Gvermi6767.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6767.t1
Unique NameGvermi6767.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2217233..2217793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59894.ENSFALP00000013282
Preferred nameADAT2
PFAMsMafB19-deam,dCMP_cyt_deam_1
Max annot lvl33208|Metazoa
KEGG koko:K15441
GOsGO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1902494
Evalue7.03e-36
EggNOG OGsCOG0590@1|root,KOG1018@2759|Eukaryota,39W0M@33154|Opisthokonta,3BJII@33208|Metazoa,3D0W4@33213|Bilateria,480KW@7711|Chordata,492UP@7742|Vertebrata,4GU33@8782|Aves
Descriptionadenosine deaminase
COG categoryF
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6767Gvermi6767Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2217233..2217793 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6767.t1.start1Gvermi6767.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2217233..2217235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6767.t1.CDS1Gvermi6767.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2217233..2217793 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6767.t1.exon1Gvermi6767.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2217233..2217793 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6767.t1.stop1Gvermi6767.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2217791..2217793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6767.t1Gvermi6767.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2217233..2217793 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6767.t1 ID=Gvermi6767.t1|Name=Gvermi6767.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=187bp
LRGARILRRDSGGEIGDCLTWLCVCGVMQLAIEEARRALRRGEVPVGCVL
RTADGTTVATGSNRTNERGNATSHAEMVAFEQLSKLHKRFEKGQLTLYVT
CEPCIMCAAAIVQMQVIGRIVYGCSNPRFGGCGSVRALRMYQNSSNVHIP
SVQSGVDAATAVQLLEQFYKTTNPHAPKPKRRKVKL*
back to top

spliced messenger RNA

>Gvermi6767.t1 ID=Gvermi6767.t1|Name=Gvermi6767.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=561bp|location=Sequence derived from alignment at ScGOVlb_88:2217233..2217793+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCGTGGCGCTCGCATCCTGCGCCGCGACTCGGGCGGAGAAATTGGAGA
CTGCCTGACGTGGTTGTGCGTGTGCGGTGTGATGCAGCTGGCCATTGAGG
AGGCGCGGAGAGCGCTGCGGCGCGGCGAGGTGCCTGTCGGCTGCGTGCTC
CGGACGGCGGACGGCACCACGGTGGCAACCGGCTCGAACCGCACCAACGA
GCGGGGAAACGCCACCTCCCACGCGGAGATGGTTGCCTTCGAGCAGTTGT
CTAAACTGCACAAGCGTTTCGAAAAGGGCCAGCTCACGCTGTACGTCACC
TGCGAACCGTGTATCATGTGCGCCGCAGCGATCGTTCAAATGCAGGTGAT
CGGGCGCATCGTGTACGGCTGCTCCAACCCGCGCTTCGGCGGCTGCGGGT
CGGTCCGAGCTCTGCGCATGTACCAAAACAGCAGCAACGTGCACATTCCG
TCCGTGCAAAGCGGCGTCGACGCCGCCACTGCCGTGCAACTGCTCGAGCA
GTTTTACAAAACCACCAACCCGCACGCGCCTAAGCCCAAGAGGAGGAAAG
TGAAGCTGTGA
back to top

protein sequence of Gvermi6767.t1

>Gvermi6767.t1 ID=Gvermi6767.t1|Name=Gvermi6767.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=187bp
LRGARILRRDSGGEIGDCLTWLCVCGVMQLAIEEARRALRRGEVPVGCVL
RTADGTTVATGSNRTNERGNATSHAEMVAFEQLSKLHKRFEKGQLTLYVT
CEPCIMCAAAIVQMQVIGRIVYGCSNPRFGGCGSVRALRMYQNSSNVHIP
SVQSGVDAATAVQLLEQFYKTTNPHAPKPKRRKVKL*
back to top

mRNA from alignment at ScGOVlb_88:2217233..2217793+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6767.t1 ID=Gvermi6767.t1|Name=Gvermi6767.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=561bp|location=Sequence derived from alignment at ScGOVlb_88:2217233..2217793+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCGTGGCGCTCGCATCCTGCGCCGCGACTCGGGCGGAGAAATTGGAGA
CTGCCTGACGTGGTTGTGCGTGTGCGGTGTGATGCAGCTGGCCATTGAGG
AGGCGCGGAGAGCGCTGCGGCGCGGCGAGGTGCCTGTCGGCTGCGTGCTC
CGGACGGCGGACGGCACCACGGTGGCAACCGGCTCGAACCGCACCAACGA
GCGGGGAAACGCCACCTCCCACGCGGAGATGGTTGCCTTCGAGCAGTTGT
CTAAACTGCACAAGCGTTTCGAAAAGGGCCAGCTCACGCTGTACGTCACC
TGCGAACCGTGTATCATGTGCGCCGCAGCGATCGTTCAAATGCAGGTGAT
CGGGCGCATCGTGTACGGCTGCTCCAACCCGCGCTTCGGCGGCTGCGGGT
CGGTCCGAGCTCTGCGCATGTACCAAAACAGCAGCAACGTGCACATTCCG
TCCGTGCAAAGCGGCGTCGACGCCGCCACTGCCGTGCAACTGCTCGAGCA
GTTTTACAAAACCACCAACCCGCACGCGCCTAAGCCCAAGAGGAGGAAAG
TGAAGCTGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2217233..2217793+

>Gvermi6767.t1 ID=Gvermi6767.t1|Name=Gvermi6767.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=561bp|location=Sequence derived from alignment at ScGOVlb_88:2217233..2217793+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCGTGGCGCTCGCATCCTGCGCCGCGACTCGGGCGGAGAAATTGGAGA
CTGCCTGACGTGGTTGTGCGTGTGCGGTGTGATGCAGCTGGCCATTGAGG
AGGCGCGGAGAGCGCTGCGGCGCGGCGAGGTGCCTGTCGGCTGCGTGCTC
CGGACGGCGGACGGCACCACGGTGGCAACCGGCTCGAACCGCACCAACGA
GCGGGGAAACGCCACCTCCCACGCGGAGATGGTTGCCTTCGAGCAGTTGT
CTAAACTGCACAAGCGTTTCGAAAAGGGCCAGCTCACGCTGTACGTCACC
TGCGAACCGTGTATCATGTGCGCCGCAGCGATCGTTCAAATGCAGGTGAT
CGGGCGCATCGTGTACGGCTGCTCCAACCCGCGCTTCGGCGGCTGCGGGT
CGGTCCGAGCTCTGCGCATGTACCAAAACAGCAGCAACGTGCACATTCCG
TCCGTGCAAAGCGGCGTCGACGCCGCCACTGCCGTGCAACTGCTCGAGCA
GTTTTACAAAACCACCAACCCGCACGCGCCTAAGCCCAAGAGGAGGAAAG
TGAAGCTGTGA
back to top