Gvermi6733.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6733.t1
Unique NameGvermi6733.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2115128..2116012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_03913T0
PFAMsDUF3399,Ion_trans,Ion_trans_2
Max annot lvl2759|Eukaryota
KEGG koko:K04885,ko:K04892
KEGG TC1.A.1.2.1,1.A.1.2.11,1.A.1.2.21,1.A.1.2.3,1.A.1.2.5
KEGG Pathwayko04726,map04726
Evalue1.01e-34
EggNOG OGsCOG2126@1|root,KOG1419@2759|Eukaryota,KOG4390@2759|Eukaryota
DescriptionA-type (transient outward) potassium channel activity
COG categoryJ
BRITEko00000,ko00001,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6733Gvermi6733Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2115128..2116012 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6733.t1.stop1Gvermi6733.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2115128..2115130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6733.t1.CDS1Gvermi6733.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2115128..2116012 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6733.t1.exon1Gvermi6733.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2115128..2116012 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6733.t1.start1Gvermi6733.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2116010..2116012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6733.t1Gvermi6733.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2115128..2116012 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6733.t1 ID=Gvermi6733.t1|Name=Gvermi6733.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=295bp
MAEDSPLLPSSDYSADNSPMEDNSTSKSWRAVAYENVEGTIDSPLEYLIL
LLIFLNVVLLAVSTLVVDENCFGSKCLRMGDKYESFFELAEAVSVYIFTF
EYVLRIWACVESPSIGAKGPVAGRISYALSFFPIVDFLSIAPYWIFMIAG
GESPDFTTAFRVFRLIRLLKADKYLRAFSLLGKVLAENATLLIASSFYAV
LIWIVSATGLYLVEMDNPALGTHFQSIPQSLFPVLLMLTGEFPLADFSPW
GQLIASCIAVIAVAIFAVPSALLASSFVKAMQESTGREFTVEVG*
back to top

spliced messenger RNA

>Gvermi6733.t1 ID=Gvermi6733.t1|Name=Gvermi6733.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_88:2115128..2116012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGGACTCTCCTCTGCTCCCGTCTTCGGACTACAGCGCGGACAA
CTCACCAATGGAGGACAACTCCACGTCCAAGTCGTGGCGCGCAGTAGCTT
ACGAAAACGTCGAAGGAACTATCGATTCCCCCCTCGAGTACCTCATTCTG
CTCCTCATCTTCCTCAACGTCGTTCTACTTGCCGTCAGCACTCTCGTCGT
GGATGAAAATTGTTTCGGCTCAAAATGCCTGCGCATGGGTGACAAGTATG
AGTCATTCTTTGAGCTTGCCGAGGCTGTCTCCGTCTATATCTTCACCTTT
GAATACGTCCTTCGCATCTGGGCATGTGTGGAGAGCCCTTCCATCGGAGC
AAAGGGTCCTGTCGCCGGCCGTATCAGCTATGCACTCAGCTTCTTTCCAA
TCGTTGATTTTCTTTCCATCGCGCCGTATTGGATTTTCATGATTGCCGGC
GGAGAGTCCCCAGACTTCACCACTGCCTTTCGAGTCTTTCGTCTCATTCG
CTTGCTCAAGGCTGACAAGTATCTTCGTGCATTCTCGCTTCTCGGCAAGG
TGCTGGCGGAAAACGCAACTCTTCTCATTGCATCTTCCTTCTACGCTGTC
CTCATTTGGATCGTAAGTGCCACGGGCTTGTACCTCGTGGAGATGGACAA
CCCTGCCCTTGGAACACACTTCCAGTCTATTCCGCAATCCTTGTTTCCGG
TACTGCTTATGTTGACGGGAGAGTTTCCCTTGGCGGACTTCTCCCCGTGG
GGACAGCTCATTGCCAGTTGTATCGCTGTTATCGCTGTCGCTATATTTGC
CGTCCCCTCTGCGTTGCTGGCCTCGAGTTTTGTCAAGGCTATGCAGGAGT
CGACTGGTCGCGAATTCACCGTCGAGGTTGGCTAA
back to top

protein sequence of Gvermi6733.t1

>Gvermi6733.t1 ID=Gvermi6733.t1|Name=Gvermi6733.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=295bp
MAEDSPLLPSSDYSADNSPMEDNSTSKSWRAVAYENVEGTIDSPLEYLIL
LLIFLNVVLLAVSTLVVDENCFGSKCLRMGDKYESFFELAEAVSVYIFTF
EYVLRIWACVESPSIGAKGPVAGRISYALSFFPIVDFLSIAPYWIFMIAG
GESPDFTTAFRVFRLIRLLKADKYLRAFSLLGKVLAENATLLIASSFYAV
LIWIVSATGLYLVEMDNPALGTHFQSIPQSLFPVLLMLTGEFPLADFSPW
GQLIASCIAVIAVAIFAVPSALLASSFVKAMQESTGREFTVEVG*
back to top

mRNA from alignment at ScGOVlb_88:2115128..2116012-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6733.t1 ID=Gvermi6733.t1|Name=Gvermi6733.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_88:2115128..2116012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAGGACTCTCCTCTGCTCCCGTCTTCGGACTACAGCGCGGACAA
CTCACCAATGGAGGACAACTCCACGTCCAAGTCGTGGCGCGCAGTAGCTT
ACGAAAACGTCGAAGGAACTATCGATTCCCCCCTCGAGTACCTCATTCTG
CTCCTCATCTTCCTCAACGTCGTTCTACTTGCCGTCAGCACTCTCGTCGT
GGATGAAAATTGTTTCGGCTCAAAATGCCTGCGCATGGGTGACAAGTATG
AGTCATTCTTTGAGCTTGCCGAGGCTGTCTCCGTCTATATCTTCACCTTT
GAATACGTCCTTCGCATCTGGGCATGTGTGGAGAGCCCTTCCATCGGAGC
AAAGGGTCCTGTCGCCGGCCGTATCAGCTATGCACTCAGCTTCTTTCCAA
TCGTTGATTTTCTTTCCATCGCGCCGTATTGGATTTTCATGATTGCCGGC
GGAGAGTCCCCAGACTTCACCACTGCCTTTCGAGTCTTTCGTCTCATTCG
CTTGCTCAAGGCTGACAAGTATCTTCGTGCATTCTCGCTTCTCGGCAAGG
TGCTGGCGGAAAACGCAACTCTTCTCATTGCATCTTCCTTCTACGCTGTC
CTCATTTGGATCGTAAGTGCCACGGGCTTGTACCTCGTGGAGATGGACAA
CCCTGCCCTTGGAACACACTTCCAGTCTATTCCGCAATCCTTGTTTCCGG
TACTGCTTATGTTGACGGGAGAGTTTCCCTTGGCGGACTTCTCCCCGTGG
GGACAGCTCATTGCCAGTTGTATCGCTGTTATCGCTGTCGCTATATTTGC
CGTCCCCTCTGCGTTGCTGGCCTCGAGTTTTGTCAAGGCTATGCAGGAGT
CGACTGGTCGCGAATTCACCGTCGAGGTTGGCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2115128..2116012-

>Gvermi6733.t1 ID=Gvermi6733.t1|Name=Gvermi6733.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=885bp|location=Sequence derived from alignment at ScGOVlb_88:2115128..2116012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAGGACTCTCCTCTGCTCCCGTCTTCGGACTACAGCGCGGACAA
CTCACCAATGGAGGACAACTCCACGTCCAAGTCGTGGCGCGCAGTAGCTT
ACGAAAACGTCGAAGGAACTATCGATTCCCCCCTCGAGTACCTCATTCTG
CTCCTCATCTTCCTCAACGTCGTTCTACTTGCCGTCAGCACTCTCGTCGT
GGATGAAAATTGTTTCGGCTCAAAATGCCTGCGCATGGGTGACAAGTATG
AGTCATTCTTTGAGCTTGCCGAGGCTGTCTCCGTCTATATCTTCACCTTT
GAATACGTCCTTCGCATCTGGGCATGTGTGGAGAGCCCTTCCATCGGAGC
AAAGGGTCCTGTCGCCGGCCGTATCAGCTATGCACTCAGCTTCTTTCCAA
TCGTTGATTTTCTTTCCATCGCGCCGTATTGGATTTTCATGATTGCCGGC
GGAGAGTCCCCAGACTTCACCACTGCCTTTCGAGTCTTTCGTCTCATTCG
CTTGCTCAAGGCTGACAAGTATCTTCGTGCATTCTCGCTTCTCGGCAAGG
TGCTGGCGGAAAACGCAACTCTTCTCATTGCATCTTCCTTCTACGCTGTC
CTCATTTGGATCGTAAGTGCCACGGGCTTGTACCTCGTGGAGATGGACAA
CCCTGCCCTTGGAACACACTTCCAGTCTATTCCGCAATCCTTGTTTCCGG
TACTGCTTATGTTGACGGGAGAGTTTCCCTTGGCGGACTTCTCCCCGTGG
GGACAGCTCATTGCCAGTTGTATCGCTGTTATCGCTGTCGCTATATTTGC
CGTCCCCTCTGCGTTGCTGGCCTCGAGTTTTGTCAAGGCTATGCAGGAGT
CGACTGGTCGCGAATTCACCGTCGAGGTTGGCTAA
back to top