Gvermi6757.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6757.t1
Unique NameGvermi6757.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2166921..2167646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog215358.XP_010736366.1
Preferred nameGLTP
PFAMsGLTP
Max annot lvl33208|Metazoa
KEGG koko:K08051
GOsGO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006687,GO:0006807,GO:0006810,GO:0006869,GO:0008150,GO:0008152,GO:0008289,GO:0009987,GO:0010876,GO:0016020,GO:0016043,GO:0017089,GO:0033036,GO:0042802,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046836,GO:0051179,GO:0051234,GO:0051861,GO:0061024,GO:0071702,GO:0071704,GO:0071840,GO:0097367,GO:0120009,GO:0120013,GO:1901135,GO:1901264,GO:1901564,GO:1903509
Evalue2.39e-11
EggNOG OGsKOG3221@1|root,KOG3221@2759|Eukaryota,399V8@33154|Opisthokonta,3BERF@33208|Metazoa,3CV85@33213|Bilateria,486Q2@7711|Chordata,495MJ@7742|Vertebrata,49TZE@7898|Actinopterygii
DescriptionGlycolipid transfer protein b
COG categoryG
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6757Gvermi6757Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2166921..2167646 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6757.t1.start1Gvermi6757.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2166921..2166923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6757.t1.CDS1Gvermi6757.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2166921..2167646 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6757.t1.exon1Gvermi6757.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2166921..2167646 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6757.t1.stop1Gvermi6757.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2167644..2167646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6757.t1Gvermi6757.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2166921..2167646 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6757.t1 ID=Gvermi6757.t1|Name=Gvermi6757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=242bp
MNHTPVKQLTAVTSSTITVNTEAIHTPFSCITQPFYHAIHDADDKNLCFP
KGDINVELFNRAVSGFLTIFDALGCPIITEIVRRDFRGKTNGLRNSSRRL
RAQTLRELVRNEIKSPPRFWAASGIECLQWCQRILSFIEQLVQHLADDER
MELKEACIRAYRDTLALRHPNVTKAIFERALQLVPPRKQFVSNLCQSEQE
ANDEQVALCLVGMKDFLKAVRPHINALQTLFEIEDIDDMRR*
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spliced messenger RNA

>Gvermi6757.t1 ID=Gvermi6757.t1|Name=Gvermi6757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=726bp|location=Sequence derived from alignment at ScGOVlb_88:2166921..2167646+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCACACGCCAGTCAAGCAGCTCACGGCAGTCACGAGCAGCACTAT
CACTGTGAACACGGAAGCCATCCACACACCGTTTTCGTGCATCACTCAGC
CGTTCTACCACGCCATACACGATGCCGATGACAAGAACTTGTGTTTTCCG
AAGGGCGACATCAACGTGGAACTTTTCAATCGTGCCGTGTCCGGCTTTCT
CACCATCTTCGACGCCCTGGGTTGCCCCATCATCACGGAAATTGTGCGCA
GGGATTTCCGCGGAAAGACGAACGGGCTGAGGAACTCGTCGCGCCGCCTC
AGAGCGCAGACGCTTCGCGAGCTGGTGCGCAACGAAATCAAGTCGCCACC
GCGCTTTTGGGCCGCCTCCGGCATTGAGTGCCTGCAGTGGTGCCAGAGGA
TTCTTAGCTTTATCGAGCAGCTTGTACAACATCTTGCGGATGATGAGCGC
ATGGAACTGAAGGAGGCGTGCATTCGGGCGTACAGAGACACGCTGGCATT
GAGACACCCCAACGTGACCAAAGCCATTTTTGAAAGGGCGCTGCAGCTGG
TGCCGCCCAGAAAGCAATTTGTGTCGAACCTGTGCCAGAGCGAGCAGGAG
GCTAATGACGAGCAGGTGGCGCTGTGTCTGGTGGGCATGAAGGACTTTTT
GAAGGCTGTGCGGCCGCACATTAACGCGCTTCAGACGCTGTTCGAAATAG
AAGACATTGACGACATGCGTCGATGA
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protein sequence of Gvermi6757.t1

>Gvermi6757.t1 ID=Gvermi6757.t1|Name=Gvermi6757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=242bp
MNHTPVKQLTAVTSSTITVNTEAIHTPFSCITQPFYHAIHDADDKNLCFP
KGDINVELFNRAVSGFLTIFDALGCPIITEIVRRDFRGKTNGLRNSSRRL
RAQTLRELVRNEIKSPPRFWAASGIECLQWCQRILSFIEQLVQHLADDER
MELKEACIRAYRDTLALRHPNVTKAIFERALQLVPPRKQFVSNLCQSEQE
ANDEQVALCLVGMKDFLKAVRPHINALQTLFEIEDIDDMRR*
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mRNA from alignment at ScGOVlb_88:2166921..2167646+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6757.t1 ID=Gvermi6757.t1|Name=Gvermi6757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=726bp|location=Sequence derived from alignment at ScGOVlb_88:2166921..2167646+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCACACGCCAGTCAAGCAGCTCACGGCAGTCACGAGCAGCACTAT
CACTGTGAACACGGAAGCCATCCACACACCGTTTTCGTGCATCACTCAGC
CGTTCTACCACGCCATACACGATGCCGATGACAAGAACTTGTGTTTTCCG
AAGGGCGACATCAACGTGGAACTTTTCAATCGTGCCGTGTCCGGCTTTCT
CACCATCTTCGACGCCCTGGGTTGCCCCATCATCACGGAAATTGTGCGCA
GGGATTTCCGCGGAAAGACGAACGGGCTGAGGAACTCGTCGCGCCGCCTC
AGAGCGCAGACGCTTCGCGAGCTGGTGCGCAACGAAATCAAGTCGCCACC
GCGCTTTTGGGCCGCCTCCGGCATTGAGTGCCTGCAGTGGTGCCAGAGGA
TTCTTAGCTTTATCGAGCAGCTTGTACAACATCTTGCGGATGATGAGCGC
ATGGAACTGAAGGAGGCGTGCATTCGGGCGTACAGAGACACGCTGGCATT
GAGACACCCCAACGTGACCAAAGCCATTTTTGAAAGGGCGCTGCAGCTGG
TGCCGCCCAGAAAGCAATTTGTGTCGAACCTGTGCCAGAGCGAGCAGGAG
GCTAATGACGAGCAGGTGGCGCTGTGTCTGGTGGGCATGAAGGACTTTTT
GAAGGCTGTGCGGCCGCACATTAACGCGCTTCAGACGCTGTTCGAAATAG
AAGACATTGACGACATGCGTCGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2166921..2167646+

>Gvermi6757.t1 ID=Gvermi6757.t1|Name=Gvermi6757.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=726bp|location=Sequence derived from alignment at ScGOVlb_88:2166921..2167646+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCACACGCCAGTCAAGCAGCTCACGGCAGTCACGAGCAGCACTAT
CACTGTGAACACGGAAGCCATCCACACACCGTTTTCGTGCATCACTCAGC
CGTTCTACCACGCCATACACGATGCCGATGACAAGAACTTGTGTTTTCCG
AAGGGCGACATCAACGTGGAACTTTTCAATCGTGCCGTGTCCGGCTTTCT
CACCATCTTCGACGCCCTGGGTTGCCCCATCATCACGGAAATTGTGCGCA
GGGATTTCCGCGGAAAGACGAACGGGCTGAGGAACTCGTCGCGCCGCCTC
AGAGCGCAGACGCTTCGCGAGCTGGTGCGCAACGAAATCAAGTCGCCACC
GCGCTTTTGGGCCGCCTCCGGCATTGAGTGCCTGCAGTGGTGCCAGAGGA
TTCTTAGCTTTATCGAGCAGCTTGTACAACATCTTGCGGATGATGAGCGC
ATGGAACTGAAGGAGGCGTGCATTCGGGCGTACAGAGACACGCTGGCATT
GAGACACCCCAACGTGACCAAAGCCATTTTTGAAAGGGCGCTGCAGCTGG
TGCCGCCCAGAAAGCAATTTGTGTCGAACCTGTGCCAGAGCGAGCAGGAG
GCTAATGACGAGCAGGTGGCGCTGTGTCTGGTGGGCATGAAGGACTTTTT
GAAGGCTGTGCGGCCGCACATTAACGCGCTTCAGACGCTGTTCGAAATAG
AAGACATTGACGACATGCGTCGATGA
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