Gvermi6739.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6739.t1
Unique NameGvermi6739.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length622
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2127572..2129437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6739Gvermi6739Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2127572..2129437 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6739.t1.stop1Gvermi6739.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2127572..2127574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6739.t1.CDS1Gvermi6739.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2127572..2129437 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6739.t1.exon1Gvermi6739.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2127572..2129437 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6739.t1.start1Gvermi6739.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2129435..2129437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6739.t1Gvermi6739.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2127572..2129437 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6739.t1 ID=Gvermi6739.t1|Name=Gvermi6739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=622bp
MGLSAVSLRRSNARPPKSRQRPSIFRFCSSKSAVTPSSLRRYRDLPAIDL
LDNLARLSAPAVTDDLADLVNHIASNKTLLHNVVAAALSPPLQSPSAPRE
RLPRTWVLSILIRHGPPTLREAIVKDASLITAFADVFRAPPTKLDAALAA
HAADILRDLLHHFPKQTASALYRTKLVPHLVQHASLQPAADLLPRFVGTR
IFTSGYSPILATHKRAIHMMATSRVHHLLLARFEHSLHVLLGNKQGSQTY
AVACVEGVCNAMAAISMRALCIPRKHEDSDERTDIQYSAGLGLITASVYN
DCKDYLNLLRCPEPVKKLVSMAFEPAAHEHPDVFYPTMTLLCSLLRAMRK
KKNSLFPSMRKAVSEVDTGIITGVLLDTVPVLAQKLNADGAVIVGRARLA
IVDLVREACVTINEKSLCRLLSANDYALPRAMLALAGAFTRNEVVLTRVS
QALGAVFSRHKQLGMQLLQHTDVFGFMVRLRELPPTWCLLRSFVCSVCFE
EAMQQSKHDSSRHDTLLELEEFYDEHIKAMEEIGLEKASDLKQSKLSRDS
VDFDVDALYGQSEDYGVEVYIRGLLQEVSGENGNTPPSDNVVQHAAEAVH
NVAGAFAEKLSRGLHYLQDDE*
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spliced messenger RNA

>Gvermi6739.t1 ID=Gvermi6739.t1|Name=Gvermi6739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at ScGOVlb_88:2127572..2129437- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTATCGGCCGTCTCTCTTCGTCGGAGCAACGCGCGTCCCCCCAA
GTCCCGCCAACGCCCCTCCATCTTCCGCTTTTGCTCTTCCAAGTCCGCCG
TCACCCCCTCAAGTCTCCGCCGCTATCGTGACCTTCCCGCCATAGATTTG
CTCGACAACCTCGCCAGGCTCTCCGCCCCCGCCGTCACAGACGACCTTGC
CGACCTGGTGAACCACATTGCCTCCAACAAGACGCTACTGCATAACGTCG
TTGCCGCCGCGCTCTCGCCGCCACTGCAGTCGCCTAGCGCGCCTCGCGAG
CGCCTGCCGCGCACTTGGGTGCTGTCCATTCTCATCCGCCACGGCCCACC
AACGCTGCGGGAAGCCATCGTCAAAGACGCCTCGCTCATCACCGCCTTTG
CTGACGTGTTCCGCGCCCCGCCCACCAAGCTCGATGCCGCCTTGGCCGCC
CACGCCGCCGACATTCTGCGCGACCTTTTGCACCACTTTCCAAAGCAAAC
CGCCTCGGCCTTGTACCGCACCAAACTGGTGCCGCATCTGGTGCAACATG
CTAGTCTGCAACCCGCCGCCGATTTACTCCCTCGCTTTGTGGGTACCCGG
ATTTTCACCTCGGGCTACTCTCCCATACTTGCCACGCACAAGCGTGCCAT
TCACATGATGGCCACATCACGCGTGCACCACCTGTTGTTGGCTCGCTTCG
AGCACTCGCTGCACGTGTTGCTGGGCAACAAGCAAGGCAGTCAGACTTAT
GCAGTCGCCTGTGTGGAAGGCGTGTGCAACGCCATGGCCGCCATTTCAAT
GCGCGCATTGTGCATACCCAGAAAACACGAGGATTCGGATGAACGCACCG
ACATTCAATATTCTGCCGGGCTCGGTCTAATCACCGCCTCTGTGTACAAC
GATTGTAAGGACTATCTCAACCTGCTGCGCTGTCCGGAGCCGGTCAAGAA
GCTGGTGAGCATGGCGTTTGAGCCGGCTGCCCACGAGCACCCCGACGTGT
TTTACCCAACCATGACGCTGTTGTGCTCGCTTTTGCGAGCGATGAGAAAG
AAGAAAAACTCTCTGTTCCCTTCCATGCGAAAGGCCGTGTCTGAGGTAGA
TACCGGCATAATCACCGGTGTGCTCCTCGATACAGTGCCGGTGTTGGCAC
AGAAGCTAAACGCTGACGGCGCTGTCATTGTTGGACGTGCGCGGCTGGCA
ATCGTGGATCTGGTACGAGAAGCATGTGTGACGATCAACGAGAAATCACT
TTGCAGGCTGCTAAGCGCCAACGACTACGCGCTACCGCGCGCCATGCTCG
CGCTGGCAGGCGCTTTCACCCGCAACGAAGTGGTGCTGACACGGGTGTCG
CAGGCGCTTGGGGCGGTGTTCTCGCGCCACAAGCAGCTCGGCATGCAGCT
GCTGCAGCACACGGACGTGTTTGGGTTCATGGTGCGGCTGAGGGAGTTGC
CGCCGACGTGGTGTTTGCTGCGCAGTTTTGTGTGCAGCGTTTGCTTTGAG
GAAGCCATGCAGCAGAGCAAGCACGACAGCAGCCGGCACGACACGCTGCT
GGAGCTGGAGGAGTTCTACGACGAGCACATCAAGGCCATGGAGGAAATCG
GCCTCGAGAAGGCGTCTGACCTAAAGCAGAGCAAACTCAGCCGCGACAGC
GTGGACTTTGACGTGGATGCTCTATACGGCCAGAGCGAAGACTACGGCGT
CGAGGTGTACATCCGTGGGCTGCTGCAGGAGGTTTCCGGCGAGAATGGGA
ACACGCCGCCGTCGGACAACGTGGTGCAGCATGCTGCGGAAGCGGTGCAT
AACGTCGCCGGAGCTTTTGCTGAGAAGCTCAGTAGAGGGTTACACTACCT
TCAAGATGATGAGTGA
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protein sequence of Gvermi6739.t1

>Gvermi6739.t1 ID=Gvermi6739.t1|Name=Gvermi6739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=622bp
MGLSAVSLRRSNARPPKSRQRPSIFRFCSSKSAVTPSSLRRYRDLPAIDL
LDNLARLSAPAVTDDLADLVNHIASNKTLLHNVVAAALSPPLQSPSAPRE
RLPRTWVLSILIRHGPPTLREAIVKDASLITAFADVFRAPPTKLDAALAA
HAADILRDLLHHFPKQTASALYRTKLVPHLVQHASLQPAADLLPRFVGTR
IFTSGYSPILATHKRAIHMMATSRVHHLLLARFEHSLHVLLGNKQGSQTY
AVACVEGVCNAMAAISMRALCIPRKHEDSDERTDIQYSAGLGLITASVYN
DCKDYLNLLRCPEPVKKLVSMAFEPAAHEHPDVFYPTMTLLCSLLRAMRK
KKNSLFPSMRKAVSEVDTGIITGVLLDTVPVLAQKLNADGAVIVGRARLA
IVDLVREACVTINEKSLCRLLSANDYALPRAMLALAGAFTRNEVVLTRVS
QALGAVFSRHKQLGMQLLQHTDVFGFMVRLRELPPTWCLLRSFVCSVCFE
EAMQQSKHDSSRHDTLLELEEFYDEHIKAMEEIGLEKASDLKQSKLSRDS
VDFDVDALYGQSEDYGVEVYIRGLLQEVSGENGNTPPSDNVVQHAAEAVH
NVAGAFAEKLSRGLHYLQDDE*
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mRNA from alignment at ScGOVlb_88:2127572..2129437-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6739.t1 ID=Gvermi6739.t1|Name=Gvermi6739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at ScGOVlb_88:2127572..2129437- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCTATCGGCCGTCTCTCTTCGTCGGAGCAACGCGCGTCCCCCCAA
GTCCCGCCAACGCCCCTCCATCTTCCGCTTTTGCTCTTCCAAGTCCGCCG
TCACCCCCTCAAGTCTCCGCCGCTATCGTGACCTTCCCGCCATAGATTTG
CTCGACAACCTCGCCAGGCTCTCCGCCCCCGCCGTCACAGACGACCTTGC
CGACCTGGTGAACCACATTGCCTCCAACAAGACGCTACTGCATAACGTCG
TTGCCGCCGCGCTCTCGCCGCCACTGCAGTCGCCTAGCGCGCCTCGCGAG
CGCCTGCCGCGCACTTGGGTGCTGTCCATTCTCATCCGCCACGGCCCACC
AACGCTGCGGGAAGCCATCGTCAAAGACGCCTCGCTCATCACCGCCTTTG
CTGACGTGTTCCGCGCCCCGCCCACCAAGCTCGATGCCGCCTTGGCCGCC
CACGCCGCCGACATTCTGCGCGACCTTTTGCACCACTTTCCAAAGCAAAC
CGCCTCGGCCTTGTACCGCACCAAACTGGTGCCGCATCTGGTGCAACATG
CTAGTCTGCAACCCGCCGCCGATTTACTCCCTCGCTTTGTGGGTACCCGG
ATTTTCACCTCGGGCTACTCTCCCATACTTGCCACGCACAAGCGTGCCAT
TCACATGATGGCCACATCACGCGTGCACCACCTGTTGTTGGCTCGCTTCG
AGCACTCGCTGCACGTGTTGCTGGGCAACAAGCAAGGCAGTCAGACTTAT
GCAGTCGCCTGTGTGGAAGGCGTGTGCAACGCCATGGCCGCCATTTCAAT
GCGCGCATTGTGCATACCCAGAAAACACGAGGATTCGGATGAACGCACCG
ACATTCAATATTCTGCCGGGCTCGGTCTAATCACCGCCTCTGTGTACAAC
GATTGTAAGGACTATCTCAACCTGCTGCGCTGTCCGGAGCCGGTCAAGAA
GCTGGTGAGCATGGCGTTTGAGCCGGCTGCCCACGAGCACCCCGACGTGT
TTTACCCAACCATGACGCTGTTGTGCTCGCTTTTGCGAGCGATGAGAAAG
AAGAAAAACTCTCTGTTCCCTTCCATGCGAAAGGCCGTGTCTGAGGTAGA
TACCGGCATAATCACCGGTGTGCTCCTCGATACAGTGCCGGTGTTGGCAC
AGAAGCTAAACGCTGACGGCGCTGTCATTGTTGGACGTGCGCGGCTGGCA
ATCGTGGATCTGGTACGAGAAGCATGTGTGACGATCAACGAGAAATCACT
TTGCAGGCTGCTAAGCGCCAACGACTACGCGCTACCGCGCGCCATGCTCG
CGCTGGCAGGCGCTTTCACCCGCAACGAAGTGGTGCTGACACGGGTGTCG
CAGGCGCTTGGGGCGGTGTTCTCGCGCCACAAGCAGCTCGGCATGCAGCT
GCTGCAGCACACGGACGTGTTTGGGTTCATGGTGCGGCTGAGGGAGTTGC
CGCCGACGTGGTGTTTGCTGCGCAGTTTTGTGTGCAGCGTTTGCTTTGAG
GAAGCCATGCAGCAGAGCAAGCACGACAGCAGCCGGCACGACACGCTGCT
GGAGCTGGAGGAGTTCTACGACGAGCACATCAAGGCCATGGAGGAAATCG
GCCTCGAGAAGGCGTCTGACCTAAAGCAGAGCAAACTCAGCCGCGACAGC
GTGGACTTTGACGTGGATGCTCTATACGGCCAGAGCGAAGACTACGGCGT
CGAGGTGTACATCCGTGGGCTGCTGCAGGAGGTTTCCGGCGAGAATGGGA
ACACGCCGCCGTCGGACAACGTGGTGCAGCATGCTGCGGAAGCGGTGCAT
AACGTCGCCGGAGCTTTTGCTGAGAAGCTCAGTAGAGGGTTACACTACCT
TCAAGATGATGAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2127572..2129437-

>Gvermi6739.t1 ID=Gvermi6739.t1|Name=Gvermi6739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1866bp|location=Sequence derived from alignment at ScGOVlb_88:2127572..2129437- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCTATCGGCCGTCTCTCTTCGTCGGAGCAACGCGCGTCCCCCCAA
GTCCCGCCAACGCCCCTCCATCTTCCGCTTTTGCTCTTCCAAGTCCGCCG
TCACCCCCTCAAGTCTCCGCCGCTATCGTGACCTTCCCGCCATAGATTTG
CTCGACAACCTCGCCAGGCTCTCCGCCCCCGCCGTCACAGACGACCTTGC
CGACCTGGTGAACCACATTGCCTCCAACAAGACGCTACTGCATAACGTCG
TTGCCGCCGCGCTCTCGCCGCCACTGCAGTCGCCTAGCGCGCCTCGCGAG
CGCCTGCCGCGCACTTGGGTGCTGTCCATTCTCATCCGCCACGGCCCACC
AACGCTGCGGGAAGCCATCGTCAAAGACGCCTCGCTCATCACCGCCTTTG
CTGACGTGTTCCGCGCCCCGCCCACCAAGCTCGATGCCGCCTTGGCCGCC
CACGCCGCCGACATTCTGCGCGACCTTTTGCACCACTTTCCAAAGCAAAC
CGCCTCGGCCTTGTACCGCACCAAACTGGTGCCGCATCTGGTGCAACATG
CTAGTCTGCAACCCGCCGCCGATTTACTCCCTCGCTTTGTGGGTACCCGG
ATTTTCACCTCGGGCTACTCTCCCATACTTGCCACGCACAAGCGTGCCAT
TCACATGATGGCCACATCACGCGTGCACCACCTGTTGTTGGCTCGCTTCG
AGCACTCGCTGCACGTGTTGCTGGGCAACAAGCAAGGCAGTCAGACTTAT
GCAGTCGCCTGTGTGGAAGGCGTGTGCAACGCCATGGCCGCCATTTCAAT
GCGCGCATTGTGCATACCCAGAAAACACGAGGATTCGGATGAACGCACCG
ACATTCAATATTCTGCCGGGCTCGGTCTAATCACCGCCTCTGTGTACAAC
GATTGTAAGGACTATCTCAACCTGCTGCGCTGTCCGGAGCCGGTCAAGAA
GCTGGTGAGCATGGCGTTTGAGCCGGCTGCCCACGAGCACCCCGACGTGT
TTTACCCAACCATGACGCTGTTGTGCTCGCTTTTGCGAGCGATGAGAAAG
AAGAAAAACTCTCTGTTCCCTTCCATGCGAAAGGCCGTGTCTGAGGTAGA
TACCGGCATAATCACCGGTGTGCTCCTCGATACAGTGCCGGTGTTGGCAC
AGAAGCTAAACGCTGACGGCGCTGTCATTGTTGGACGTGCGCGGCTGGCA
ATCGTGGATCTGGTACGAGAAGCATGTGTGACGATCAACGAGAAATCACT
TTGCAGGCTGCTAAGCGCCAACGACTACGCGCTACCGCGCGCCATGCTCG
CGCTGGCAGGCGCTTTCACCCGCAACGAAGTGGTGCTGACACGGGTGTCG
CAGGCGCTTGGGGCGGTGTTCTCGCGCCACAAGCAGCTCGGCATGCAGCT
GCTGCAGCACACGGACGTGTTTGGGTTCATGGTGCGGCTGAGGGAGTTGC
CGCCGACGTGGTGTTTGCTGCGCAGTTTTGTGTGCAGCGTTTGCTTTGAG
GAAGCCATGCAGCAGAGCAAGCACGACAGCAGCCGGCACGACACGCTGCT
GGAGCTGGAGGAGTTCTACGACGAGCACATCAAGGCCATGGAGGAAATCG
GCCTCGAGAAGGCGTCTGACCTAAAGCAGAGCAAACTCAGCCGCGACAGC
GTGGACTTTGACGTGGATGCTCTATACGGCCAGAGCGAAGACTACGGCGT
CGAGGTGTACATCCGTGGGCTGCTGCAGGAGGTTTCCGGCGAGAATGGGA
ACACGCCGCCGTCGGACAACGTGGTGCAGCATGCTGCGGAAGCGGTGCAT
AACGTCGCCGGAGCTTTTGCTGAGAAGCTCAGTAGAGGGTTACACTACCT
TCAAGATGATGAGTGA
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