Gvermi6771.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6771.t1
Unique NameGvermi6771.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length537
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2231729..2233339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.010G052500.1
PFAMsNramp
Max annot lvl35493|Streptophyta
KEGG koko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2
KEGG Pathwayko04142,ko04216,ko04978,map04142,map04216,map04978
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0010035,GO:0010038,GO:0010044,GO:0015075,GO:0015083,GO:0015318,GO:0015690,GO:0016020,GO:0022857,GO:0030001,GO:0034220,GO:0042221,GO:0044464,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072512,GO:0098660,GO:1902602
Evalue5.96e-69
EggNOG OGsCOG1914@1|root,KOG1291@2759|Eukaryota,37I3K@33090|Viridiplantae,3GFPG@35493|Streptophyta
DescriptionMetal transporter
COG categoryP
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6771Gvermi6771Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2231729..2233339 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6771.t1.stop1Gvermi6771.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2231729..2231731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6771.t1.CDS1Gvermi6771.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2231729..2233339 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6771.t1.exon1Gvermi6771.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2231729..2233339 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6771.t1.start1Gvermi6771.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2233337..2233339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6771.t1Gvermi6771.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2231729..2233339 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6771.t1 ID=Gvermi6771.t1|Name=Gvermi6771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=537bp
MTSSDLDDGQQPAAGVATCRRHAECAGRACRQPSASLASFVTTFGIPCLI
AVAAIDPGNLELDLQAGHALGYSLIWVILFSSVLGWILQSLVAHLTICSR
KPLAALLAQVYRHDRLLSISLFVVAELSVIAFDVAEVVGTAIALQLLFHF
PLWLGIMLSGLDTLLVLFVQRNGLNRVEALIEFSLFLLAICLFYEFVMTR
PDIFSIIKGSVVPNLGPDPQQGAILGVGVLGSVVMAHNLFLHSWLVHDRN
NETHLSEYSSQVSSGTRFLRRSCRYATIEAGAIFVATYLINTCVVAITAA
LPEKSLRSISQLGLQDAGALLQSILGSRFASTAWAIALLCSGHAATVTGA
LASQAVCEGFWNIQGHQTSMVILASRAIAIFPAMAAALLAGEDSANKLIV
LSQVILSLALPFAVIPMFKLLINVDRISHGRVINKKMLTAGYVAFALMIA
ANTYVFYDMVNEVNNLFGCFVAFGVCLLGLWSLFLIAKLIITPVYLTDVL
MATDWIRENDETKPLLANNEADSSTKFVKDASYQLQ*
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spliced messenger RNA

>Gvermi6771.t1 ID=Gvermi6771.t1|Name=Gvermi6771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at ScGOVlb_88:2231729..2233339- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCGTCAGACCTCGATGACGGCCAGCAGCCCGCTGCGGGCGTGGC
TACGTGCCGCCGCCATGCTGAGTGCGCCGGCCGCGCCTGCCGCCAACCCT
CCGCGTCGCTCGCCTCCTTCGTCACCACTTTCGGCATTCCGTGTCTCATC
GCTGTCGCCGCCATCGACCCCGGCAACCTCGAGCTTGACCTGCAGGCCGG
CCACGCCCTGGGCTACTCGCTCATCTGGGTCATCCTGTTTTCCAGCGTGC
TCGGATGGATTCTGCAGTCTCTGGTCGCCCACCTCACCATTTGCTCGCGC
AAGCCGCTTGCCGCTCTTTTGGCACAGGTCTACCGCCACGACCGGCTCCT
GTCCATCTCCCTGTTTGTCGTGGCTGAACTCTCAGTCATCGCTTTTGACG
TCGCCGAAGTCGTCGGCACCGCCATAGCCCTGCAGCTTTTGTTCCACTTC
CCCCTGTGGCTTGGGATCATGTTGTCCGGTCTGGACACGTTGTTGGTCCT
GTTCGTGCAACGGAATGGTCTCAATCGCGTCGAGGCCCTCATCGAGTTCT
CATTGTTTCTGCTCGCCATCTGTCTGTTCTACGAGTTTGTCATGACTCGC
CCAGACATTTTTTCCATCATCAAGGGTTCTGTCGTGCCCAACTTGGGGCC
GGATCCACAGCAGGGTGCTATACTTGGCGTGGGAGTGCTCGGAAGCGTTG
TGATGGCGCACAACCTTTTTTTGCACAGCTGGCTGGTGCACGATCGAAAC
AACGAAACGCATCTTTCCGAGTACTCTTCTCAAGTATCGAGTGGCACTCG
ATTTTTGCGACGATCTTGCCGTTATGCCACAATCGAAGCAGGTGCCATTT
TCGTAGCCACCTACCTTATCAACACCTGCGTCGTCGCCATCACCGCAGCA
CTGCCGGAGAAAAGTTTGCGCTCCATTTCCCAATTGGGCCTGCAGGATGC
GGGCGCTCTCCTCCAATCCATATTGGGATCGAGGTTTGCCTCCACGGCCT
GGGCAATCGCTTTGTTGTGCAGCGGCCACGCTGCTACCGTTACCGGCGCT
TTGGCGAGCCAGGCCGTCTGCGAGGGATTTTGGAACATTCAGGGTCACCA
GACGTCCATGGTCATTCTCGCCAGCCGCGCAATAGCAATCTTTCCAGCTA
TGGCAGCAGCGCTTTTGGCTGGTGAAGACAGTGCCAACAAGCTTATCGTT
CTTTCGCAGGTCATTTTATCGCTCGCACTCCCTTTCGCTGTTATTCCTAT
GTTCAAGCTCTTAATTAACGTTGATCGCATCTCACATGGCCGCGTCATCA
ACAAAAAAATGTTGACTGCAGGCTACGTAGCGTTTGCGTTGATGATCGCC
GCAAACACGTATGTTTTCTATGACATGGTCAACGAGGTCAATAATCTTTT
CGGTTGTTTTGTGGCGTTTGGTGTCTGCCTTCTTGGTTTGTGGTCTCTTT
TTCTAATTGCAAAGCTTATAATCACTCCCGTTTACTTAACTGATGTACTA
ATGGCAACTGACTGGATACGGGAAAATGACGAAACGAAGCCTCTGCTAGC
TAACAACGAAGCCGATAGCAGTACCAAATTCGTGAAGGACGCATCCTATC
AACTACAATAG
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protein sequence of Gvermi6771.t1

>Gvermi6771.t1 ID=Gvermi6771.t1|Name=Gvermi6771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=537bp
MTSSDLDDGQQPAAGVATCRRHAECAGRACRQPSASLASFVTTFGIPCLI
AVAAIDPGNLELDLQAGHALGYSLIWVILFSSVLGWILQSLVAHLTICSR
KPLAALLAQVYRHDRLLSISLFVVAELSVIAFDVAEVVGTAIALQLLFHF
PLWLGIMLSGLDTLLVLFVQRNGLNRVEALIEFSLFLLAICLFYEFVMTR
PDIFSIIKGSVVPNLGPDPQQGAILGVGVLGSVVMAHNLFLHSWLVHDRN
NETHLSEYSSQVSSGTRFLRRSCRYATIEAGAIFVATYLINTCVVAITAA
LPEKSLRSISQLGLQDAGALLQSILGSRFASTAWAIALLCSGHAATVTGA
LASQAVCEGFWNIQGHQTSMVILASRAIAIFPAMAAALLAGEDSANKLIV
LSQVILSLALPFAVIPMFKLLINVDRISHGRVINKKMLTAGYVAFALMIA
ANTYVFYDMVNEVNNLFGCFVAFGVCLLGLWSLFLIAKLIITPVYLTDVL
MATDWIRENDETKPLLANNEADSSTKFVKDASYQLQ*
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mRNA from alignment at ScGOVlb_88:2231729..2233339-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6771.t1 ID=Gvermi6771.t1|Name=Gvermi6771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at ScGOVlb_88:2231729..2233339- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTCGTCAGACCTCGATGACGGCCAGCAGCCCGCTGCGGGCGTGGC
TACGTGCCGCCGCCATGCTGAGTGCGCCGGCCGCGCCTGCCGCCAACCCT
CCGCGTCGCTCGCCTCCTTCGTCACCACTTTCGGCATTCCGTGTCTCATC
GCTGTCGCCGCCATCGACCCCGGCAACCTCGAGCTTGACCTGCAGGCCGG
CCACGCCCTGGGCTACTCGCTCATCTGGGTCATCCTGTTTTCCAGCGTGC
TCGGATGGATTCTGCAGTCTCTGGTCGCCCACCTCACCATTTGCTCGCGC
AAGCCGCTTGCCGCTCTTTTGGCACAGGTCTACCGCCACGACCGGCTCCT
GTCCATCTCCCTGTTTGTCGTGGCTGAACTCTCAGTCATCGCTTTTGACG
TCGCCGAAGTCGTCGGCACCGCCATAGCCCTGCAGCTTTTGTTCCACTTC
CCCCTGTGGCTTGGGATCATGTTGTCCGGTCTGGACACGTTGTTGGTCCT
GTTCGTGCAACGGAATGGTCTCAATCGCGTCGAGGCCCTCATCGAGTTCT
CATTGTTTCTGCTCGCCATCTGTCTGTTCTACGAGTTTGTCATGACTCGC
CCAGACATTTTTTCCATCATCAAGGGTTCTGTCGTGCCCAACTTGGGGCC
GGATCCACAGCAGGGTGCTATACTTGGCGTGGGAGTGCTCGGAAGCGTTG
TGATGGCGCACAACCTTTTTTTGCACAGCTGGCTGGTGCACGATCGAAAC
AACGAAACGCATCTTTCCGAGTACTCTTCTCAAGTATCGAGTGGCACTCG
ATTTTTGCGACGATCTTGCCGTTATGCCACAATCGAAGCAGGTGCCATTT
TCGTAGCCACCTACCTTATCAACACCTGCGTCGTCGCCATCACCGCAGCA
CTGCCGGAGAAAAGTTTGCGCTCCATTTCCCAATTGGGCCTGCAGGATGC
GGGCGCTCTCCTCCAATCCATATTGGGATCGAGGTTTGCCTCCACGGCCT
GGGCAATCGCTTTGTTGTGCAGCGGCCACGCTGCTACCGTTACCGGCGCT
TTGGCGAGCCAGGCCGTCTGCGAGGGATTTTGGAACATTCAGGGTCACCA
GACGTCCATGGTCATTCTCGCCAGCCGCGCAATAGCAATCTTTCCAGCTA
TGGCAGCAGCGCTTTTGGCTGGTGAAGACAGTGCCAACAAGCTTATCGTT
CTTTCGCAGGTCATTTTATCGCTCGCACTCCCTTTCGCTGTTATTCCTAT
GTTCAAGCTCTTAATTAACGTTGATCGCATCTCACATGGCCGCGTCATCA
ACAAAAAAATGTTGACTGCAGGCTACGTAGCGTTTGCGTTGATGATCGCC
GCAAACACGTATGTTTTCTATGACATGGTCAACGAGGTCAATAATCTTTT
CGGTTGTTTTGTGGCGTTTGGTGTCTGCCTTCTTGGTTTGTGGTCTCTTT
TTCTAATTGCAAAGCTTATAATCACTCCCGTTTACTTAACTGATGTACTA
ATGGCAACTGACTGGATACGGGAAAATGACGAAACGAAGCCTCTGCTAGC
TAACAACGAAGCCGATAGCAGTACCAAATTCGTGAAGGACGCATCCTATC
AACTACAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2231729..2233339-

>Gvermi6771.t1 ID=Gvermi6771.t1|Name=Gvermi6771.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1611bp|location=Sequence derived from alignment at ScGOVlb_88:2231729..2233339- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTCGTCAGACCTCGATGACGGCCAGCAGCCCGCTGCGGGCGTGGC
TACGTGCCGCCGCCATGCTGAGTGCGCCGGCCGCGCCTGCCGCCAACCCT
CCGCGTCGCTCGCCTCCTTCGTCACCACTTTCGGCATTCCGTGTCTCATC
GCTGTCGCCGCCATCGACCCCGGCAACCTCGAGCTTGACCTGCAGGCCGG
CCACGCCCTGGGCTACTCGCTCATCTGGGTCATCCTGTTTTCCAGCGTGC
TCGGATGGATTCTGCAGTCTCTGGTCGCCCACCTCACCATTTGCTCGCGC
AAGCCGCTTGCCGCTCTTTTGGCACAGGTCTACCGCCACGACCGGCTCCT
GTCCATCTCCCTGTTTGTCGTGGCTGAACTCTCAGTCATCGCTTTTGACG
TCGCCGAAGTCGTCGGCACCGCCATAGCCCTGCAGCTTTTGTTCCACTTC
CCCCTGTGGCTTGGGATCATGTTGTCCGGTCTGGACACGTTGTTGGTCCT
GTTCGTGCAACGGAATGGTCTCAATCGCGTCGAGGCCCTCATCGAGTTCT
CATTGTTTCTGCTCGCCATCTGTCTGTTCTACGAGTTTGTCATGACTCGC
CCAGACATTTTTTCCATCATCAAGGGTTCTGTCGTGCCCAACTTGGGGCC
GGATCCACAGCAGGGTGCTATACTTGGCGTGGGAGTGCTCGGAAGCGTTG
TGATGGCGCACAACCTTTTTTTGCACAGCTGGCTGGTGCACGATCGAAAC
AACGAAACGCATCTTTCCGAGTACTCTTCTCAAGTATCGAGTGGCACTCG
ATTTTTGCGACGATCTTGCCGTTATGCCACAATCGAAGCAGGTGCCATTT
TCGTAGCCACCTACCTTATCAACACCTGCGTCGTCGCCATCACCGCAGCA
CTGCCGGAGAAAAGTTTGCGCTCCATTTCCCAATTGGGCCTGCAGGATGC
GGGCGCTCTCCTCCAATCCATATTGGGATCGAGGTTTGCCTCCACGGCCT
GGGCAATCGCTTTGTTGTGCAGCGGCCACGCTGCTACCGTTACCGGCGCT
TTGGCGAGCCAGGCCGTCTGCGAGGGATTTTGGAACATTCAGGGTCACCA
GACGTCCATGGTCATTCTCGCCAGCCGCGCAATAGCAATCTTTCCAGCTA
TGGCAGCAGCGCTTTTGGCTGGTGAAGACAGTGCCAACAAGCTTATCGTT
CTTTCGCAGGTCATTTTATCGCTCGCACTCCCTTTCGCTGTTATTCCTAT
GTTCAAGCTCTTAATTAACGTTGATCGCATCTCACATGGCCGCGTCATCA
ACAAAAAAATGTTGACTGCAGGCTACGTAGCGTTTGCGTTGATGATCGCC
GCAAACACGTATGTTTTCTATGACATGGTCAACGAGGTCAATAATCTTTT
CGGTTGTTTTGTGGCGTTTGGTGTCTGCCTTCTTGGTTTGTGGTCTCTTT
TTCTAATTGCAAAGCTTATAATCACTCCCGTTTACTTAACTGATGTACTA
ATGGCAACTGACTGGATACGGGAAAATGACGAAACGAAGCCTCTGCTAGC
TAACAACGAAGCCGATAGCAGTACCAAATTCGTGAAGGACGCATCCTATC
AACTACAATAG
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