Gvermi6753.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6753.t1
Unique NameGvermi6753.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length534
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2158423..2160024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6753Gvermi6753Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2158423..2160024 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6753.t1.start1Gvermi6753.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2158423..2158425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6753.t1.CDS1Gvermi6753.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2158423..2160024 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6753.t1.exon1Gvermi6753.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2158423..2160024 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6753.t1.stop1Gvermi6753.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2160022..2160024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6753.t1Gvermi6753.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2158423..2160024 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6753.t1 ID=Gvermi6753.t1|Name=Gvermi6753.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=534bp
MAGPTSHRTAPPPPHPRKPLPSLPRHIWSRILSLLTTPTALATAAQTTYD
WHTEISSPHFDHVWRRVWDLQSKRSSESLLQTPWNLLSPWRRQVLASHHL
QSIAAPGAGPRSARLIFVPPRYQTDGTPSPEDRLAGVSSSFDVLDVFGRA
VVTHAFAESVLIAFEYAVALIRRPPPLRARSARKAAPSPRPSLHYDNSSP
VQGIFRFSPLKSKPSVLAITSCSVLCIDVHTARNRAALSHTVLETFLLQH
GLPTTVASSSDDKYALVGFDSGIIKVIEIEHPSRKNTLLLREGIDILVAN
EKYAVACSSMRPIALRVWNLSNGACLLSFTQASEGWESVDMIAALCPLTN
VNRFLLWHGGMYTKLSTLHISFGMLLPGIDVCSSSRSDGVPGEEENDSES
VQTGICKLALLADEKDVVLSTSHRAIVVSLSSHFGMGQKEFYGPRGALLA
LSTDDRVFVSADGNAFGRLGMQVSGRASLASSPKMQVWNIDDGELKSEIR
LPSTATSLSVCADIVAVVCGSVGKAVILFAGGL*
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spliced messenger RNA

>Gvermi6753.t1 ID=Gvermi6753.t1|Name=Gvermi6753.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at ScGOVlb_88:2158423..2160024+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGCCCAACATCGCATCGCACAGCTCCGCCTCCGCCCCACCCCCG
CAAGCCGCTGCCCTCACTGCCGCGGCACATCTGGTCCCGCATTCTTTCCC
TCCTCACCACCCCGACCGCGCTCGCCACCGCCGCGCAAACCACCTACGAC
TGGCACACAGAGATCTCCTCCCCCCACTTTGACCACGTATGGCGCCGCGT
CTGGGATCTACAGTCCAAGCGGTCTTCCGAATCCCTGCTCCAAACCCCGT
GGAACCTGCTCAGCCCCTGGCGGCGACAGGTTTTAGCCTCGCATCACCTG
CAGAGTATCGCCGCCCCAGGCGCCGGCCCCCGCAGCGCCCGCCTCATCTT
CGTCCCGCCGCGCTACCAGACCGACGGCACCCCGTCTCCGGAAGACCGTC
TGGCCGGCGTCTCGAGCAGCTTTGACGTGCTCGACGTCTTCGGACGCGCC
GTCGTCACCCACGCCTTTGCCGAGTCGGTGCTCATTGCCTTCGAGTACGC
CGTAGCTTTGATTCGCCGCCCACCGCCCCTACGCGCCCGCTCTGCACGCA
AAGCCGCCCCCTCGCCGCGCCCCTCCCTGCACTACGACAACTCCTCGCCC
GTGCAGGGCATCTTCCGCTTTTCTCCGCTAAAATCCAAGCCGTCCGTGCT
TGCCATCACTTCGTGCTCCGTGCTGTGCATCGACGTTCACACCGCCCGCA
ACCGCGCCGCGCTTTCGCACACTGTGCTGGAGACGTTTCTTTTGCAGCAT
GGCCTTCCCACCACTGTCGCCTCCTCGTCCGATGACAAGTACGCCTTGGT
TGGTTTTGACTCGGGCATCATCAAGGTCATTGAAATTGAGCACCCGTCTC
GGAAGAACACTCTTCTGCTGAGGGAGGGCATCGACATTCTGGTCGCCAAT
GAAAAATATGCCGTCGCATGCAGCTCCATGCGGCCAATCGCGCTTCGCGT
GTGGAACTTATCGAATGGCGCATGTCTTCTCAGTTTCACGCAAGCATCCG
AAGGCTGGGAGTCAGTCGATATGATCGCTGCCTTATGCCCTCTAACAAAC
GTCAATCGTTTTCTTCTTTGGCATGGCGGCATGTACACCAAACTCTCCAC
CCTTCACATTTCTTTCGGCATGTTATTGCCTGGCATTGATGTTTGTTCAA
GTTCTAGGTCTGACGGTGTGCCGGGTGAAGAGGAGAATGACTCTGAAAGT
GTTCAAACAGGAATTTGTAAACTTGCTTTATTGGCAGATGAAAAAGATGT
TGTCCTCTCGACATCCCATCGAGCAATTGTCGTCTCACTTTCCTCGCACT
TCGGAATGGGGCAGAAAGAATTTTATGGCCCCAGAGGAGCGCTTTTGGCT
TTGAGCACGGACGATAGAGTTTTTGTCTCTGCGGACGGAAATGCTTTTGG
GCGCTTGGGAATGCAGGTCAGTGGCAGAGCTTCACTTGCCTCCTCGCCAA
AGATGCAGGTTTGGAACATTGACGACGGAGAATTGAAAAGTGAAATTCGC
TTGCCGAGCACTGCTACATCACTTTCCGTCTGCGCTGATATCGTTGCTGT
GGTGTGCGGTAGCGTTGGAAAGGCTGTGATTCTTTTCGCTGGCGGACTGT
AA
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protein sequence of Gvermi6753.t1

>Gvermi6753.t1 ID=Gvermi6753.t1|Name=Gvermi6753.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=534bp
MAGPTSHRTAPPPPHPRKPLPSLPRHIWSRILSLLTTPTALATAAQTTYD
WHTEISSPHFDHVWRRVWDLQSKRSSESLLQTPWNLLSPWRRQVLASHHL
QSIAAPGAGPRSARLIFVPPRYQTDGTPSPEDRLAGVSSSFDVLDVFGRA
VVTHAFAESVLIAFEYAVALIRRPPPLRARSARKAAPSPRPSLHYDNSSP
VQGIFRFSPLKSKPSVLAITSCSVLCIDVHTARNRAALSHTVLETFLLQH
GLPTTVASSSDDKYALVGFDSGIIKVIEIEHPSRKNTLLLREGIDILVAN
EKYAVACSSMRPIALRVWNLSNGACLLSFTQASEGWESVDMIAALCPLTN
VNRFLLWHGGMYTKLSTLHISFGMLLPGIDVCSSSRSDGVPGEEENDSES
VQTGICKLALLADEKDVVLSTSHRAIVVSLSSHFGMGQKEFYGPRGALLA
LSTDDRVFVSADGNAFGRLGMQVSGRASLASSPKMQVWNIDDGELKSEIR
LPSTATSLSVCADIVAVVCGSVGKAVILFAGGL*
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mRNA from alignment at ScGOVlb_88:2158423..2160024+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6753.t1 ID=Gvermi6753.t1|Name=Gvermi6753.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at ScGOVlb_88:2158423..2160024+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGGCCCAACATCGCATCGCACAGCTCCGCCTCCGCCCCACCCCCG
CAAGCCGCTGCCCTCACTGCCGCGGCACATCTGGTCCCGCATTCTTTCCC
TCCTCACCACCCCGACCGCGCTCGCCACCGCCGCGCAAACCACCTACGAC
TGGCACACAGAGATCTCCTCCCCCCACTTTGACCACGTATGGCGCCGCGT
CTGGGATCTACAGTCCAAGCGGTCTTCCGAATCCCTGCTCCAAACCCCGT
GGAACCTGCTCAGCCCCTGGCGGCGACAGGTTTTAGCCTCGCATCACCTG
CAGAGTATCGCCGCCCCAGGCGCCGGCCCCCGCAGCGCCCGCCTCATCTT
CGTCCCGCCGCGCTACCAGACCGACGGCACCCCGTCTCCGGAAGACCGTC
TGGCCGGCGTCTCGAGCAGCTTTGACGTGCTCGACGTCTTCGGACGCGCC
GTCGTCACCCACGCCTTTGCCGAGTCGGTGCTCATTGCCTTCGAGTACGC
CGTAGCTTTGATTCGCCGCCCACCGCCCCTACGCGCCCGCTCTGCACGCA
AAGCCGCCCCCTCGCCGCGCCCCTCCCTGCACTACGACAACTCCTCGCCC
GTGCAGGGCATCTTCCGCTTTTCTCCGCTAAAATCCAAGCCGTCCGTGCT
TGCCATCACTTCGTGCTCCGTGCTGTGCATCGACGTTCACACCGCCCGCA
ACCGCGCCGCGCTTTCGCACACTGTGCTGGAGACGTTTCTTTTGCAGCAT
GGCCTTCCCACCACTGTCGCCTCCTCGTCCGATGACAAGTACGCCTTGGT
TGGTTTTGACTCGGGCATCATCAAGGTCATTGAAATTGAGCACCCGTCTC
GGAAGAACACTCTTCTGCTGAGGGAGGGCATCGACATTCTGGTCGCCAAT
GAAAAATATGCCGTCGCATGCAGCTCCATGCGGCCAATCGCGCTTCGCGT
GTGGAACTTATCGAATGGCGCATGTCTTCTCAGTTTCACGCAAGCATCCG
AAGGCTGGGAGTCAGTCGATATGATCGCTGCCTTATGCCCTCTAACAAAC
GTCAATCGTTTTCTTCTTTGGCATGGCGGCATGTACACCAAACTCTCCAC
CCTTCACATTTCTTTCGGCATGTTATTGCCTGGCATTGATGTTTGTTCAA
GTTCTAGGTCTGACGGTGTGCCGGGTGAAGAGGAGAATGACTCTGAAAGT
GTTCAAACAGGAATTTGTAAACTTGCTTTATTGGCAGATGAAAAAGATGT
TGTCCTCTCGACATCCCATCGAGCAATTGTCGTCTCACTTTCCTCGCACT
TCGGAATGGGGCAGAAAGAATTTTATGGCCCCAGAGGAGCGCTTTTGGCT
TTGAGCACGGACGATAGAGTTTTTGTCTCTGCGGACGGAAATGCTTTTGG
GCGCTTGGGAATGCAGGTCAGTGGCAGAGCTTCACTTGCCTCCTCGCCAA
AGATGCAGGTTTGGAACATTGACGACGGAGAATTGAAAAGTGAAATTCGC
TTGCCGAGCACTGCTACATCACTTTCCGTCTGCGCTGATATCGTTGCTGT
GGTGTGCGGTAGCGTTGGAAAGGCTGTGATTCTTTTCGCTGGCGGACTGT
AA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2158423..2160024+

>Gvermi6753.t1 ID=Gvermi6753.t1|Name=Gvermi6753.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1602bp|location=Sequence derived from alignment at ScGOVlb_88:2158423..2160024+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGGCCCAACATCGCATCGCACAGCTCCGCCTCCGCCCCACCCCCG
CAAGCCGCTGCCCTCACTGCCGCGGCACATCTGGTCCCGCATTCTTTCCC
TCCTCACCACCCCGACCGCGCTCGCCACCGCCGCGCAAACCACCTACGAC
TGGCACACAGAGATCTCCTCCCCCCACTTTGACCACGTATGGCGCCGCGT
CTGGGATCTACAGTCCAAGCGGTCTTCCGAATCCCTGCTCCAAACCCCGT
GGAACCTGCTCAGCCCCTGGCGGCGACAGGTTTTAGCCTCGCATCACCTG
CAGAGTATCGCCGCCCCAGGCGCCGGCCCCCGCAGCGCCCGCCTCATCTT
CGTCCCGCCGCGCTACCAGACCGACGGCACCCCGTCTCCGGAAGACCGTC
TGGCCGGCGTCTCGAGCAGCTTTGACGTGCTCGACGTCTTCGGACGCGCC
GTCGTCACCCACGCCTTTGCCGAGTCGGTGCTCATTGCCTTCGAGTACGC
CGTAGCTTTGATTCGCCGCCCACCGCCCCTACGCGCCCGCTCTGCACGCA
AAGCCGCCCCCTCGCCGCGCCCCTCCCTGCACTACGACAACTCCTCGCCC
GTGCAGGGCATCTTCCGCTTTTCTCCGCTAAAATCCAAGCCGTCCGTGCT
TGCCATCACTTCGTGCTCCGTGCTGTGCATCGACGTTCACACCGCCCGCA
ACCGCGCCGCGCTTTCGCACACTGTGCTGGAGACGTTTCTTTTGCAGCAT
GGCCTTCCCACCACTGTCGCCTCCTCGTCCGATGACAAGTACGCCTTGGT
TGGTTTTGACTCGGGCATCATCAAGGTCATTGAAATTGAGCACCCGTCTC
GGAAGAACACTCTTCTGCTGAGGGAGGGCATCGACATTCTGGTCGCCAAT
GAAAAATATGCCGTCGCATGCAGCTCCATGCGGCCAATCGCGCTTCGCGT
GTGGAACTTATCGAATGGCGCATGTCTTCTCAGTTTCACGCAAGCATCCG
AAGGCTGGGAGTCAGTCGATATGATCGCTGCCTTATGCCCTCTAACAAAC
GTCAATCGTTTTCTTCTTTGGCATGGCGGCATGTACACCAAACTCTCCAC
CCTTCACATTTCTTTCGGCATGTTATTGCCTGGCATTGATGTTTGTTCAA
GTTCTAGGTCTGACGGTGTGCCGGGTGAAGAGGAGAATGACTCTGAAAGT
GTTCAAACAGGAATTTGTAAACTTGCTTTATTGGCAGATGAAAAAGATGT
TGTCCTCTCGACATCCCATCGAGCAATTGTCGTCTCACTTTCCTCGCACT
TCGGAATGGGGCAGAAAGAATTTTATGGCCCCAGAGGAGCGCTTTTGGCT
TTGAGCACGGACGATAGAGTTTTTGTCTCTGCGGACGGAAATGCTTTTGG
GCGCTTGGGAATGCAGGTCAGTGGCAGAGCTTCACTTGCCTCCTCGCCAA
AGATGCAGGTTTGGAACATTGACGACGGAGAATTGAAAAGTGAAATTCGC
TTGCCGAGCACTGCTACATCACTTTCCGTCTGCGCTGATATCGTTGCTGT
GGTGTGCGGTAGCGTTGGAAAGGCTGTGATTCTTTTCGCTGGCGGACTGT
AA
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