Gvermi6728.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6728.t1
Unique NameGvermi6728.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length567
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2104931..2106631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707958.1
Preferred nameASNSD1
PFAMsAsn_synthase,GATase_7
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0004066,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0032787,GO:0034641,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046983,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue8.28e-91
EggNOG OGsCOG0367@1|root,KOG0573@2759|Eukaryota
Descriptionasparagine synthase (glutamine-hydrolyzing) activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6728Gvermi6728Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2104931..2106631 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6728.t1.stop1Gvermi6728.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2104931..2104933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6728.t1.CDS1Gvermi6728.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2104931..2106631 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6728.t1.exon1Gvermi6728.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2104931..2106631 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6728.t1.start1Gvermi6728.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2106629..2106631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6728.t1Gvermi6728.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2104931..2106631 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6728.t1 ID=Gvermi6728.t1|Name=Gvermi6728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=567bp
MCGIYAELVCSKIPSPPNWQFWTGTAPQCELPECKMSSYQGAIRQQLERR
GPDDQRTEVISVTETCTLCLTQTTLSLRGCLEEASTFKNKNRLLYNGELY
GGVDIDEDASDTRILSKYLTDNTSTRPLMPDILDTLKGPWTIIYWHALTK
RLYFARDCIGRRSLLVRVIPGERLILTSVAPKLDASGFAEVPPHGIGFID
VSGVPKFGLHKREFFSVVPRRALNFLGSGNNTRLVSGSDVDMYVSFLPRK
WLRSKAILKPLESLSPTQSVQKFITLFKQSIRRRLAINVPSNYHQPRFAV
LFSGGIDSMFLSFILESCLPEKEPLQLINVAFGNDTQSINQCPDRITAIH
GFNELQSLCSRRRTVEMLCVDVLPDQADDAADNHVRHLLHPCDQLMDASI
GTALWLASKGAGYRLGVDLENSREIVQTQAKVLFSGLGADELMGGYKGRH
RKIFQSEGINGILREMDADFSRLWFRNLGRDDRLIADHGREVRHPFLDED
LVDFITQLPLTEHVCDLSKPDGVGDKHLLRRAAKAVGLSDAAASRSKRAI
QFGSRSRHVLERKKKG*
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spliced messenger RNA

>Gvermi6728.t1 ID=Gvermi6728.t1|Name=Gvermi6728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at ScGOVlb_88:2104931..2106631- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGAATCTATGCAGAGTTGGTTTGTAGCAAAATTCCATCCCCGCC
AAACTGGCAATTTTGGACTGGCACGGCCCCACAATGCGAGTTGCCAGAGT
GTAAAATGTCATCGTATCAGGGTGCGATTCGCCAACAATTGGAACGACGG
GGACCAGATGATCAAAGGACAGAGGTCATCTCTGTTACTGAAACATGCAC
CCTTTGCTTGACTCAAACGACTCTTTCCCTTCGCGGGTGTCTGGAAGAGG
CAAGCACATTCAAAAACAAGAATAGGCTTTTGTATAACGGGGAGCTCTAT
GGCGGAGTAGATATTGATGAAGATGCTTCAGATACTCGGATTCTTTCCAA
GTACCTGACCGATAATACATCAACACGTCCATTAATGCCAGATATCTTGG
ACACGCTTAAGGGCCCATGGACAATCATATACTGGCATGCCTTGACCAAG
CGCTTGTATTTTGCCAGGGATTGTATTGGACGGCGTTCACTGCTTGTGAG
AGTCATACCAGGAGAGAGGCTTATTTTAACTTCGGTAGCGCCAAAACTCG
ATGCTTCTGGATTTGCTGAGGTTCCTCCGCATGGAATAGGGTTCATAGAT
GTTTCCGGTGTACCGAAATTTGGACTCCACAAGAGGGAATTCTTTTCGGT
TGTGCCTAGGCGTGCTTTGAATTTTCTAGGCAGTGGGAATAACACTCGTC
TTGTGAGTGGAAGCGATGTTGATATGTACGTTTCCTTTCTTCCAAGAAAA
TGGTTAAGAAGCAAAGCAATCTTGAAACCCTTGGAATCGCTATCACCCAC
ACAGTCCGTACAAAAGTTTATTACCCTGTTTAAGCAAAGTATCAGGAGAC
GTTTGGCAATCAATGTCCCTTCCAATTATCATCAGCCTAGATTCGCAGTG
CTATTCTCGGGAGGCATTGATTCCATGTTTCTATCTTTCATCCTGGAATC
GTGCCTCCCTGAAAAAGAACCACTCCAGCTAATAAATGTTGCATTTGGCA
ATGACACACAATCTATTAACCAGTGCCCAGATCGAATCACAGCCATCCAT
GGATTTAACGAACTGCAAAGTTTGTGTAGCAGAAGGAGAACCGTGGAAAT
GCTTTGCGTGGATGTACTTCCAGATCAAGCAGATGACGCTGCCGATAATC
ATGTGCGACATCTTTTGCACCCATGTGATCAGCTTATGGATGCTTCCATC
GGCACTGCTCTGTGGCTTGCTTCCAAAGGAGCCGGGTACAGACTTGGTGT
TGACTTGGAAAACTCGCGTGAGATTGTGCAAACGCAAGCAAAAGTACTGT
TTAGCGGTCTCGGGGCTGATGAACTGATGGGGGGGTACAAAGGTCGGCAT
CGTAAGATTTTCCAAAGCGAAGGAATTAACGGTATTCTTCGCGAAATGGA
CGCCGATTTTAGTAGATTGTGGTTTCGAAATCTAGGACGCGACGATAGGC
TCATCGCGGATCATGGAAGAGAGGTGCGCCACCCATTTCTCGATGAAGAT
TTAGTAGATTTCATTACTCAGTTGCCGTTGACAGAACATGTATGTGACCT
CTCGAAACCAGATGGTGTTGGTGATAAGCACTTGCTTCGAAGGGCCGCGA
AAGCTGTTGGACTGTCAGATGCAGCAGCCTCGCGCAGTAAGCGTGCAATA
CAATTCGGATCGAGAAGTCGACATGTTCTCGAAAGGAAGAAGAAAGGTTG
A
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protein sequence of Gvermi6728.t1

>Gvermi6728.t1 ID=Gvermi6728.t1|Name=Gvermi6728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=567bp
MCGIYAELVCSKIPSPPNWQFWTGTAPQCELPECKMSSYQGAIRQQLERR
GPDDQRTEVISVTETCTLCLTQTTLSLRGCLEEASTFKNKNRLLYNGELY
GGVDIDEDASDTRILSKYLTDNTSTRPLMPDILDTLKGPWTIIYWHALTK
RLYFARDCIGRRSLLVRVIPGERLILTSVAPKLDASGFAEVPPHGIGFID
VSGVPKFGLHKREFFSVVPRRALNFLGSGNNTRLVSGSDVDMYVSFLPRK
WLRSKAILKPLESLSPTQSVQKFITLFKQSIRRRLAINVPSNYHQPRFAV
LFSGGIDSMFLSFILESCLPEKEPLQLINVAFGNDTQSINQCPDRITAIH
GFNELQSLCSRRRTVEMLCVDVLPDQADDAADNHVRHLLHPCDQLMDASI
GTALWLASKGAGYRLGVDLENSREIVQTQAKVLFSGLGADELMGGYKGRH
RKIFQSEGINGILREMDADFSRLWFRNLGRDDRLIADHGREVRHPFLDED
LVDFITQLPLTEHVCDLSKPDGVGDKHLLRRAAKAVGLSDAAASRSKRAI
QFGSRSRHVLERKKKG*
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mRNA from alignment at ScGOVlb_88:2104931..2106631-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6728.t1 ID=Gvermi6728.t1|Name=Gvermi6728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at ScGOVlb_88:2104931..2106631- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGGAATCTATGCAGAGTTGGTTTGTAGCAAAATTCCATCCCCGCC
AAACTGGCAATTTTGGACTGGCACGGCCCCACAATGCGAGTTGCCAGAGT
GTAAAATGTCATCGTATCAGGGTGCGATTCGCCAACAATTGGAACGACGG
GGACCAGATGATCAAAGGACAGAGGTCATCTCTGTTACTGAAACATGCAC
CCTTTGCTTGACTCAAACGACTCTTTCCCTTCGCGGGTGTCTGGAAGAGG
CAAGCACATTCAAAAACAAGAATAGGCTTTTGTATAACGGGGAGCTCTAT
GGCGGAGTAGATATTGATGAAGATGCTTCAGATACTCGGATTCTTTCCAA
GTACCTGACCGATAATACATCAACACGTCCATTAATGCCAGATATCTTGG
ACACGCTTAAGGGCCCATGGACAATCATATACTGGCATGCCTTGACCAAG
CGCTTGTATTTTGCCAGGGATTGTATTGGACGGCGTTCACTGCTTGTGAG
AGTCATACCAGGAGAGAGGCTTATTTTAACTTCGGTAGCGCCAAAACTCG
ATGCTTCTGGATTTGCTGAGGTTCCTCCGCATGGAATAGGGTTCATAGAT
GTTTCCGGTGTACCGAAATTTGGACTCCACAAGAGGGAATTCTTTTCGGT
TGTGCCTAGGCGTGCTTTGAATTTTCTAGGCAGTGGGAATAACACTCGTC
TTGTGAGTGGAAGCGATGTTGATATGTACGTTTCCTTTCTTCCAAGAAAA
TGGTTAAGAAGCAAAGCAATCTTGAAACCCTTGGAATCGCTATCACCCAC
ACAGTCCGTACAAAAGTTTATTACCCTGTTTAAGCAAAGTATCAGGAGAC
GTTTGGCAATCAATGTCCCTTCCAATTATCATCAGCCTAGATTCGCAGTG
CTATTCTCGGGAGGCATTGATTCCATGTTTCTATCTTTCATCCTGGAATC
GTGCCTCCCTGAAAAAGAACCACTCCAGCTAATAAATGTTGCATTTGGCA
ATGACACACAATCTATTAACCAGTGCCCAGATCGAATCACAGCCATCCAT
GGATTTAACGAACTGCAAAGTTTGTGTAGCAGAAGGAGAACCGTGGAAAT
GCTTTGCGTGGATGTACTTCCAGATCAAGCAGATGACGCTGCCGATAATC
ATGTGCGACATCTTTTGCACCCATGTGATCAGCTTATGGATGCTTCCATC
GGCACTGCTCTGTGGCTTGCTTCCAAAGGAGCCGGGTACAGACTTGGTGT
TGACTTGGAAAACTCGCGTGAGATTGTGCAAACGCAAGCAAAAGTACTGT
TTAGCGGTCTCGGGGCTGATGAACTGATGGGGGGGTACAAAGGTCGGCAT
CGTAAGATTTTCCAAAGCGAAGGAATTAACGGTATTCTTCGCGAAATGGA
CGCCGATTTTAGTAGATTGTGGTTTCGAAATCTAGGACGCGACGATAGGC
TCATCGCGGATCATGGAAGAGAGGTGCGCCACCCATTTCTCGATGAAGAT
TTAGTAGATTTCATTACTCAGTTGCCGTTGACAGAACATGTATGTGACCT
CTCGAAACCAGATGGTGTTGGTGATAAGCACTTGCTTCGAAGGGCCGCGA
AAGCTGTTGGACTGTCAGATGCAGCAGCCTCGCGCAGTAAGCGTGCAATA
CAATTCGGATCGAGAAGTCGACATGTTCTCGAAAGGAAGAAGAAAGGTTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_88:2104931..2106631-

>Gvermi6728.t1 ID=Gvermi6728.t1|Name=Gvermi6728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1701bp|location=Sequence derived from alignment at ScGOVlb_88:2104931..2106631- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGGAATCTATGCAGAGTTGGTTTGTAGCAAAATTCCATCCCCGCC
AAACTGGCAATTTTGGACTGGCACGGCCCCACAATGCGAGTTGCCAGAGT
GTAAAATGTCATCGTATCAGGGTGCGATTCGCCAACAATTGGAACGACGG
GGACCAGATGATCAAAGGACAGAGGTCATCTCTGTTACTGAAACATGCAC
CCTTTGCTTGACTCAAACGACTCTTTCCCTTCGCGGGTGTCTGGAAGAGG
CAAGCACATTCAAAAACAAGAATAGGCTTTTGTATAACGGGGAGCTCTAT
GGCGGAGTAGATATTGATGAAGATGCTTCAGATACTCGGATTCTTTCCAA
GTACCTGACCGATAATACATCAACACGTCCATTAATGCCAGATATCTTGG
ACACGCTTAAGGGCCCATGGACAATCATATACTGGCATGCCTTGACCAAG
CGCTTGTATTTTGCCAGGGATTGTATTGGACGGCGTTCACTGCTTGTGAG
AGTCATACCAGGAGAGAGGCTTATTTTAACTTCGGTAGCGCCAAAACTCG
ATGCTTCTGGATTTGCTGAGGTTCCTCCGCATGGAATAGGGTTCATAGAT
GTTTCCGGTGTACCGAAATTTGGACTCCACAAGAGGGAATTCTTTTCGGT
TGTGCCTAGGCGTGCTTTGAATTTTCTAGGCAGTGGGAATAACACTCGTC
TTGTGAGTGGAAGCGATGTTGATATGTACGTTTCCTTTCTTCCAAGAAAA
TGGTTAAGAAGCAAAGCAATCTTGAAACCCTTGGAATCGCTATCACCCAC
ACAGTCCGTACAAAAGTTTATTACCCTGTTTAAGCAAAGTATCAGGAGAC
GTTTGGCAATCAATGTCCCTTCCAATTATCATCAGCCTAGATTCGCAGTG
CTATTCTCGGGAGGCATTGATTCCATGTTTCTATCTTTCATCCTGGAATC
GTGCCTCCCTGAAAAAGAACCACTCCAGCTAATAAATGTTGCATTTGGCA
ATGACACACAATCTATTAACCAGTGCCCAGATCGAATCACAGCCATCCAT
GGATTTAACGAACTGCAAAGTTTGTGTAGCAGAAGGAGAACCGTGGAAAT
GCTTTGCGTGGATGTACTTCCAGATCAAGCAGATGACGCTGCCGATAATC
ATGTGCGACATCTTTTGCACCCATGTGATCAGCTTATGGATGCTTCCATC
GGCACTGCTCTGTGGCTTGCTTCCAAAGGAGCCGGGTACAGACTTGGTGT
TGACTTGGAAAACTCGCGTGAGATTGTGCAAACGCAAGCAAAAGTACTGT
TTAGCGGTCTCGGGGCTGATGAACTGATGGGGGGGTACAAAGGTCGGCAT
CGTAAGATTTTCCAAAGCGAAGGAATTAACGGTATTCTTCGCGAAATGGA
CGCCGATTTTAGTAGATTGTGGTTTCGAAATCTAGGACGCGACGATAGGC
TCATCGCGGATCATGGAAGAGAGGTGCGCCACCCATTTCTCGATGAAGAT
TTAGTAGATTTCATTACTCAGTTGCCGTTGACAGAACATGTATGTGACCT
CTCGAAACCAGATGGTGTTGGTGATAAGCACTTGCTTCGAAGGGCCGCGA
AAGCTGTTGGACTGTCAGATGCAGCAGCCTCGCGCAGTAAGCGTGCAATA
CAATTCGGATCGAGAAGTCGACATGTTCTCGAAAGGAAGAAGAAAGGTTG
A
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