Gvermi6760.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6760.t1
Unique NameGvermi6760.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length103
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2172827..2175438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5722.XP_001321336.1
Preferred nameHORMAD1
PFAMsHORMA
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K03294,ko:K12778,ko:K15620,ko:K17616
KEGG TC2.A.3.2
KEGG ReactionR03656
KEGG Pathwayko00970,ko04113,map00970,map04113
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000075,GO:0000217,GO:0000226,GO:0000228,GO:0000280,GO:0000400,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000819,GO:0001701,GO:0001824,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004721,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007062,GO:0007098,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008150,GO:0008152,GO:0009553,GO:0009554,GO:0009555,GO:0009556,GO:0009790,GO:0009792,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030997,GO:0031023,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0033313,GO:0034293,GO:0034641,GO:0035825,GO:0036211,GO:0040020,GO:0042138,GO:0042578,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045835,GO:0046483,GO:0046605,GO:0048229,GO:0048232,GO:0048236,GO:0048285,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051026,GO:0051128,GO:0051129,GO:0051177,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051493,GO:0051598,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0060629,GO:0060631,GO:0061982,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1903046,GO:2000241,GO:2000242
Evalue0.000697
EggNOG OGsKOG4652@1|root,KOG4652@2759|Eukaryota
EC6.1.1.5
Descriptionregulation of homologous chromosome segregation
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6760Gvermi6760Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2172827..2175438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6760.t1Gvermi6760.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2172827..2175438 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6760.t1.start1Gvermi6760.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2172827..2172829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6760.t1.CDS1Gvermi6760.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2172827..2173030 +
Gvermi6760.t1.CDS2Gvermi6760.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2173116..2173198 +
Gvermi6760.t1.CDS3Gvermi6760.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2175417..2175438 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6760.t1.exon1Gvermi6760.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2172827..2173030 +
Gvermi6760.t1.exon2Gvermi6760.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2173116..2173198 +
Gvermi6760.t1.exon3Gvermi6760.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2175417..2175438 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6760.t1.intron1Gvermi6760.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2173031..2173115 +
Gvermi6760.t1.intron2Gvermi6760.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2173199..2175416 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6760.t1.stop1Gvermi6760.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2175436..2175438 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6760.t1 ID=Gvermi6760.t1|Name=Gvermi6760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=103bp
MALLAPAVANSASCSPHLHLLLLPSSPQQTETVASKTITPVQSKALVKNM
LRAAFSSVAYIRNLFDKKNFEKTKIGTTAFYKIKDQCAGNVARYRNSGEC
DL*
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spliced messenger RNA

>Gvermi6760.t1 ID=Gvermi6760.t1|Name=Gvermi6760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=309bp|location=Sequence derived from alignment at ScGOVlb_88:2172827..2175438+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTGCTTGCGCCTGCTGTTGCTAACTCCGCTTCGTGTTCTCCCCA
TCTCCACCTCTTGCTGCTGCCGTCTTCTCCACAGCAAACCGAAACCGTCG
CTTCCAAGACCATCACCCCCGTGCAGAGCAAAGCGCTCGTCAAGAATATG
CTGCGTGCCGCCTTCTCCTCCGTCGCCTACATTCGCAACTTGTTTGACAA
AAAGAACTTTGAGAAGACCAAAATCGGCACCACCGCCTTCTACAAGATCA
AGGACCAGTGCGCCGGAAACGTCGCGCGCTACAGGAATTCTGGCGAGTGT
GACTTGTGA
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protein sequence of Gvermi6760.t1

>Gvermi6760.t1 ID=Gvermi6760.t1|Name=Gvermi6760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=103bp
MALLAPAVANSASCSPHLHLLLLPSSPQQTETVASKTITPVQSKALVKNM
LRAAFSSVAYIRNLFDKKNFEKTKIGTTAFYKIKDQCAGNVARYRNSGEC
DL*
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mRNA from alignment at ScGOVlb_88:2172827..2175438+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6760.t1 ID=Gvermi6760.t1|Name=Gvermi6760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2612bp|location=Sequence derived from alignment at ScGOVlb_88:2172827..2175438+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACTGCTTGCGCCTGCTGTTGCTAACTCCGCTTCGTGTTCTCCCCA
TCTCCACCTCTTGCTGCTGCCGTCTTCTCCACAGCAAACCGAAACCGTCG
CTTCCAAGACCATCACCCCCGTGCAGAGCAAAGCGCTCGTCAAGAATATG
CTGCGTGCCGCCTTCTCCTCCGTCGCCTACATTCGCAACTTGTTTGACAA
AAAGGTACGTCACAGCCGCACCGGCCGCGCGCGCCCGCCTGTTTTGCCCG
CTCACCGCTGCGTGCCGCCGTGTCCATCCGCGCCCGCAGAACTTTGAGAA
GACCAAAATCGGCACCACCGCCTTCTACAAGATCAAGGACCAGTGCGCCG
GAAACGTCGCGCGCTACAGGAAGTGGTTGAACGACGGCGTGTTCCACGCG
CTGGCGCGCAAGTATCTGGCCGTCGCGCGCATCGAGATCTACAAGCACcc
cgcgcccggcgcgcgcggccgcggccgcgcgcccgcgtgcgccagcgagc
ACCTGCTCGAGTGCTACGCGTTCCACGTCGCGTAcggcggcggcggcggc
ggcggcggcgACGACGACGAGGCGCGCCTGCAGCTCGCCGTGGCGCGGCA
CGCGCCCGACAACGAGGTCGCGCGCGTCAGCGTCAAGGAGGGCTCGCGCG
AGATGCTCAGCCGCCTCATGGACGTGACGCGCGCGCTGGGCGCGCTGCCG
TCGCTGCGCGTCGTCAGCGTCAAGGTACGACGGCcgccgcgccccccgcg
ccccgcgcgcccgcgcgccgccccGACTGACCTGGCGCGCAGCTGCTCTT
CACCGCGGACACGCCCGCACACTACCAGCCGCCGCTGTTCTCGCCGGTGC
GCGACGACGTGTGGTTTGTGGGCGACGCCATCGACGTGGTGACCGGCAGC
GTGGCCACGCCGTTCCACAGCCTCAAGATGCAGGTGTTTGCGCGCAACAC
CGCGGAGCAGCGCGCGACGCTGTCGGCGCTCAAGCAAATCGCGGGCGGAG
GCGCTGCGGACACGGCTGCCGCGCCCGCCTCAGCGCGGCGGCGCCACGGG
GCGCGGGCGGGCGCGGCCTCGCAGGACGGCGCGGCCTCGCAGGACGGCGC
GGCCTCGCAGGACGGCGCGGCCTCGCAGGACGGCGCGAGCGTGGAGGATG
GCGCGAGCGTGGAGGACGGCGCGGCGGCAGGGGACGGCGCGGCGGCAGGG
GACGGCGCGGCGGCAGAGGAAAGCGTGGTGCGCGAGAAAGCGCCGACGCC
GGAGGCGGCGCGCGCAGAGGAAACGGTACGAGAGAGCGGGGCGGAGGTGG
GTGGTGGCGCGGGGCGCGCGGGGCGCGCGGCGGATGCGAGCGGGAGCGCG
CGCGGCGAAGGCAGGCGGCCGTCGAGCGGGGGGCGCGCGAGGGAGAGTGC
GCGGCTGGCGGACGATGGTGCGCGGGCGCGGAGGACGAGCAGGGGCGGAG
ACGGGCGCCAGGGGTTGGGCGCAGAGGCGGCGACGCAAGACAGCGACTTT
GAGGCGACGCAGACCAGGCGGGGTGGCAAGAGGAAGATGAGCAGAGTGGA
AAAGTGTATCGTGGTGCGCAAGAGATGCCGGCAGTAGTTGTTGTGGGTTG
GAACGAGAGGCGGGTTTGGAAAGGTAAGGTGTATACACACGCGTCGATGA
TCGGGCGTGCAATGGGCGGCCGATGACTGTTTGGGAAAAGTGCCAAGGAG
GAACGAGCCATATTTACGATGATGATTGGCTATGGGGAGTATAACGTAGA
AGACAGCTGTGTGCAGCGGCACGAGAACGAATAATGTGTGGGCACGCGTG
GAGATGGTGTCAGATGCGCGCGCGCGGGATGGCGCAGAGACGGGGCGCGG
TGTAATGCGCGGCGGCATAGAATGAATCAGGTGAAAACGCTGGTGCTCAT
AGACGGCGGTGGAGATGTGATGAAGGTGCACTATGGCGGGCGGGGGTGAG
TCGGAGGAGAGAAACGCGAGGGGGAGGGGGCGCAAGGTGTCGTGCGCAAG
TGCGGAAAGCGCGGGCGTTGTCGGCCGCGTTGCTTGCGCAGCGATCGTTC
CACCGGCGCGGGCTTCGCGGCTGGCGGTCTCGGCGCGCGCGCCCTCAGCC
AAAAAACTACGCTCTCGTCCACGAACGACGCATGACAGCGCGGGCGGAAA
ACGGCGCACCGTCAGCGCGTTTTCCGCCGTCTCATGTGGCGCGCGCCTAT
TGGTGCGCGCTATCGACGCGCGCCGTGACACGTCTCCACGCCGCCGCGAT
GTTTTCCGCTGCGGATGGGCGCCAGCCTCTTGATGGAGCTACTCGGTCGG
CGCCGCTTCGCCGCGCACCCCTTCCCACCCTCAACGCGCGTTGTGTTCTC
CAACACGccgctgcccgcccacgcgtcgcccgccgctgcccgctcgcgcg
gccTGCACCCCTGGCACGGTTCGCGGTCCGCGCGCTATGGGCCCTCTCTC
CAGGCAGGcgccgaccaacgcgtcgccgtcgccgccactgtcgtcggctc
cgcccaagtgcgccacccccccgccgccCACCACCCTCATGCCGCGACTG
TGCGTGCACCTCGTCGTCGTGAATAACTCGGACCTGTCAGTTCTGGCGAG
TGTGACTTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2172827..2175438+

>Gvermi6760.t1 ID=Gvermi6760.t1|Name=Gvermi6760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=309bp|location=Sequence derived from alignment at ScGOVlb_88:2172827..2175438+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACTGCTTGCGCCTGCTGTTGCTAACTCCGCTTCGTGTTCTCCCCA
TCTCCACCTCTTGCTGCTGCCGTCTTCTCCACAGCAAACCGAAACCGTCG
CTTCCAAGACCATCACCCCCGTGCAGAGCAAAGCGCTCGTCAAGAATATG
CTGCGTGCCGCCTTCTCCTCCGTCGCCTACATTCGCAACTTGTTTGACAA
AAAGAACTTTGAGAAGACCAAAATCGGCACCACCGCCTTCTACAAGATCA
AGGACCAGTGCGCCGGAAACGTCGCGCGCTACAGGAATTCTGGCGAGTGT
GACTTGTGA
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