Gvermi6732.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6732.t1
Unique NameGvermi6732.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2113965..2114423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog411467.BACCAP_02117
PFAMsDUF177
Max annot lvl186801|Clostridia
KEGG koko:K07040
Evalue4.97e-09
EggNOG OGsCOG1399@1|root,COG1399@2|Bacteria,1VEXU@1239|Firmicutes,24RKT@186801|Clostridia,268VN@186813|unclassified Clostridiales
DescriptionUncharacterized ACR, COG1399
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6732Gvermi6732Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2113965..2114423 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6732.t1.start1Gvermi6732.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2113965..2113967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6732.t1.CDS1Gvermi6732.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2113965..2114423 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6732.t1.exon1Gvermi6732.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2113965..2114423 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6732.t1.stop1Gvermi6732.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2114421..2114423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6732.t1Gvermi6732.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2113965..2114423 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6732.t1 ID=Gvermi6732.t1|Name=Gvermi6732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=153bp
MPVEDRAGDEEVTVWLVASKEKGGILLRGRATGFLKRSCDRCGSAFDEKS
DGVFDVLLKSELEDVDESLYDDVKEVESDEIQVFGHVRDALYLGMQTRAL
CTEDCVGINPRNEAGTMDDELSGNLRKEGTIGERAAGSVLLEMKKRLEQR
GL*
back to top

spliced messenger RNA

>Gvermi6732.t1 ID=Gvermi6732.t1|Name=Gvermi6732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=459bp|location=Sequence derived from alignment at ScGOVlb_88:2113965..2114423+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTCGAAGACCGCGCTGGAGATGAGGAAGTGACCGTGTGGCTGGT
TGCATCGAAAGAAAAAGGTGGCATTTTGCTTCGTGGACGCGCAACGGGCT
TTCTGAAACGTTCTTGTGACCGATGCGGGTCTGCTTTTGACGAAAAAAGT
GATGGGGTCTTTGATGTTCTTCTGAAGTCAGAATTAGAAGATGTGGATGA
GAGTTTGTATGACGATGTAAAAGAAGTTGAATCGGACGAAATTCAAGTGT
TCGGACATGTTAGAGACGCTCTATACCTGGGAATGCAGACGAGGGCACTT
TGTACTGAAGACTGCGTTGGAATAAATCCGCGAAATGAAGCTGGCACTAT
GGATGACGAACTTTCCGGCAATTTACGGAAAGAAGGTACCATTGGGGAGC
GGGCGGCAGGCAGTGTTTTGCTAGAGATGAAGAAGAGATTGGAACAGCGT
GGCTTGTAG
back to top

protein sequence of Gvermi6732.t1

>Gvermi6732.t1 ID=Gvermi6732.t1|Name=Gvermi6732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bp
MPVEDRAGDEEVTVWLVASKEKGGILLRGRATGFLKRSCDRCGSAFDEKS
DGVFDVLLKSELEDVDESLYDDVKEVESDEIQVFGHVRDALYLGMQTRAL
CTEDCVGINPRNEAGTMDDELSGNLRKEGTIGERAAGSVLLEMKKRLEQR
GL*
back to top

mRNA from alignment at ScGOVlb_88:2113965..2114423+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6732.t1 ID=Gvermi6732.t1|Name=Gvermi6732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=459bp|location=Sequence derived from alignment at ScGOVlb_88:2113965..2114423+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGTCGAAGACCGCGCTGGAGATGAGGAAGTGACCGTGTGGCTGGT
TGCATCGAAAGAAAAAGGTGGCATTTTGCTTCGTGGACGCGCAACGGGCT
TTCTGAAACGTTCTTGTGACCGATGCGGGTCTGCTTTTGACGAAAAAAGT
GATGGGGTCTTTGATGTTCTTCTGAAGTCAGAATTAGAAGATGTGGATGA
GAGTTTGTATGACGATGTAAAAGAAGTTGAATCGGACGAAATTCAAGTGT
TCGGACATGTTAGAGACGCTCTATACCTGGGAATGCAGACGAGGGCACTT
TGTACTGAAGACTGCGTTGGAATAAATCCGCGAAATGAAGCTGGCACTAT
GGATGACGAACTTTCCGGCAATTTACGGAAAGAAGGTACCATTGGGGAGC
GGGCGGCAGGCAGTGTTTTGCTAGAGATGAAGAAGAGATTGGAACAGCGT
GGCTTGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2113965..2114423+

>Gvermi6732.t1 ID=Gvermi6732.t1|Name=Gvermi6732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=459bp|location=Sequence derived from alignment at ScGOVlb_88:2113965..2114423+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGTCGAAGACCGCGCTGGAGATGAGGAAGTGACCGTGTGGCTGGT
TGCATCGAAAGAAAAAGGTGGCATTTTGCTTCGTGGACGCGCAACGGGCT
TTCTGAAACGTTCTTGTGACCGATGCGGGTCTGCTTTTGACGAAAAAAGT
GATGGGGTCTTTGATGTTCTTCTGAAGTCAGAATTAGAAGATGTGGATGA
GAGTTTGTATGACGATGTAAAAGAAGTTGAATCGGACGAAATTCAAGTGT
TCGGACATGTTAGAGACGCTCTATACCTGGGAATGCAGACGAGGGCACTT
TGTACTGAAGACTGCGTTGGAATAAATCCGCGAAATGAAGCTGGCACTAT
GGATGACGAACTTTCCGGCAATTTACGGAAAGAAGGTACCATTGGGGAGC
GGGCGGCAGGCAGTGTTTTGCTAGAGATGAAGAAGAGATTGGAACAGCGT
GGCTTGTAG
back to top