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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 3988.XP_002527444.1 |
| PFAMs | DUF659,Dimer_Tnp_hAT |
| Max annot lvl | 35493|Streptophyta |
| Evalue | 2.77e-06 |
| EggNOG OGs | 2C7QK@1|root,2QZ11@2759|Eukaryota,37M6J@33090|Viridiplantae,3GH11@35493|Streptophyta,4JTPM@91835|fabids |
| Description | Protein of unknown function (DUF 659) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi6740.t1 ID=Gvermi6740.t1|Name=Gvermi6740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=889bp MQVAASPSAQSPSPPLPADSHQSPPKKLKRRGRPRSPVFTYFRRLVDHNG LFLGNQCSFCSFVSRDRSENPTYLTRHIIRTCDAPQHIKDALAARFANSH TVVHAVDAAPAAAASPQQQTTVVVSSHSLTLPDDAAKAQPLSFDSSQLNH PLPAAASASVAHALPTPHHQQLRPLGITKSRRGRPKSPALLHFRRHIDDK GLFIANQCIHCSFVSRDRSENSTLLLKHLLSPSCSAPDQVRQMLLASKAS SKSLRKRAVPLAVAPDYLAHATASSAGDAQHNRQALVLSVLRFLLANDLP LATADNPLFQHLMLTATGPAALSQAGTANAAAHADNALSSITSQQLECFL SNHSATELVDVFNDKPPSPHSSAQLIIYFTDASQEAACCNQARARGKEDV LFSAESAAYVASVFRFVSASHLSYLFSRNCRLNFSSSVADIVQHAQQQCD IKCAQVLISRPLVPDGKPRAIPNMRDNLPWVPDVVREVDILCQELLAQVP LLIRVLRRNVILAAYFKEDYSKTVADEVFRRDDEARKVLHRYLQFIVKPT LGIASLHVFEAVSHTFDLVCQAQNSHKDAKRLVDTRAFFTTLTEENCGNV PLSQEIIRLLLSSSYRTDLKAFLSVMKPLITLISMFNITRNMPLLRYSNP FFDTADLFRCPLEFRSRSLAHVLLDCARTMRELYSEKLPEHEDDLRLLRE HVACRLLGQGVDGCPPVADDITYIAALLDPNSDLPNTKGITVDEVWKRAV QYVQSRHSGGETGVKTVLDQLDAFHNRKGQFADDSLFSKCSEDMDPLEWW EKCGHVTPELQSLALATLSVPTTAFAAVRHITNLNASNEDLQRSVGDEEM EKRRFITWNLRLAVSRSKADVSEEVAEGNRLKTESVLL* back to topspliced messenger RNA >Gvermi6740.t1 ID=Gvermi6740.t1|Name=Gvermi6740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2667bp|location=Sequence derived from alignment at ScGOVlb_88:2130406..2133072+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGGTGGCCGCGTCCCCTTCCGCGCAGTCGCCGTCGCCGCCCCTCCC TGCCGACTCGCATCAATCCCCCCCCAAGAAGCTAAAGCGCCGCGGCAGGC CACGCTCTCCGGTCTTCACGTACTTCCGCCGCCTCGTCGATCACAACGGC CTTTTTCTCGGCAACCAATGCTCCTTTTGCAGCTTTGTCTCCAGGGACAG ATCTGAGAACCCCACCTACCTCACCAGACACATTATTCGCACCTGCGATG CCCCGCAGCATATCAAGGACGCCCTTGCCGCCAGATTTGCCAACTCCCAC ACCGTTGTCCATGCCGTCGATGCCGCGCCTGCCGCCGCTGCTTCTCCCCA ACAACAGACCACCGTTGTCGTCTCATCGCACTCCCTTACCCTTCCCGACG ATGCCGCCAAGGCCCAACCGCTCTCGTTCGATTCGTCACAGCTCAATCAC CCGCTGCCTGCCGCTGCGTCCGCCTCAGTCGCCCACGCCCTACCTACGCC CCACCACCAACAGCTGCGTCCGCTGGGCATCACCAAGTCGCGCCGCGGCC GTCCCAAGTCCCCCGCTCTGCTGCACTTTCGCCGACACATTGACGACAAG GGCCTCTTCATAGCCAACCAATGCATCCACTGCTCGTTTGTGTCACGCGA TCGCTCGGAGAACTCCACGCTCTTGTTGAAGCACCTGCTGTCTCCGTCGT GTTCCGCCCCGGACCAAGTTCGCCAAATGCTGCTGGCGAGCAAGGCTTCG TCCAAATCGCTTCGGAAAAGGGCCGTGCCACTTGCTGTTGCGCCCGACTA TCTTGCCCACGCCACGGCGTCGTCTGCCGGTGATGCCCAACACAATCGTC AAGCGCTGGTTCTTTCTGTGCTTCGATTCCTGCTGGCAAATGATCTCCCG CTTGCCACGGCTGACAACCCGCTTTTTCAGCATTTGATGCTCACCGCAAC AGGCCCCGCCGCTTTGTCGCAAGCTGGAACGGCCAACGCTGCAGCGCATG CGGACAACGCGCTCTCTTCCATTACCTCTCAGCAACTCGAGTGCTTTCTG TCCAACCATTCCGCCACTGAACTTGTCGACGTGTTCAACGATAAGCCACC TTCGCCGCATTCGTCAGCTCAGCTTATTATTTACTTCACCGACGCTTCTC AAGAAGCTGCATGTTGCAACCAGGCGCGTGCGCGCGGTAAAGAGGATGTG CTGTTCTCGGCGGAATCTGCCGCGTATGTTGCCTCGGTCTTTCGGTTCGT GTCAGCTTCGCACCTCTCTTATCTTTTTTCCAGGAATTGTCGTTTGAACT TTTCATCCAGCGTCGCCGACATTGTGCAGCATGCCCAACAGCAGTGCGAC ATCAAGTGTGCGCAGGTTCTCATCAGCAGGCCGCTTGTTCCCGATGGCAA ACCACGCGCGATTCCGAACATGAGGGATAACCTGCCCTGGGTCCCTGACG TCGTTAGAGAAGTTGACATACTTTGTCAGGAACTTCTGGCGCAGGTTCCG CTTCTTATCCGCGTCCTGAGACGGAATGTCATTCTCGCTGCTTACTTTAA AGAGGACTACAGTAAGACCGTTGCTGATGAAGTGTTTAGGCGAGACGACG AGGCAAGGAAAGTATTGCATCGCTACCTACAGTTTATCGTCAAACCAACG CTCGGAATTGCTTCTCTGCATGTCTTTGAGGCTGTTTCGCACACGTTCGA CCTTGTTTGTCAGGCGCAGAACAGTCACAAAGATGCGAAACGATTGGTGG ACACTCGCGCGTTTTTCACAACATTGACGGAGGAAAATTGTGGAAACGTA CCACTGAGCCAGGAAATCATTCGTTTGCTACTTTCTAGTTCCTATCGCAC AGACCTTAAGGCGTTCTTATCCGTCATGAAGCCATTGATTACTCTCATAT CCATGTTCAACATCACCCGCAACATGCCTCTTCTAAGATATTCTAATCCC TTTTTTGATACCGCGGACTTGTTTCGATGCCCGCTGGAGTTTCGGTCAAG GTCTCTGGCACACGTTCTATTGGATTGTGCGCGAACGATGCGGGAGCTCT ATTCGGAAAAGTTGCCAGAGCACGAGGACGATTTGCGTCTACTTCGCGAG CATGTGGCTTGTCGTTTATTGGGGCAAGGTGTGGATGGATGCCCTCCTGT TGCAGATGATATCACTTACATCGCTGCGCTTTTGGACCCGAATAGCGACT TGCCAAATACGAAGGGCATAACGGTCGATGAGGTATGGAAGCGAGCTGTG CAATACGTGCAATCGCGTCATTCAGGTGGCGAGACGGGCGTCAAGACAGT CTTGGACCAATTAGACGCGTTCCATAATCGAAAGGGGCAGTTTGCCGATG ACAGCTTGTTCAGCAAGTGTAGTGAAGATATGGACCCTTTGGAATGGTGG GAGAAGTGCGGACATGTTACACCTGAATTACAGTCGCTTGCTCTTGCCAC TCTCAGCGTGCCTACAACCGCCTTCGCGGCTGTGAGACACATAACCAACC TCAATGCCTCCAACGAGGATTTGCAGCGATCCGTGGGGGACGAGGAAATG GAAAAGAGAAGGTTCATCACATGGAACCTGAGGTTGGCCGTGAGCCGATC GAAGGCTGATGTCAGTGAGGAGGTTGCCGAAGGCAACCGTCTCAAGACAG AGTCGGTGTTGTTGTAG back to topprotein sequence of Gvermi6740.t1 >Gvermi6740.t1 ID=Gvermi6740.t1|Name=Gvermi6740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=889bp
MQVAASPSAQSPSPPLPADSHQSPPKKLKRRGRPRSPVFTYFRRLVDHNG LFLGNQCSFCSFVSRDRSENPTYLTRHIIRTCDAPQHIKDALAARFANSH TVVHAVDAAPAAAASPQQQTTVVVSSHSLTLPDDAAKAQPLSFDSSQLNH PLPAAASASVAHALPTPHHQQLRPLGITKSRRGRPKSPALLHFRRHIDDK GLFIANQCIHCSFVSRDRSENSTLLLKHLLSPSCSAPDQVRQMLLASKAS SKSLRKRAVPLAVAPDYLAHATASSAGDAQHNRQALVLSVLRFLLANDLP LATADNPLFQHLMLTATGPAALSQAGTANAAAHADNALSSITSQQLECFL SNHSATELVDVFNDKPPSPHSSAQLIIYFTDASQEAACCNQARARGKEDV LFSAESAAYVASVFRFVSASHLSYLFSRNCRLNFSSSVADIVQHAQQQCD IKCAQVLISRPLVPDGKPRAIPNMRDNLPWVPDVVREVDILCQELLAQVP LLIRVLRRNVILAAYFKEDYSKTVADEVFRRDDEARKVLHRYLQFIVKPT LGIASLHVFEAVSHTFDLVCQAQNSHKDAKRLVDTRAFFTTLTEENCGNV PLSQEIIRLLLSSSYRTDLKAFLSVMKPLITLISMFNITRNMPLLRYSNP FFDTADLFRCPLEFRSRSLAHVLLDCARTMRELYSEKLPEHEDDLRLLRE HVACRLLGQGVDGCPPVADDITYIAALLDPNSDLPNTKGITVDEVWKRAV QYVQSRHSGGETGVKTVLDQLDAFHNRKGQFADDSLFSKCSEDMDPLEWW EKCGHVTPELQSLALATLSVPTTAFAAVRHITNLNASNEDLQRSVGDEEM EKRRFITWNLRLAVSRSKADVSEEVAEGNRLKTESVLL* back to topmRNA from alignment at ScGOVlb_88:2130406..2133072+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi6740.t1 ID=Gvermi6740.t1|Name=Gvermi6740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2667bp|location=Sequence derived from alignment at ScGOVlb_88:2130406..2133072+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCAGGTGGCCGCGTCCCCTTCCGCGCAGTCGCCGTCGCCGCCCCTCCC
TGCCGACTCGCATCAATCCCCCCCCAAGAAGCTAAAGCGCCGCGGCAGGC
CACGCTCTCCGGTCTTCACGTACTTCCGCCGCCTCGTCGATCACAACGGC
CTTTTTCTCGGCAACCAATGCTCCTTTTGCAGCTTTGTCTCCAGGGACAG
ATCTGAGAACCCCACCTACCTCACCAGACACATTATTCGCACCTGCGATG
CCCCGCAGCATATCAAGGACGCCCTTGCCGCCAGATTTGCCAACTCCCAC
ACCGTTGTCCATGCCGTCGATGCCGCGCCTGCCGCCGCTGCTTCTCCCCA
ACAACAGACCACCGTTGTCGTCTCATCGCACTCCCTTACCCTTCCCGACG
ATGCCGCCAAGGCCCAACCGCTCTCGTTCGATTCGTCACAGCTCAATCAC
CCGCTGCCTGCCGCTGCGTCCGCCTCAGTCGCCCACGCCCTACCTACGCC
CCACCACCAACAGCTGCGTCCGCTGGGCATCACCAAGTCGCGCCGCGGCC
GTCCCAAGTCCCCCGCTCTGCTGCACTTTCGCCGACACATTGACGACAAG
GGCCTCTTCATAGCCAACCAATGCATCCACTGCTCGTTTGTGTCACGCGA
TCGCTCGGAGAACTCCACGCTCTTGTTGAAGCACCTGCTGTCTCCGTCGT
GTTCCGCCCCGGACCAAGTTCGCCAAATGCTGCTGGCGAGCAAGGCTTCG
TCCAAATCGCTTCGGAAAAGGGCCGTGCCACTTGCTGTTGCGCCCGACTA
TCTTGCCCACGCCACGGCGTCGTCTGCCGGTGATGCCCAACACAATCGTC
AAGCGCTGGTTCTTTCTGTGCTTCGATTCCTGCTGGCAAATGATCTCCCG
CTTGCCACGGCTGACAACCCGCTTTTTCAGCATTTGATGCTCACCGCAAC
AGGCCCCGCCGCTTTGTCGCAAGCTGGAACGGCCAACGCTGCAGCGCATG
CGGACAACGCGCTCTCTTCCATTACCTCTCAGCAACTCGAGTGCTTTCTG
TCCAACCATTCCGCCACTGAACTTGTCGACGTGTTCAACGATAAGCCACC
TTCGCCGCATTCGTCAGCTCAGCTTATTATTTACTTCACCGACGCTTCTC
AAGAAGCTGCATGTTGCAACCAGGCGCGTGCGCGCGGTAAAGAGGATGTG
CTGTTCTCGGCGGAATCTGCCGCGTATGTTGCCTCGGTCTTTCGGTTCGT
GTCAGCTTCGCACCTCTCTTATCTTTTTTCCAGGAATTGTCGTTTGAACT
TTTCATCCAGCGTCGCCGACATTGTGCAGCATGCCCAACAGCAGTGCGAC
ATCAAGTGTGCGCAGGTTCTCATCAGCAGGCCGCTTGTTCCCGATGGCAA
ACCACGCGCGATTCCGAACATGAGGGATAACCTGCCCTGGGTCCCTGACG
TCGTTAGAGAAGTTGACATACTTTGTCAGGAACTTCTGGCGCAGGTTCCG
CTTCTTATCCGCGTCCTGAGACGGAATGTCATTCTCGCTGCTTACTTTAA
AGAGGACTACAGTAAGACCGTTGCTGATGAAGTGTTTAGGCGAGACGACG
AGGCAAGGAAAGTATTGCATCGCTACCTACAGTTTATCGTCAAACCAACG
CTCGGAATTGCTTCTCTGCATGTCTTTGAGGCTGTTTCGCACACGTTCGA
CCTTGTTTGTCAGGCGCAGAACAGTCACAAAGATGCGAAACGATTGGTGG
ACACTCGCGCGTTTTTCACAACATTGACGGAGGAAAATTGTGGAAACGTA
CCACTGAGCCAGGAAATCATTCGTTTGCTACTTTCTAGTTCCTATCGCAC
AGACCTTAAGGCGTTCTTATCCGTCATGAAGCCATTGATTACTCTCATAT
CCATGTTCAACATCACCCGCAACATGCCTCTTCTAAGATATTCTAATCCC
TTTTTTGATACCGCGGACTTGTTTCGATGCCCGCTGGAGTTTCGGTCAAG
GTCTCTGGCACACGTTCTATTGGATTGTGCGCGAACGATGCGGGAGCTCT
ATTCGGAAAAGTTGCCAGAGCACGAGGACGATTTGCGTCTACTTCGCGAG
CATGTGGCTTGTCGTTTATTGGGGCAAGGTGTGGATGGATGCCCTCCTGT
TGCAGATGATATCACTTACATCGCTGCGCTTTTGGACCCGAATAGCGACT
TGCCAAATACGAAGGGCATAACGGTCGATGAGGTATGGAAGCGAGCTGTG
CAATACGTGCAATCGCGTCATTCAGGTGGCGAGACGGGCGTCAAGACAGT
CTTGGACCAATTAGACGCGTTCCATAATCGAAAGGGGCAGTTTGCCGATG
ACAGCTTGTTCAGCAAGTGTAGTGAAGATATGGACCCTTTGGAATGGTGG
GAGAAGTGCGGACATGTTACACCTGAATTACAGTCGCTTGCTCTTGCCAC
TCTCAGCGTGCCTACAACCGCCTTCGCGGCTGTGAGACACATAACCAACC
TCAATGCCTCCAACGAGGATTTGCAGCGATCCGTGGGGGACGAGGAAATG
GAAAAGAGAAGGTTCATCACATGGAACCTGAGGTTGGCCGTGAGCCGATC
GAAGGCTGATGTCAGTGAGGAGGTTGCCGAAGGCAACCGTCTCAAGACAG
AGTCGGTGTTGTTGTAG back to topCoding sequence (CDS) from alignment at ScGOVlb_88:2130406..2133072+ >Gvermi6740.t1 ID=Gvermi6740.t1|Name=Gvermi6740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2667bp|location=Sequence derived from alignment at ScGOVlb_88:2130406..2133072+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCAGGTGGCCGCGTCCCCTTCCGCGCAGTCGCCGTCGCCGCCCCTCCC TGCCGACTCGCATCAATCCCCCCCCAAGAAGCTAAAGCGCCGCGGCAGGC CACGCTCTCCGGTCTTCACGTACTTCCGCCGCCTCGTCGATCACAACGGC CTTTTTCTCGGCAACCAATGCTCCTTTTGCAGCTTTGTCTCCAGGGACAG ATCTGAGAACCCCACCTACCTCACCAGACACATTATTCGCACCTGCGATG CCCCGCAGCATATCAAGGACGCCCTTGCCGCCAGATTTGCCAACTCCCAC ACCGTTGTCCATGCCGTCGATGCCGCGCCTGCCGCCGCTGCTTCTCCCCA ACAACAGACCACCGTTGTCGTCTCATCGCACTCCCTTACCCTTCCCGACG ATGCCGCCAAGGCCCAACCGCTCTCGTTCGATTCGTCACAGCTCAATCAC CCGCTGCCTGCCGCTGCGTCCGCCTCAGTCGCCCACGCCCTACCTACGCC CCACCACCAACAGCTGCGTCCGCTGGGCATCACCAAGTCGCGCCGCGGCC GTCCCAAGTCCCCCGCTCTGCTGCACTTTCGCCGACACATTGACGACAAG GGCCTCTTCATAGCCAACCAATGCATCCACTGCTCGTTTGTGTCACGCGA TCGCTCGGAGAACTCCACGCTCTTGTTGAAGCACCTGCTGTCTCCGTCGT GTTCCGCCCCGGACCAAGTTCGCCAAATGCTGCTGGCGAGCAAGGCTTCG TCCAAATCGCTTCGGAAAAGGGCCGTGCCACTTGCTGTTGCGCCCGACTA TCTTGCCCACGCCACGGCGTCGTCTGCCGGTGATGCCCAACACAATCGTC AAGCGCTGGTTCTTTCTGTGCTTCGATTCCTGCTGGCAAATGATCTCCCG CTTGCCACGGCTGACAACCCGCTTTTTCAGCATTTGATGCTCACCGCAAC AGGCCCCGCCGCTTTGTCGCAAGCTGGAACGGCCAACGCTGCAGCGCATG CGGACAACGCGCTCTCTTCCATTACCTCTCAGCAACTCGAGTGCTTTCTG TCCAACCATTCCGCCACTGAACTTGTCGACGTGTTCAACGATAAGCCACC TTCGCCGCATTCGTCAGCTCAGCTTATTATTTACTTCACCGACGCTTCTC AAGAAGCTGCATGTTGCAACCAGGCGCGTGCGCGCGGTAAAGAGGATGTG CTGTTCTCGGCGGAATCTGCCGCGTATGTTGCCTCGGTCTTTCGGTTCGT GTCAGCTTCGCACCTCTCTTATCTTTTTTCCAGGAATTGTCGTTTGAACT TTTCATCCAGCGTCGCCGACATTGTGCAGCATGCCCAACAGCAGTGCGAC ATCAAGTGTGCGCAGGTTCTCATCAGCAGGCCGCTTGTTCCCGATGGCAA ACCACGCGCGATTCCGAACATGAGGGATAACCTGCCCTGGGTCCCTGACG TCGTTAGAGAAGTTGACATACTTTGTCAGGAACTTCTGGCGCAGGTTCCG CTTCTTATCCGCGTCCTGAGACGGAATGTCATTCTCGCTGCTTACTTTAA AGAGGACTACAGTAAGACCGTTGCTGATGAAGTGTTTAGGCGAGACGACG AGGCAAGGAAAGTATTGCATCGCTACCTACAGTTTATCGTCAAACCAACG CTCGGAATTGCTTCTCTGCATGTCTTTGAGGCTGTTTCGCACACGTTCGA CCTTGTTTGTCAGGCGCAGAACAGTCACAAAGATGCGAAACGATTGGTGG ACACTCGCGCGTTTTTCACAACATTGACGGAGGAAAATTGTGGAAACGTA CCACTGAGCCAGGAAATCATTCGTTTGCTACTTTCTAGTTCCTATCGCAC AGACCTTAAGGCGTTCTTATCCGTCATGAAGCCATTGATTACTCTCATAT CCATGTTCAACATCACCCGCAACATGCCTCTTCTAAGATATTCTAATCCC TTTTTTGATACCGCGGACTTGTTTCGATGCCCGCTGGAGTTTCGGTCAAG GTCTCTGGCACACGTTCTATTGGATTGTGCGCGAACGATGCGGGAGCTCT ATTCGGAAAAGTTGCCAGAGCACGAGGACGATTTGCGTCTACTTCGCGAG CATGTGGCTTGTCGTTTATTGGGGCAAGGTGTGGATGGATGCCCTCCTGT TGCAGATGATATCACTTACATCGCTGCGCTTTTGGACCCGAATAGCGACT TGCCAAATACGAAGGGCATAACGGTCGATGAGGTATGGAAGCGAGCTGTG CAATACGTGCAATCGCGTCATTCAGGTGGCGAGACGGGCGTCAAGACAGT CTTGGACCAATTAGACGCGTTCCATAATCGAAAGGGGCAGTTTGCCGATG ACAGCTTGTTCAGCAAGTGTAGTGAAGATATGGACCCTTTGGAATGGTGG GAGAAGTGCGGACATGTTACACCTGAATTACAGTCGCTTGCTCTTGCCAC TCTCAGCGTGCCTACAACCGCCTTCGCGGCTGTGAGACACATAACCAACC TCAATGCCTCCAACGAGGATTTGCAGCGATCCGTGGGGGACGAGGAAATG GAAAAGAGAAGGTTCATCACATGGAACCTGAGGTTGGCCGTGAGCCGATC GAAGGCTGATGTCAGTGAGGAGGTTGCCGAAGGCAACCGTCTCAAGACAG AGTCGGTGTTGTTGTAG back to top
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