Gvermi6763.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6763.t1
Unique NameGvermi6763.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length521
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2210788..2212558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173022.Cri9333_4516
Preferred namegatB
PFAMsGatB_N,GatB_Yqey
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00010
KEGG koko:K02434
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006139,GO:0006399,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0034641,GO:0034660,GO:0043038,GO:0043039,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564
Evalue3.24e-190
EggNOG OGsCOG0064@1|root,COG0064@2|Bacteria,1G0H0@1117|Cyanobacteria,1H7I7@1150|Oscillatoriales
EC6.3.5.6,6.3.5.7
DescriptionAllows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6763Gvermi6763Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2210788..2212558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6763.t1Gvermi6763.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2210788..2212558 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6763.t1.stop1Gvermi6763.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2210788..2210790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6763.t1.CDS1Gvermi6763.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2210788..2210895 -
Gvermi6763.t1.CDS2Gvermi6763.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2210965..2211058 -
Gvermi6763.t1.CDS3Gvermi6763.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2211198..2212558 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6763.t1.exon1Gvermi6763.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2210788..2210895 -
Gvermi6763.t1.exon2Gvermi6763.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2210965..2211058 -
Gvermi6763.t1.exon3Gvermi6763.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2211198..2212558 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6763.t1.intron1Gvermi6763.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2210896..2210964 -
Gvermi6763.t1.intron2Gvermi6763.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2211059..2211197 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6763.t1.start1Gvermi6763.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2212556..2212558 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6763.t1 ID=Gvermi6763.t1|Name=Gvermi6763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=521bp
MAITQAPETNRKGRSKKERSASGKREKKGSMSPGLLKALEKYEPIIGIEM
HVQLSTKSKAYCNCSTKTVRTPNTNICPVCMGHPGALPVVNSKVVELAAK
AGMALGCSIAENCRFDRKNYYYVDTPKNYQITQDTYPIAKNGSLQLVSLG
KQIGITRLHMEEDSAKMTHEGVGAAGRLTDSTHSLLDFNRSGIPLVEIVS
EPDIRTGSEAAEYGQELQRVLRYVGISDCNMQDGSLRCDVNISIRRKGSA
TFGTKVELKNLNSFASAQKSIDFEIERQASILDSGGTVTLETRTWDEKAC
ETKSMRVKEGASDYRYFPEPDIPPLYITQDQLKEWRQGMPELPAEKRERY
QRDFALSGYDAFLLSDDVLTAKYFEASIDAGADPKQSANWIMGDITKVLK
NEKLNLSLCKLTPQNLANMIGLIEDGVISGKIAKDLIAELVMKGGVPSEI
VEERGLKLISDPQIIRELAAKVVEENPKELAAFRDGKNRLFGFFVGKTLA
ASGGKGDPVVINSILKEMLE*
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spliced messenger RNA

>Gvermi6763.t1 ID=Gvermi6763.t1|Name=Gvermi6763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at ScGOVlb_88:2210788..2212558- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATCACTCAAGCACCTGAAACAAATAGGAAAGGGCGCTCCAAGAA
AGAGCGAAGCGCATCTGGGAAAAGGGAAAAGAAAGGTTCCATGTCCCCTG
GGCTTTTAAAAGCCCTCGAAAAGTATGAACCGATTATAGGTATTGAAATG
CATGTTCAACTGTCGACCAAGTCAAAAGCATATTGCAATTGTTCCACCAA
AACAGTGCGAACTCCAAACACCAATATCTGTCCAGTTTGTATGGGCCATC
CGGGGGCTCTGCCGGTGGTAAACTCCAAAGTTGTAGAACTTGCTGCTAAG
GCAGGTATGGCATTGGGATGCTCGATAGCAGAAAACTGCCGCTTTGATCG
GAAGAATTACTACTACGTTGATACACCCAAGAACTATCAAATAACACAAG
ATACCTATCCGATTGCGAAAAACGGAAGTTTGCAACTGGTTTCACTTGGT
AAACAGATCGGAATAACTCGATTACATATGGAAGAAGATTCAGCTAAAAT
GACGCATGAAGGAGTGGGAGCGGCAGGACGCCTTACAGACTCCACTCATT
CACTGCTTGATTTCAACAGAAGTGGGATTCCTCTCGTGGAAATTGTCAGC
GAGCCCGATATCCGTACAGGTTCTGAAGCGGCCGAGTACGGACAAGAGCT
TCAACGAGTTCTGAGATACGTTGGCATCAGTGATTGTAACATGCAAGATG
GAAGTCTTCGATGTGATGTTAATATTTCCATACGACGAAAAGGAAGTGCA
ACATTTGGGACCAAAGTCGAACTCAAAAACCTCAACTCCTTCGCATCCGC
GCAAAAGTCAATTGACTTTGAAATAGAAAGACAGGCAAGCATACTCGATA
GCGGCGGGACAGTTACCCTAGAGACAAGAACTTGGGACGAGAAGGCGTGC
GAAACTAAGTCTATGAGGGTGAAAGAAGGTGCTTCGGACTACAGGTATTT
TCCGGAACCAGACATTCCTCCGCTCTATATCACGCAAGATCAATTGAAAG
AGTGGAGACAGGGAATGCCGGAACTACCGGCCGAAAAGAGAGAAAGATAC
CAGCGTGACTTTGCGTTGTCTGGTTATGATGCCTTCCTGCTCTCTGATGA
TGTGCTTACAGCAAAGTATTTTGAAGCGTCCATTGATGCCGGAGCGGATC
CTAAGCAATCTGCGAACTGGATAATGGGCGATATCACGAAAGTATTGAAG
AACGAAAAGCTGAATCTCAGTCTTTGTAAGCTTACTCCTCAAAATCTGGC
TAATATGATTGGTCTTATTGAAGATGGAGTTATAAGTGGAAAGATTGCAA
AGGATTTGATAGCTGAACTAGTTATGAAGGGAGGCGTTCCATCCGAAATT
GTCGAAGAAAGGGGTCTAAAGTTGATATCAGACCCTCAGATTATTCGCGA
ACTGGCAGCAAAAGTTGTCGAAGAAAATCCGAAGGAACTAGCCGCATTTA
GAGATGGTAAAAACCGGTTGTTTGGGTTCTTTGTGGGCAAGACGCTTGCT
GCTTCAGGTGGAAAAGGCGATCCCGTGGTGATAAACTCAATTTTAAAGGA
GATGCTGGAATAA
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protein sequence of Gvermi6763.t1

>Gvermi6763.t1 ID=Gvermi6763.t1|Name=Gvermi6763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=521bp
MAITQAPETNRKGRSKKERSASGKREKKGSMSPGLLKALEKYEPIIGIEM
HVQLSTKSKAYCNCSTKTVRTPNTNICPVCMGHPGALPVVNSKVVELAAK
AGMALGCSIAENCRFDRKNYYYVDTPKNYQITQDTYPIAKNGSLQLVSLG
KQIGITRLHMEEDSAKMTHEGVGAAGRLTDSTHSLLDFNRSGIPLVEIVS
EPDIRTGSEAAEYGQELQRVLRYVGISDCNMQDGSLRCDVNISIRRKGSA
TFGTKVELKNLNSFASAQKSIDFEIERQASILDSGGTVTLETRTWDEKAC
ETKSMRVKEGASDYRYFPEPDIPPLYITQDQLKEWRQGMPELPAEKRERY
QRDFALSGYDAFLLSDDVLTAKYFEASIDAGADPKQSANWIMGDITKVLK
NEKLNLSLCKLTPQNLANMIGLIEDGVISGKIAKDLIAELVMKGGVPSEI
VEERGLKLISDPQIIRELAAKVVEENPKELAAFRDGKNRLFGFFVGKTLA
ASGGKGDPVVINSILKEMLE*
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mRNA from alignment at ScGOVlb_88:2210788..2212558-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6763.t1 ID=Gvermi6763.t1|Name=Gvermi6763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1771bp|location=Sequence derived from alignment at ScGOVlb_88:2210788..2212558- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAATCACTCAAGCACCTGAAACAAATAGGAAAGGGCGCTCCAAGAA
AGAGCGAAGCGCATCTGGGAAAAGGGAAAAGAAAGGTTCCATGTCCCCTG
GGCTTTTAAAAGCCCTCGAAAAGTATGAACCGATTATAGGTATTGAAATG
CATGTTCAACTGTCGACCAAGTCAAAAGCATATTGCAATTGTTCCACCAA
AACAGTGCGAACTCCAAACACCAATATCTGTCCAGTTTGTATGGGCCATC
CGGGGGCTCTGCCGGTGGTAAACTCCAAAGTTGTAGAACTTGCTGCTAAG
GCAGGTATGGCATTGGGATGCTCGATAGCAGAAAACTGCCGCTTTGATCG
GAAGAATTACTACTACGTTGATACACCCAAGAACTATCAAATAACACAAG
ATACCTATCCGATTGCGAAAAACGGAAGTTTGCAACTGGTTTCACTTGGT
AAACAGATCGGAATAACTCGATTACATATGGAAGAAGATTCAGCTAAAAT
GACGCATGAAGGAGTGGGAGCGGCAGGACGCCTTACAGACTCCACTCATT
CACTGCTTGATTTCAACAGAAGTGGGATTCCTCTCGTGGAAATTGTCAGC
GAGCCCGATATCCGTACAGGTTCTGAAGCGGCCGAGTACGGACAAGAGCT
TCAACGAGTTCTGAGATACGTTGGCATCAGTGATTGTAACATGCAAGATG
GAAGTCTTCGATGTGATGTTAATATTTCCATACGACGAAAAGGAAGTGCA
ACATTTGGGACCAAAGTCGAACTCAAAAACCTCAACTCCTTCGCATCCGC
GCAAAAGTCAATTGACTTTGAAATAGAAAGACAGGCAAGCATACTCGATA
GCGGCGGGACAGTTACCCTAGAGACAAGAACTTGGGACGAGAAGGCGTGC
GAAACTAAGTCTATGAGGGTGAAAGAAGGTGCTTCGGACTACAGGTATTT
TCCGGAACCAGACATTCCTCCGCTCTATATCACGCAAGATCAATTGAAAG
AGTGGAGACAGGGAATGCCGGAACTACCGGCCGAAAAGAGAGAAAGATAC
CAGCGTGACTTTGCGTTGTCTGGTTATGATGCCTTCCTGCTCTCTGATGA
TGTGCTTACAGCAAAGTATTTTGAAGCGTCCATTGATGCCGGAGCGGATC
CTAAGCAATCTGCGAACTGGATAATGGGCGATATCACGAAAGTATTGAAG
AACGAAAAGCTGAATCTCAGTCTTTGTAAGCTTACTCCTCAAAATCTGGC
TAATATGATTGGTCTTATTGAAGATGGAGTTATAAGTGGAAAGATTGCAA
AGGATTTGATAGCTGAACTAGTTATGAAGGGAGGCGTTCCATCCGAAATT
GTCGAAGAAAGGTACGTATTTGAAACTCTTGAAGCCGTTCAATTGCTTTC
AGCATTTCCTGTAGGAATGGCAGGAGGTTATTTTCCATGATTTCTGACAC
TCTTTGCATGCGGACACCAACATCATTACAATCTTTTTATTCTTGTACAG
GGGTCTAAAGTTGATATCAGACCCTCAGATTATTCGCGAACTGGCAGCAA
AAGTTGTCGAAGAAAATCCGAAGGAACTAGCCGCATTTAGAGATGTACGT
ATCGATACATTTTTTGTCATGAGTCATTTGCAACTCTGACAAGTTTCACG
TTCTTCTTCACAGGGTAAAAACCGGTTGTTTGGGTTCTTTGTGGGCAAGA
CGCTTGCTGCTTCAGGTGGAAAAGGCGATCCCGTGGTGATAAACTCAATT
TTAAAGGAGATGCTGGAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2210788..2212558-

>Gvermi6763.t1 ID=Gvermi6763.t1|Name=Gvermi6763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1563bp|location=Sequence derived from alignment at ScGOVlb_88:2210788..2212558- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAATCACTCAAGCACCTGAAACAAATAGGAAAGGGCGCTCCAAGAA
AGAGCGAAGCGCATCTGGGAAAAGGGAAAAGAAAGGTTCCATGTCCCCTG
GGCTTTTAAAAGCCCTCGAAAAGTATGAACCGATTATAGGTATTGAAATG
CATGTTCAACTGTCGACCAAGTCAAAAGCATATTGCAATTGTTCCACCAA
AACAGTGCGAACTCCAAACACCAATATCTGTCCAGTTTGTATGGGCCATC
CGGGGGCTCTGCCGGTGGTAAACTCCAAAGTTGTAGAACTTGCTGCTAAG
GCAGGTATGGCATTGGGATGCTCGATAGCAGAAAACTGCCGCTTTGATCG
GAAGAATTACTACTACGTTGATACACCCAAGAACTATCAAATAACACAAG
ATACCTATCCGATTGCGAAAAACGGAAGTTTGCAACTGGTTTCACTTGGT
AAACAGATCGGAATAACTCGATTACATATGGAAGAAGATTCAGCTAAAAT
GACGCATGAAGGAGTGGGAGCGGCAGGACGCCTTACAGACTCCACTCATT
CACTGCTTGATTTCAACAGAAGTGGGATTCCTCTCGTGGAAATTGTCAGC
GAGCCCGATATCCGTACAGGTTCTGAAGCGGCCGAGTACGGACAAGAGCT
TCAACGAGTTCTGAGATACGTTGGCATCAGTGATTGTAACATGCAAGATG
GAAGTCTTCGATGTGATGTTAATATTTCCATACGACGAAAAGGAAGTGCA
ACATTTGGGACCAAAGTCGAACTCAAAAACCTCAACTCCTTCGCATCCGC
GCAAAAGTCAATTGACTTTGAAATAGAAAGACAGGCAAGCATACTCGATA
GCGGCGGGACAGTTACCCTAGAGACAAGAACTTGGGACGAGAAGGCGTGC
GAAACTAAGTCTATGAGGGTGAAAGAAGGTGCTTCGGACTACAGGTATTT
TCCGGAACCAGACATTCCTCCGCTCTATATCACGCAAGATCAATTGAAAG
AGTGGAGACAGGGAATGCCGGAACTACCGGCCGAAAAGAGAGAAAGATAC
CAGCGTGACTTTGCGTTGTCTGGTTATGATGCCTTCCTGCTCTCTGATGA
TGTGCTTACAGCAAAGTATTTTGAAGCGTCCATTGATGCCGGAGCGGATC
CTAAGCAATCTGCGAACTGGATAATGGGCGATATCACGAAAGTATTGAAG
AACGAAAAGCTGAATCTCAGTCTTTGTAAGCTTACTCCTCAAAATCTGGC
TAATATGATTGGTCTTATTGAAGATGGAGTTATAAGTGGAAAGATTGCAA
AGGATTTGATAGCTGAACTAGTTATGAAGGGAGGCGTTCCATCCGAAATT
GTCGAAGAAAGGGGTCTAAAGTTGATATCAGACCCTCAGATTATTCGCGA
ACTGGCAGCAAAAGTTGTCGAAGAAAATCCGAAGGAACTAGCCGCATTTA
GAGATGGTAAAAACCGGTTGTTTGGGTTCTTTGTGGGCAAGACGCTTGCT
GCTTCAGGTGGAAAAGGCGATCCCGTGGTGATAAACTCAATTTTAAAGGA
GATGCTGGAATAA
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