Gvermi6773.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6773.t1
Unique NameGvermi6773.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2235681..2236616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog208960.XP_007265344.1
PFAMsSas10_Utp3
Max annot lvl4751|Fungi
KEGG koko:K12592
KEGG Pathwayko03018,map03018
Evalue6.78e-09
EggNOG OGsKOG4835@1|root,KOG4835@2759|Eukaryota,3A99H@33154|Opisthokonta,3P72K@4751|Fungi,3V2M1@5204|Basidiomycota,22EIV@155619|Agaricomycetes,3H8FX@355688|Agaricomycetes incertae sedis
DescriptionSas10/Utp3/C1D family
COG categoryL
BRITEko00000,ko00001,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6773Gvermi6773Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2235681..2236616 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6773.t1.stop1Gvermi6773.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2235681..2235683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6773.t1.CDS1Gvermi6773.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2235681..2236616 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6773.t1.exon1Gvermi6773.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2235681..2236616 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6773.t1.start1Gvermi6773.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2236614..2236616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6773.t1Gvermi6773.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2235681..2236616 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6773.t1 ID=Gvermi6773.t1|Name=Gvermi6773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=312bp
MERSHEQAQLQYTKFSYALGQLQRTLRPVLSAIDALRSAGNEEDLDPMSR
ARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEA
GESTEHKPKPDRDRRKHIVNAKRSSARLAALVFPEEEDLLRALQGIPGRL
ESKRGEKSASHVENEELESEKHSAANTLTRPEEESSRDEDNEHATFNEVV
DFNSGDDDESGTGAEDNKDETAAELEKSEKQPESTPPASEKPTEKKKIKK
DKKEKERKKKKDKKSKDYKEKDGTEQNKNSTKSKKRKSKSDLSSGDKREK
KRKKRDKEKRG*
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spliced messenger RNA

>Gvermi6773.t1 ID=Gvermi6773.t1|Name=Gvermi6773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_88:2235681..2236616- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGCTCCCATGAGCAGGCCCAACTACAGTACACCAAGTTTTCCTA
CGCCCTAGGACAGCTTCAACGCACTCTAAGGCCGGTCTTGTCGGCGATAG
ATGCTCTACGCTCAGCAGGTAACGAGGAGGATTTGGACCCCATGTCAAGA
GCCCGTATGCATATATCACTGGCCTACGCTGTCAATTCGCTCTTTTGCAT
GTATCTTCGGACACAGGGAATCGACCCTTTGACCCATCCTGTGGCAGAGG
AAATTGCCCGCGTACAAGATGCATTCATGCGAATGAGAAAGGTCGAAGCG
GGGGAATCCACCGAGCATAAACCAAAGCCAGACCGTGATCGACGAAAACA
TATTGTAAATGCTAAGAGAAGTTCGGCAAGGCTTGCAGCTTTGGTGTTTC
CAGAGGAAGAGGATTTGCTCCGTGCACTGCAAGGGATACCAGGAAGATTG
GAAAGTAAACGAGGGGAAAAGAGTGCTTCGCACGTAGAGAACGAAGAACT
GGAAAGCGAAAAGCATAGCGCTGCAAACACTTTGACGCGGCCCGAAGAAG
AGAGTTCTCGGGATGAGGACAATGAACATGCAACATTTAATGAAGTCGTA
GATTTTAACTCTGGTGATGATGACGAAAGCGGGACAGGCGCTGAAGATAA
CAAAGACGAGACTGCAGCAGAACTTGAGAAAAGTGAAAAACAGCCGGAAT
CCACACCGCCAGCCTCGGAAAAACCAACGGAAAAGAAAAAAATAAAGAAA
GATAAGAAGGAAAAAGAACGAAAGAAGAAGAAAGATAAGAAGAGCAAAGA
TTATAAGGAAAAAGACGGGACAGAGCAGAACAAGAACAGTACAAAGAGCA
AGAAAAGAAAGTCAAAGAGTGATCTCTCGTCTGGGGACAAGCGGGAAAAG
AAAAGAAAGAAACGAGACAAGGAGAAGCGCGGATAA
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protein sequence of Gvermi6773.t1

>Gvermi6773.t1 ID=Gvermi6773.t1|Name=Gvermi6773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=312bp
MERSHEQAQLQYTKFSYALGQLQRTLRPVLSAIDALRSAGNEEDLDPMSR
ARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEA
GESTEHKPKPDRDRRKHIVNAKRSSARLAALVFPEEEDLLRALQGIPGRL
ESKRGEKSASHVENEELESEKHSAANTLTRPEEESSRDEDNEHATFNEVV
DFNSGDDDESGTGAEDNKDETAAELEKSEKQPESTPPASEKPTEKKKIKK
DKKEKERKKKKDKKSKDYKEKDGTEQNKNSTKSKKRKSKSDLSSGDKREK
KRKKRDKEKRG*
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mRNA from alignment at ScGOVlb_88:2235681..2236616-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6773.t1 ID=Gvermi6773.t1|Name=Gvermi6773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_88:2235681..2236616- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACGCTCCCATGAGCAGGCCCAACTACAGTACACCAAGTTTTCCTA
CGCCCTAGGACAGCTTCAACGCACTCTAAGGCCGGTCTTGTCGGCGATAG
ATGCTCTACGCTCAGCAGGTAACGAGGAGGATTTGGACCCCATGTCAAGA
GCCCGTATGCATATATCACTGGCCTACGCTGTCAATTCGCTCTTTTGCAT
GTATCTTCGGACACAGGGAATCGACCCTTTGACCCATCCTGTGGCAGAGG
AAATTGCCCGCGTACAAGATGCATTCATGCGAATGAGAAAGGTCGAAGCG
GGGGAATCCACCGAGCATAAACCAAAGCCAGACCGTGATCGACGAAAACA
TATTGTAAATGCTAAGAGAAGTTCGGCAAGGCTTGCAGCTTTGGTGTTTC
CAGAGGAAGAGGATTTGCTCCGTGCACTGCAAGGGATACCAGGAAGATTG
GAAAGTAAACGAGGGGAAAAGAGTGCTTCGCACGTAGAGAACGAAGAACT
GGAAAGCGAAAAGCATAGCGCTGCAAACACTTTGACGCGGCCCGAAGAAG
AGAGTTCTCGGGATGAGGACAATGAACATGCAACATTTAATGAAGTCGTA
GATTTTAACTCTGGTGATGATGACGAAAGCGGGACAGGCGCTGAAGATAA
CAAAGACGAGACTGCAGCAGAACTTGAGAAAAGTGAAAAACAGCCGGAAT
CCACACCGCCAGCCTCGGAAAAACCAACGGAAAAGAAAAAAATAAAGAAA
GATAAGAAGGAAAAAGAACGAAAGAAGAAGAAAGATAAGAAGAGCAAAGA
TTATAAGGAAAAAGACGGGACAGAGCAGAACAAGAACAGTACAAAGAGCA
AGAAAAGAAAGTCAAAGAGTGATCTCTCGTCTGGGGACAAGCGGGAAAAG
AAAAGAAAGAAACGAGACAAGGAGAAGCGCGGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2235681..2236616-

>Gvermi6773.t1 ID=Gvermi6773.t1|Name=Gvermi6773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=936bp|location=Sequence derived from alignment at ScGOVlb_88:2235681..2236616- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACGCTCCCATGAGCAGGCCCAACTACAGTACACCAAGTTTTCCTA
CGCCCTAGGACAGCTTCAACGCACTCTAAGGCCGGTCTTGTCGGCGATAG
ATGCTCTACGCTCAGCAGGTAACGAGGAGGATTTGGACCCCATGTCAAGA
GCCCGTATGCATATATCACTGGCCTACGCTGTCAATTCGCTCTTTTGCAT
GTATCTTCGGACACAGGGAATCGACCCTTTGACCCATCCTGTGGCAGAGG
AAATTGCCCGCGTACAAGATGCATTCATGCGAATGAGAAAGGTCGAAGCG
GGGGAATCCACCGAGCATAAACCAAAGCCAGACCGTGATCGACGAAAACA
TATTGTAAATGCTAAGAGAAGTTCGGCAAGGCTTGCAGCTTTGGTGTTTC
CAGAGGAAGAGGATTTGCTCCGTGCACTGCAAGGGATACCAGGAAGATTG
GAAAGTAAACGAGGGGAAAAGAGTGCTTCGCACGTAGAGAACGAAGAACT
GGAAAGCGAAAAGCATAGCGCTGCAAACACTTTGACGCGGCCCGAAGAAG
AGAGTTCTCGGGATGAGGACAATGAACATGCAACATTTAATGAAGTCGTA
GATTTTAACTCTGGTGATGATGACGAAAGCGGGACAGGCGCTGAAGATAA
CAAAGACGAGACTGCAGCAGAACTTGAGAAAAGTGAAAAACAGCCGGAAT
CCACACCGCCAGCCTCGGAAAAACCAACGGAAAAGAAAAAAATAAAGAAA
GATAAGAAGGAAAAAGAACGAAAGAAGAAGAAAGATAAGAAGAGCAAAGA
TTATAAGGAAAAAGACGGGACAGAGCAGAACAAGAACAGTACAAAGAGCA
AGAAAAGAAAGTCAAAGAGTGATCTCTCGTCTGGGGACAAGCGGGAAAAG
AAAAGAAAGAAACGAGACAAGGAGAAGCGCGGATAA
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