Gvermi6736.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6736.t1
Unique Name	Gvermi6736.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	632

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2120832..2122727 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707863.1
Preferred name	SDH1
PFAMs	FAD_binding_2,Succ_DH_flav_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00045
KEGG ko	ko:K00234
KEGG Reaction	R02164
KEGG Pathway	ko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG Module	M00009,M00011,M00148
GOs	GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009061,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017076,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0030312,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0040011,GO:0042330,GO:0042331,GO:0042773,GO:0042775,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0046956,GO:0050896,GO:0050897,GO:0052128,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:0097159,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990204
Evalue	0.0
EggNOG OGs	COG1053@1\|root,KOG2403@2759\|Eukaryota
EC	1.3.5.1
Description	anaerobic respiration
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6736	Gvermi6736	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2120832..2122727 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6736.t1.stop1	Gvermi6736.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2120832..2120834 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6736.t1.CDS1	Gvermi6736.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2120832..2122727 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6736.t1.exon1	Gvermi6736.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2120832..2122727 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6736.t1.start1	Gvermi6736.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2122725..2122727 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6736.t1	Gvermi6736.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2120832..2122727 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2120832..2122727-
coding sequence from alignment at ScGOVlb_88:2120832..2122727-

mRNA sequence

>Gvermi6736.t1 ID=Gvermi6736.t1|Name=Gvermi6736.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=632bp
MLRGVSSRFLRRLCPAKRDLSTKTTKLGGYDVIDHEVDVCVVGAGGAGLR
ATIGACEAGLKTACVTKLFPTRSHTVAAQGGINGALGNMTKDDWRWHMYD
TVKGSDWLGDQDAIHYMCREAPDTIIELENYGVPFSRTEDGRIYQRAFGG
QSLEFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKHDANFFVEYFALDLI
MDPHDGSCRGVIALCMEDGSLHRFNAHSTIIATGGYGRCYFSATSAHTCT
GDGNAMVARAGIPLQDLEFVQFHPTGIYGAGCLITEGARGEGGFLKNANG
ERFMERYAPSAKDLASRDVVSRSMTIEIREGRGVGKDKDHIYLHLDHLEP
SVLKERLPGITETAKVFAGVDVHKEPIPVLPTVHYNMGGIPTNWRGEVVT
LKDGDPNHVVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRATAKRVA
ELVKPNSAHRPLPSDAGEQAIADMDKVRYADGELRTSEIRMNMQKIMQDH
AAVFRTDDSLKEGCKKIDECYEDFASVKTSDRDMIFNTDMVETLELRNLL
QNAAITMHSAEARKESRGAHAREDFTERDDEHWMKHTLGWISDHTEKKYK
RGFVEIDYRPVINTSLDDAEQTAFPPAKRTY*

spliced messenger RNA

>Gvermi6736.t1 ID=Gvermi6736.t1|Name=Gvermi6736.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at ScGOVlb_88:2120832..2122727- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGTGGCGTTTCATCCCGATTTCTGAGGAGGCTCTGCCCTGCAAA
GCGCGACCTCTCCACCAAAACCACAAAGCTTGGCGGCTACGACGTCATTG
ATCACGAAGTTGATGTCTGTGTCGTTGGTGCTGGAGGCGCCGGGCTTCGG
GCGACGATCGGAGCATGCGAGGCTGGATTGAAAACTGCATGCGTGACCAA
GCTTTTTCCCACGCGCTCGCACACGGTCGCTGCGCAAGGAGGCATCAACG
GTGCACTGGGCAACATGACAAAGGACGACTGGAGGTGGCACATGTATGAC
ACAGTCAAAGGTTCTGACTGGCTCGGTGACCAGGACGCCATCCACTACAT
GTGTCGAGAGGCTCCCGACACAATCATTGAACTTGAAAACTATGGTGTGC
CGTTTAGTCGCACTGAAGATGGGCGGATATACCAGCGTGCGTTTGGCGGG
CAGTCGCTTGAATTCGGAAAGGGCGGCCAGGCCTATAGATGTGCGGCGGC
AGCCGATCGAACGGGGCACGCCATGCTGCACACATTGTACGGCCAGTCGC
TGAAGCATGACGCTAACTTCTTTGTGGAGTACTTTGCACTGGACCTCATC
ATGGATCCGCACGACGGAAGCTGTCGTGGCGTCATTGCTCTGTGCATGGA
AGATGGATCTCTGCATCGCTTCAACGCACACTCAACAATCATTGCAACGG
GTGGGTACGGCAGATGTTACTTCAGCGCTACTTCTGCTCACACTTGTACC
GGTGACGGCAATGCCATGGTGGCGCGCGCCGGAATTCCTCTGCAGGATTT
AGAGTTTGTTCAGTTCCATCCCACCGGAATCTATGGTGCTGGCTGTCTCA
TTACGGAGGGTGCCCGCGGCGAAGGTGGTTTTCTCAAGAATGCAAACGGG
GAGCGCTTCATGGAAAGGTACGCTCCATCTGCCAAGGACCTGGCTTCACG
AGACGTGGTTTCACGTTCAATGACCATAGAGATCCGAGAAGGTCGCGGAG
TAGGCAAAGACAAGGATCACATCTACCTGCATCTGGACCACTTGGAACCA
TCAGTGCTGAAGGAGAGATTGCCGGGCATTACGGAAACAGCCAAGGTGTT
TGCCGGGGTAGACGTGCACAAGGAGCCTATTCCTGTGTTACCTACGGTGC
ACTACAACATGGGCGGTATTCCGACAAATTGGCGCGGTGAAGTGGTGACG
TTAAAGGATGGGGATCCTAACCACGTGGTACCTGGATTGCTTGCAGCCGG
GGAGGCGGCATGCGCAAGTGTGCATGGTGCAAACCGGCTAGGAGCGAACT
CGTTGCTGGATATCGTCGTGTTTGGACGTGCAACAGCGAAACGAGTAGCC
GAGCTTGTGAAGCCGAACAGTGCGCACCGACCGCTGCCGAGCGATGCCGG
TGAACAGGCGATTGCCGACATGGACAAGGTTCGTTACGCGGATGGGGAAC
TGCGCACATCCGAGATTCGGATGAATATGCAGAAGATTATGCAGGACCAT
GCTGCGGTGTTCCGCACGGATGACAGTTTGAAGGAAGGATGCAAGAAAAT
CGACGAGTGCTACGAGGACTTTGCGTCGGTGAAGACGAGTGATCGAGACA
TGATCTTTAATACAGATATGGTGGAAACCTTGGAGTTGAGGAACTTACTG
CAGAATGCAGCCATTACAATGCACAGCGCGGAGGCGCGAAAGGAGAGCCG
CGGAGCGCATGCGCGGGAAGACTTCACTGAAAGGGACGATGAGCACTGGA
TGAAGCACACGCTGGGGTGGATCAGCGACCACACTGAGAAGAAGTACAAA
CGGGGATTCGTAGAGATTGATTACCGACCGGTGATCAACACGAGCCTGGA
CGACGCGGAGCAAACGGCGTTCCCGCCTGCAAAGCGCACATACTAG

protein sequence of Gvermi6736.t1

>Gvermi6736.t1 ID=Gvermi6736.t1|Name=Gvermi6736.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=632bp
MLRGVSSRFLRRLCPAKRDLSTKTTKLGGYDVIDHEVDVCVVGAGGAGLR
ATIGACEAGLKTACVTKLFPTRSHTVAAQGGINGALGNMTKDDWRWHMYD
TVKGSDWLGDQDAIHYMCREAPDTIIELENYGVPFSRTEDGRIYQRAFGG
QSLEFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKHDANFFVEYFALDLI
MDPHDGSCRGVIALCMEDGSLHRFNAHSTIIATGGYGRCYFSATSAHTCT
GDGNAMVARAGIPLQDLEFVQFHPTGIYGAGCLITEGARGEGGFLKNANG
ERFMERYAPSAKDLASRDVVSRSMTIEIREGRGVGKDKDHIYLHLDHLEP
SVLKERLPGITETAKVFAGVDVHKEPIPVLPTVHYNMGGIPTNWRGEVVT
LKDGDPNHVVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRATAKRVA
ELVKPNSAHRPLPSDAGEQAIADMDKVRYADGELRTSEIRMNMQKIMQDH
AAVFRTDDSLKEGCKKIDECYEDFASVKTSDRDMIFNTDMVETLELRNLL
QNAAITMHSAEARKESRGAHAREDFTERDDEHWMKHTLGWISDHTEKKYK
RGFVEIDYRPVINTSLDDAEQTAFPPAKRTY*

mRNA from alignment at ScGOVlb_88:2120832..2122727-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6736.t1 ID=Gvermi6736.t1|Name=Gvermi6736.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at ScGOVlb_88:2120832..2122727- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCGTGGCGTTTCATCCCGATTTCTGAGGAGGCTCTGCCCTGCAAA
GCGCGACCTCTCCACCAAAACCACAAAGCTTGGCGGCTACGACGTCATTG
ATCACGAAGTTGATGTCTGTGTCGTTGGTGCTGGAGGCGCCGGGCTTCGG
GCGACGATCGGAGCATGCGAGGCTGGATTGAAAACTGCATGCGTGACCAA
GCTTTTTCCCACGCGCTCGCACACGGTCGCTGCGCAAGGAGGCATCAACG
GTGCACTGGGCAACATGACAAAGGACGACTGGAGGTGGCACATGTATGAC
ACAGTCAAAGGTTCTGACTGGCTCGGTGACCAGGACGCCATCCACTACAT
GTGTCGAGAGGCTCCCGACACAATCATTGAACTTGAAAACTATGGTGTGC
CGTTTAGTCGCACTGAAGATGGGCGGATATACCAGCGTGCGTTTGGCGGG
CAGTCGCTTGAATTCGGAAAGGGCGGCCAGGCCTATAGATGTGCGGCGGC
AGCCGATCGAACGGGGCACGCCATGCTGCACACATTGTACGGCCAGTCGC
TGAAGCATGACGCTAACTTCTTTGTGGAGTACTTTGCACTGGACCTCATC
ATGGATCCGCACGACGGAAGCTGTCGTGGCGTCATTGCTCTGTGCATGGA
AGATGGATCTCTGCATCGCTTCAACGCACACTCAACAATCATTGCAACGG
GTGGGTACGGCAGATGTTACTTCAGCGCTACTTCTGCTCACACTTGTACC
GGTGACGGCAATGCCATGGTGGCGCGCGCCGGAATTCCTCTGCAGGATTT
AGAGTTTGTTCAGTTCCATCCCACCGGAATCTATGGTGCTGGCTGTCTCA
TTACGGAGGGTGCCCGCGGCGAAGGTGGTTTTCTCAAGAATGCAAACGGG
GAGCGCTTCATGGAAAGGTACGCTCCATCTGCCAAGGACCTGGCTTCACG
AGACGTGGTTTCACGTTCAATGACCATAGAGATCCGAGAAGGTCGCGGAG
TAGGCAAAGACAAGGATCACATCTACCTGCATCTGGACCACTTGGAACCA
TCAGTGCTGAAGGAGAGATTGCCGGGCATTACGGAAACAGCCAAGGTGTT
TGCCGGGGTAGACGTGCACAAGGAGCCTATTCCTGTGTTACCTACGGTGC
ACTACAACATGGGCGGTATTCCGACAAATTGGCGCGGTGAAGTGGTGACG
TTAAAGGATGGGGATCCTAACCACGTGGTACCTGGATTGCTTGCAGCCGG
GGAGGCGGCATGCGCAAGTGTGCATGGTGCAAACCGGCTAGGAGCGAACT
CGTTGCTGGATATCGTCGTGTTTGGACGTGCAACAGCGAAACGAGTAGCC
GAGCTTGTGAAGCCGAACAGTGCGCACCGACCGCTGCCGAGCGATGCCGG
TGAACAGGCGATTGCCGACATGGACAAGGTTCGTTACGCGGATGGGGAAC
TGCGCACATCCGAGATTCGGATGAATATGCAGAAGATTATGCAGGACCAT
GCTGCGGTGTTCCGCACGGATGACAGTTTGAAGGAAGGATGCAAGAAAAT
CGACGAGTGCTACGAGGACTTTGCGTCGGTGAAGACGAGTGATCGAGACA
TGATCTTTAATACAGATATGGTGGAAACCTTGGAGTTGAGGAACTTACTG
CAGAATGCAGCCATTACAATGCACAGCGCGGAGGCGCGAAAGGAGAGCCG
CGGAGCGCATGCGCGGGAAGACTTCACTGAAAGGGACGATGAGCACTGGA
TGAAGCACACGCTGGGGTGGATCAGCGACCACACTGAGAAGAAGTACAAA
CGGGGATTCGTAGAGATTGATTACCGACCGGTGATCAACACGAGCCTGGA
CGACGCGGAGCAAACGGCGTTCCCGCCTGCAAAGCGCACATACTAG

Coding sequence (CDS) from alignment at ScGOVlb_88:2120832..2122727-

>Gvermi6736.t1 ID=Gvermi6736.t1|Name=Gvermi6736.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1896bp|location=Sequence derived from alignment at ScGOVlb_88:2120832..2122727- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCGTGGCGTTTCATCCCGATTTCTGAGGAGGCTCTGCCCTGCAAA
GCGCGACCTCTCCACCAAAACCACAAAGCTTGGCGGCTACGACGTCATTG
ATCACGAAGTTGATGTCTGTGTCGTTGGTGCTGGAGGCGCCGGGCTTCGG
GCGACGATCGGAGCATGCGAGGCTGGATTGAAAACTGCATGCGTGACCAA
GCTTTTTCCCACGCGCTCGCACACGGTCGCTGCGCAAGGAGGCATCAACG
GTGCACTGGGCAACATGACAAAGGACGACTGGAGGTGGCACATGTATGAC
ACAGTCAAAGGTTCTGACTGGCTCGGTGACCAGGACGCCATCCACTACAT
GTGTCGAGAGGCTCCCGACACAATCATTGAACTTGAAAACTATGGTGTGC
CGTTTAGTCGCACTGAAGATGGGCGGATATACCAGCGTGCGTTTGGCGGG
CAGTCGCTTGAATTCGGAAAGGGCGGCCAGGCCTATAGATGTGCGGCGGC
AGCCGATCGAACGGGGCACGCCATGCTGCACACATTGTACGGCCAGTCGC
TGAAGCATGACGCTAACTTCTTTGTGGAGTACTTTGCACTGGACCTCATC
ATGGATCCGCACGACGGAAGCTGTCGTGGCGTCATTGCTCTGTGCATGGA
AGATGGATCTCTGCATCGCTTCAACGCACACTCAACAATCATTGCAACGG
GTGGGTACGGCAGATGTTACTTCAGCGCTACTTCTGCTCACACTTGTACC
GGTGACGGCAATGCCATGGTGGCGCGCGCCGGAATTCCTCTGCAGGATTT
AGAGTTTGTTCAGTTCCATCCCACCGGAATCTATGGTGCTGGCTGTCTCA
TTACGGAGGGTGCCCGCGGCGAAGGTGGTTTTCTCAAGAATGCAAACGGG
GAGCGCTTCATGGAAAGGTACGCTCCATCTGCCAAGGACCTGGCTTCACG
AGACGTGGTTTCACGTTCAATGACCATAGAGATCCGAGAAGGTCGCGGAG
TAGGCAAAGACAAGGATCACATCTACCTGCATCTGGACCACTTGGAACCA
TCAGTGCTGAAGGAGAGATTGCCGGGCATTACGGAAACAGCCAAGGTGTT
TGCCGGGGTAGACGTGCACAAGGAGCCTATTCCTGTGTTACCTACGGTGC
ACTACAACATGGGCGGTATTCCGACAAATTGGCGCGGTGAAGTGGTGACG
TTAAAGGATGGGGATCCTAACCACGTGGTACCTGGATTGCTTGCAGCCGG
GGAGGCGGCATGCGCAAGTGTGCATGGTGCAAACCGGCTAGGAGCGAACT
CGTTGCTGGATATCGTCGTGTTTGGACGTGCAACAGCGAAACGAGTAGCC
GAGCTTGTGAAGCCGAACAGTGCGCACCGACCGCTGCCGAGCGATGCCGG
TGAACAGGCGATTGCCGACATGGACAAGGTTCGTTACGCGGATGGGGAAC
TGCGCACATCCGAGATTCGGATGAATATGCAGAAGATTATGCAGGACCAT
GCTGCGGTGTTCCGCACGGATGACAGTTTGAAGGAAGGATGCAAGAAAAT
CGACGAGTGCTACGAGGACTTTGCGTCGGTGAAGACGAGTGATCGAGACA
TGATCTTTAATACAGATATGGTGGAAACCTTGGAGTTGAGGAACTTACTG
CAGAATGCAGCCATTACAATGCACAGCGCGGAGGCGCGAAAGGAGAGCCG
CGGAGCGCATGCGCGGGAAGACTTCACTGAAAGGGACGATGAGCACTGGA
TGAAGCACACGCTGGGGTGGATCAGCGACCACACTGAGAAGAAGTACAAA
CGGGGATTCGTAGAGATTGATTACCGACCGGTGATCAACACGAGCCTGGA
CGACGCGGAGCAAACGGCGTTCCCGCCTGCAAAGCGCACATACTAG