCTTCATCCGTCAACTCCGAAGAAATTCTTTCTCAAGCT
TCTCGACGCAACCTCCTCGCATGACATCGGCGCCGCGCTGCGTGCATCGT
ATAAACAGCTCTCGGACCGCGCCCGCGGTCACTTCACCAGAGTCGCGGAC
TGTAATCTTGTTGGACGTGTCGCGTCTTCCCTGGCGCCGGAAATCATCGA
CATTCGCGACCCAAACTCCAGCACAATATTCCTGCGCGCGCGCGCCGCAG
AGGAATGCGGCCTCCTCATATGCTTCGCGGTTCCCATCCTCGTCAGGGGC
CATGTGTTTGCTGTGGTTATGTTTTTCGATGATCACCCGCGAGCAAACAT
CAGCCAGGATCTGAACGTTATTCAGGATCTGGCCAGTAGTCTTGGAAATT
GCTATGGCGCGTCAAGCGTTCATGCTAACCGCGAGCAGGCCGATAACAAA
AGTTCATCAAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2255843..2256907-

>Gvermi6775.t1 ID=Gvermi6775.t1|Name=Gvermi6775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1065bp|location=Sequence derived from alignment at ScGOVlb_88:2255843..2256907- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACCTCAACAACATCTTCGAGCAGGTGCCCGGCCCAGACCTGGACAC
CATCCCAGACCCTAACGTCTCTGCATCCTTGCTAGCCGTCACGGATCCCA
GCTGGACCCCGGCTCCCCAGGAGGACCACGACGACGACCACGACGATGAA
GACGAAGATGAAGACGCCGAACACAAGCAACACACTCCTGCGGGCAAGAG
GCGCAAGCAAGAGCTGCACAGACGCCACTCCAAGCGCTACCGCGACAACT
TGGGAGAGCTCTTTACCTCATTGGAACGCCTTCTGCCAAACGTCGTTCCG
GGCTGCAAACTAAAGACAAAGAGTCAGATTATTGCAAATAGCGTGCATGC
CATCAAACACTTGCGCTCAGAGGTTTCCACTCTTGAAATCCAGTACGTCT
TGTCCAGCCCCACAAATCGCACCAAGTGGGTTGAGGACATCGTCGGCAAC
GCCGTGTGCTTCCAGGACGTCGTTGACCCTTTCATCACCTTGACGCTCAC
CATGCAGGGTTGGAAGCATTCCGAACTGTGGACACGGCATGAGATGAACG
TTAGCAGCGACGGAGCCGAAGCCGCAACCCCCGTGTCAAACGCCACGGAA
TCCGTCCAGCATCTTCATCCGTCAACTCCGAAGAAATTCTTTCTCAAGCT
TCTCGACGCAACCTCCTCGCATGACATCGGCGCCGCGCTGCGTGCATCGT
ATAAACAGCTCTCGGACCGCGCCCGCGGTCACTTCACCAGAGTCGCGGAC
TGTAATCTTGTTGGACGTGTCGCGTCTTCCCTGGCGCCGGAAATCATCGA
CATTCGCGACCCAAACTCCAGCACAATATTCCTGCGCGCGCGCGCCGCAG
AGGAATGCGGCCTCCTCATATGCTTCGCGGTTCCCATCCTCGTCAGGGGC
CATGTGTTTGCTGTGGTTATGTTTTTCGATGATCACCCGCGAGCAAACAT
CAGCCAGGATCTGAACGTTATTCAGGATCTGGCCAGTAGTCTTGGAAATT
GCTATGGCGCGTCAAGCGTTCATGCTAACCGCGAGCAGGCCGATAACAAA
AGTTCATCAAAATGA
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