Gvermi6768.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6768.t1
Unique Name	Gvermi6768.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2218386..2219735 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	864702.OsccyDRAFT_2156
Preferred name	argJ
PFAMs	ArgJ
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00004,RC00064
KEGG ko	ko:K00620
KEGG Reaction	R00259,R02282
KEGG Pathway	ko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG Module	M00028
GOs	GO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	1.76e-146
EggNOG OGs	COG1364@1\|root,COG1364@2\|Bacteria,1G1H7@1117\|Cyanobacteria,1H844@1150\|Oscillatoriales
EC	2.3.1.1,2.3.1.35
Description	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
COG category	E
BiGG Reaction	iJN678.argJ
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6768	Gvermi6768	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2218386..2219735 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6768.t1.start1	Gvermi6768.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2218386..2218388 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6768.t1.CDS1	Gvermi6768.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2218386..2219735 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6768.t1.exon1	Gvermi6768.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2218386..2219735 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6768.t1.stop1	Gvermi6768.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2219733..2219735 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6768.t1	Gvermi6768.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2218386..2219735 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2218386..2219735+
coding sequence from alignment at ScGOVlb_88:2218386..2219735+

mRNA sequence

>Gvermi6768.t1 ID=Gvermi6768.t1|Name=Gvermi6768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=450bp
MALLGFHTSLLPPFGGRYFRQSACKLAPNMSVQIENGGVTAPKGFKAAGH
TAGFKPSGLPDLALVASEQHIPLPAAALFTKNIVRAAPVEISEQNLLKSK
GKIAAVVLNSGQANAGTGTDGYQDGYDTVQAAAESLGCQPENVFICSTGV
IGKRFDIEKMKKALPHIISSAKATLEGGHDAAKAIMTTDLKMKQVAFQDT
IAGKTVTVGGMCKGSGMIHPDMATMLAVITCDASVEHNLWNKMLKTAVDK
SFNAITVDGDSSTNDVVCGLCSGASGLTVNESGTEAQALQSLLNETCIFL
AKCIARDGEGATVLIEVRVKGAANDQDAARIARTITGSSLVKAAVFGHDP
NWGRIAAAAGRAKAGFDVSNLKISLGNHLLMENGNPLPFDAVAASNYMKQ
KAQADEEHYLTENDTVVIRVEVGNGPGEGVAWGCDLSYKYVEINAEYTT*

spliced messenger RNA

>Gvermi6768.t1 ID=Gvermi6768.t1|Name=Gvermi6768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at ScGOVlb_88:2218386..2219735+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTACTCGGCTTTCACACCTCCCTTCTACCTCCTTTTGGAGGGCG
ATATTTTCGCCAATCCGCATGCAAACTGGCACCAAACATGTCCGTTCAAA
TCGAAAACGGTGGCGTCACGGCCCCAAAAGGCTTTAAAGCAGCTGGTCAC
ACAGCAGGCTTTAAACCTTCTGGACTCCCAGATCTCGCACTCGTCGCATC
AGAGCAGCACATTCCACTACCCGCCGCAGCGCTCTTCACGAAAAACATCG
TGCGAGCCGCTCCCGTCGAGATCTCCGAGCAGAATTTACTCAAGAGCAAA
GGAAAAATCGCAGCCGTCGTGCTCAATTCAGGTCAGGCCAATGCCGGCAC
TGGAACAGATGGATACCAGGACGGATACGACACTGTGCAGGCTGCTGCCG
AAAGCCTTGGATGTCAACCGGAAAATGTCTTTATTTGCTCCACTGGTGTC
ATTGGGAAGCGATTCGATATTGAGAAGATGAAGAAAGCGTTGCCGCACAT
TATTTCATCCGCGAAAGCTACCTTGGAAGGAGGACATGATGCCGCAAAGG
CCATCATGACTACTGATTTGAAAATGAAGCAAGTTGCGTTTCAAGATACA
ATCGCGGGCAAAACCGTCACCGTTGGCGGCATGTGCAAGGGTTCCGGAAT
GATTCACCCCGATATGGCCACCATGCTCGCAGTCATAACTTGTGATGCGT
CCGTCGAGCACAATCTATGGAACAAAATGCTAAAGACCGCAGTGGATAAA
TCCTTTAACGCCATAACAGTTGACGGAGATTCTTCGACAAACGACGTCGT
TTGCGGTTTGTGCAGTGGAGCATCAGGTCTGACGGTGAACGAGAGTGGTA
CCGAAGCGCAGGCGTTGCAATCTTTGCTGAATGAAACATGCATTTTTCTA
GCCAAATGCATTGCAAGAGACGGAGAAGGGGCAACTGTTCTAATCGAAGT
TCGAGTTAAAGGTGCTGCAAATGATCAAGATGCAGCGCGAATCGCGCGAA
CGATCACGGGATCGAGCTTGGTCAAGGCAGCTGTGTTTGGACATGATCCC
AACTGGGGAAGAATAGCTGCCGCCGCCGGGAGGGCAAAAGCAGGTTTTGA
TGTTTCAAATCTGAAGATTAGCCTTGGCAACCACCTGCTCATGGAGAACG
GAAATCCTCTACCGTTTGATGCTGTTGCAGCTAGTAACTATATGAAACAA
AAGGCCCAAGCTGATGAAGAGCACTACCTGACCGAGAACGACACTGTGGT
AATTAGAGTCGAAGTTGGCAATGGCCCTGGTGAGGGCGTGGCCTGGGGGT
GTGATCTATCTTACAAATACGTAGAGATCAACGCCGAATATACAACATGA

protein sequence of Gvermi6768.t1

>Gvermi6768.t1 ID=Gvermi6768.t1|Name=Gvermi6768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=450bp
MALLGFHTSLLPPFGGRYFRQSACKLAPNMSVQIENGGVTAPKGFKAAGH
TAGFKPSGLPDLALVASEQHIPLPAAALFTKNIVRAAPVEISEQNLLKSK
GKIAAVVLNSGQANAGTGTDGYQDGYDTVQAAAESLGCQPENVFICSTGV
IGKRFDIEKMKKALPHIISSAKATLEGGHDAAKAIMTTDLKMKQVAFQDT
IAGKTVTVGGMCKGSGMIHPDMATMLAVITCDASVEHNLWNKMLKTAVDK
SFNAITVDGDSSTNDVVCGLCSGASGLTVNESGTEAQALQSLLNETCIFL
AKCIARDGEGATVLIEVRVKGAANDQDAARIARTITGSSLVKAAVFGHDP
NWGRIAAAAGRAKAGFDVSNLKISLGNHLLMENGNPLPFDAVAASNYMKQ
KAQADEEHYLTENDTVVIRVEVGNGPGEGVAWGCDLSYKYVEINAEYTT*

mRNA from alignment at ScGOVlb_88:2218386..2219735+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6768.t1 ID=Gvermi6768.t1|Name=Gvermi6768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at ScGOVlb_88:2218386..2219735+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTACTCGGCTTTCACACCTCCCTTCTACCTCCTTTTGGAGGGCG
ATATTTTCGCCAATCCGCATGCAAACTGGCACCAAACATGTCCGTTCAAA
TCGAAAACGGTGGCGTCACGGCCCCAAAAGGCTTTAAAGCAGCTGGTCAC
ACAGCAGGCTTTAAACCTTCTGGACTCCCAGATCTCGCACTCGTCGCATC
AGAGCAGCACATTCCACTACCCGCCGCAGCGCTCTTCACGAAAAACATCG
TGCGAGCCGCTCCCGTCGAGATCTCCGAGCAGAATTTACTCAAGAGCAAA
GGAAAAATCGCAGCCGTCGTGCTCAATTCAGGTCAGGCCAATGCCGGCAC
TGGAACAGATGGATACCAGGACGGATACGACACTGTGCAGGCTGCTGCCG
AAAGCCTTGGATGTCAACCGGAAAATGTCTTTATTTGCTCCACTGGTGTC
ATTGGGAAGCGATTCGATATTGAGAAGATGAAGAAAGCGTTGCCGCACAT
TATTTCATCCGCGAAAGCTACCTTGGAAGGAGGACATGATGCCGCAAAGG
CCATCATGACTACTGATTTGAAAATGAAGCAAGTTGCGTTTCAAGATACA
ATCGCGGGCAAAACCGTCACCGTTGGCGGCATGTGCAAGGGTTCCGGAAT
GATTCACCCCGATATGGCCACCATGCTCGCAGTCATAACTTGTGATGCGT
CCGTCGAGCACAATCTATGGAACAAAATGCTAAAGACCGCAGTGGATAAA
TCCTTTAACGCCATAACAGTTGACGGAGATTCTTCGACAAACGACGTCGT
TTGCGGTTTGTGCAGTGGAGCATCAGGTCTGACGGTGAACGAGAGTGGTA
CCGAAGCGCAGGCGTTGCAATCTTTGCTGAATGAAACATGCATTTTTCTA
GCCAAATGCATTGCAAGAGACGGAGAAGGGGCAACTGTTCTAATCGAAGT
TCGAGTTAAAGGTGCTGCAAATGATCAAGATGCAGCGCGAATCGCGCGAA
CGATCACGGGATCGAGCTTGGTCAAGGCAGCTGTGTTTGGACATGATCCC
AACTGGGGAAGAATAGCTGCCGCCGCCGGGAGGGCAAAAGCAGGTTTTGA
TGTTTCAAATCTGAAGATTAGCCTTGGCAACCACCTGCTCATGGAGAACG
GAAATCCTCTACCGTTTGATGCTGTTGCAGCTAGTAACTATATGAAACAA
AAGGCCCAAGCTGATGAAGAGCACTACCTGACCGAGAACGACACTGTGGT
AATTAGAGTCGAAGTTGGCAATGGCCCTGGTGAGGGCGTGGCCTGGGGGT
GTGATCTATCTTACAAATACGTAGAGATCAACGCCGAATATACAACATGA

Coding sequence (CDS) from alignment at ScGOVlb_88:2218386..2219735+

>Gvermi6768.t1 ID=Gvermi6768.t1|Name=Gvermi6768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1350bp|location=Sequence derived from alignment at ScGOVlb_88:2218386..2219735+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTACTCGGCTTTCACACCTCCCTTCTACCTCCTTTTGGAGGGCG
ATATTTTCGCCAATCCGCATGCAAACTGGCACCAAACATGTCCGTTCAAA
TCGAAAACGGTGGCGTCACGGCCCCAAAAGGCTTTAAAGCAGCTGGTCAC
ACAGCAGGCTTTAAACCTTCTGGACTCCCAGATCTCGCACTCGTCGCATC
AGAGCAGCACATTCCACTACCCGCCGCAGCGCTCTTCACGAAAAACATCG
TGCGAGCCGCTCCCGTCGAGATCTCCGAGCAGAATTTACTCAAGAGCAAA
GGAAAAATCGCAGCCGTCGTGCTCAATTCAGGTCAGGCCAATGCCGGCAC
TGGAACAGATGGATACCAGGACGGATACGACACTGTGCAGGCTGCTGCCG
AAAGCCTTGGATGTCAACCGGAAAATGTCTTTATTTGCTCCACTGGTGTC
ATTGGGAAGCGATTCGATATTGAGAAGATGAAGAAAGCGTTGCCGCACAT
TATTTCATCCGCGAAAGCTACCTTGGAAGGAGGACATGATGCCGCAAAGG
CCATCATGACTACTGATTTGAAAATGAAGCAAGTTGCGTTTCAAGATACA
ATCGCGGGCAAAACCGTCACCGTTGGCGGCATGTGCAAGGGTTCCGGAAT
GATTCACCCCGATATGGCCACCATGCTCGCAGTCATAACTTGTGATGCGT
CCGTCGAGCACAATCTATGGAACAAAATGCTAAAGACCGCAGTGGATAAA
TCCTTTAACGCCATAACAGTTGACGGAGATTCTTCGACAAACGACGTCGT
TTGCGGTTTGTGCAGTGGAGCATCAGGTCTGACGGTGAACGAGAGTGGTA
CCGAAGCGCAGGCGTTGCAATCTTTGCTGAATGAAACATGCATTTTTCTA
GCCAAATGCATTGCAAGAGACGGAGAAGGGGCAACTGTTCTAATCGAAGT
TCGAGTTAAAGGTGCTGCAAATGATCAAGATGCAGCGCGAATCGCGCGAA
CGATCACGGGATCGAGCTTGGTCAAGGCAGCTGTGTTTGGACATGATCCC
AACTGGGGAAGAATAGCTGCCGCCGCCGGGAGGGCAAAAGCAGGTTTTGA
TGTTTCAAATCTGAAGATTAGCCTTGGCAACCACCTGCTCATGGAGAACG
GAAATCCTCTACCGTTTGATGCTGTTGCAGCTAGTAACTATATGAAACAA
AAGGCCCAAGCTGATGAAGAGCACTACCTGACCGAGAACGACACTGTGGT
AATTAGAGTCGAAGTTGGCAATGGCCCTGGTGAGGGCGTGGCCTGGGGGT
GTGATCTATCTTACAAATACGTAGAGATCAACGCCGAATATACAACATGA