Gvermi6727.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6727.t1
Unique NameGvermi6727.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2103719..2104868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706352.1
Preferred nameTHOC6
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K03257,ko:K13175,ko:K18327
KEGG Pathwayko03013,map03013
KEGG ModuleM00405,M00406,M00428
GOsGO:0000151,GO:0000346,GO:0000347,GO:0000445,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006464,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0007275,GO:0007399,GO:0007417,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009266,GO:0009408,GO:0009628,GO:0009787,GO:0009788,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010267,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016567,GO:0016604,GO:0016607,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030422,GO:0031047,GO:0031050,GO:0031123,GO:0031124,GO:0031461,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033554,GO:0034605,GO:0034613,GO:0034641,GO:0035194,GO:0036211,GO:0040029,GO:0042221,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044417,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044766,GO:0045184,GO:0046483,GO:0046784,GO:0046907,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051716,GO:0051836,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0070647,GO:0070727,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071407,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080008,GO:0090304,GO:1901360,GO:1901419,GO:1901420,GO:1901564,GO:1901698,GO:1901699,GO:1902494,GO:1902579,GO:1905957,GO:1905958,GO:1990234
Evalue1.38e-08
EggNOG OGsKOG0649@1|root,KOG0649@2759|Eukaryota
Descriptionviral mRNA export from host cell nucleus
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03012,ko03019,ko03041,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6727Gvermi6727Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2103719..2104868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6727.t1Gvermi6727.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2103719..2104868 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6727.t1.start1Gvermi6727.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2103719..2103721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6727.t1.CDS1Gvermi6727.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2103719..2104285 +
Gvermi6727.t1.CDS2Gvermi6727.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2104353..2104868 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6727.t1.exon1Gvermi6727.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2103719..2104285 +
Gvermi6727.t1.exon2Gvermi6727.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2104353..2104868 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6727.t1.intron1Gvermi6727.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2104286..2104352 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6727.t1.stop1Gvermi6727.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2104866..2104868 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6727.t1 ID=Gvermi6727.t1|Name=Gvermi6727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=361bp
MAFFDTDGYKRHLRRRISDSTTLVFALAFDPSGSFLAAGTTNGLLKIFSL
PSIALSCYNSPLTPQKCSFQDLSRHGSINGIEITKRHLYVATDSGLLCFE
WKRLINPILGGGSERYPIPVVLLGGVQINAVITLGHQSQATSVVAATGEG
ALIKVVDGGKKLLQIGETIAKDAYPHCVAGNTDPNVFLAGCNDCKIRQYD
TRKPMPLVDTYSLKHTNLSPVKAYISSLAMHGDSNFVMIADSGKNLTSFH
LPSASTVCSARIPFCPQATVFADGYFYCGGSDITSTGSSSAESCIQRCDV
SFQTFDSLASSTSSVYAMAASSAGAVAAGGHSLMKSDEEELAERADVYIC
PPVRSFSVFV*
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spliced messenger RNA

>Gvermi6727.t1 ID=Gvermi6727.t1|Name=Gvermi6727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at ScGOVlb_88:2103719..2104868+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCTTCGACACAGATGGTTACAAGAGGCACTTGCGTCGTCGCAT
TTCTGATTCCACAACCCTCGTGTTCGCTCTGGCATTCGACCCCTCAGGAT
CTTTCCTTGCGGCAGGAACGACGAATGGCTTGTTAAAGATTTTCTCTCTG
CCTTCCATTGCTCTTTCTTGTTATAATTCGCCGCTCACTCCTCAGAAGTG
CTCTTTTCAAGACTTGTCTAGGCACGGCTCAATTAATGGAATTGAAATTA
CCAAACGCCACCTTTACGTCGCCACCGATAGCGGTCTTCTATGTTTCGAA
TGGAAACGATTAATCAATCCCATTCTGGGTGGTGGTTCCGAGAGATACCC
CATCCCAGTCGTCCTACTCGGTGGCGTACAGATTAACGCTGTCATCACTC
TTGGGCATCAATCGCAAGCCACCTCTGTTGTTGCAGCTACGGGAGAAGGA
GCATTAATCAAAGTCGTTGATGGTGGAAAGAAACTCCTTCAGATTGGCGA
AACCATCGCAAAAGATGCCTATCCCCATTGCGTTGCAGGAAACACAGATC
CCAACGTCTTCCTGGCGGGGTGCAATGACTGCAAGATACGACAATACGAT
ACCCGCAAGCCCATGCCACTGGTGGACACTTATTCTTTGAAGCATACCAA
CCTATCCCCCGTCAAGGCGTACATATCTTCCCTTGCCATGCACGGAGATT
CTAATTTTGTCATGATTGCAGACAGTGGCAAAAACCTCACATCATTTCAT
CTTCCGTCAGCATCCACAGTTTGTTCCGCACGAATACCTTTCTGTCCACA
AGCGACTGTTTTTGCTGACGGTTATTTCTATTGTGGGGGCTCAGATATTA
CTAGCACTGGTTCATCTTCTGCCGAAAGTTGTATACAGCGTTGCGACGTC
AGCTTCCAAACTTTTGACTCACTTGCATCGTCTACTTCAAGCGTTTATGC
CATGGCAGCGTCTTCGGCGGGAGCTGTAGCGGCCGGAGGCCATTCCCTGA
TGAAGTCGGATGAGGAAGAGCTCGCGGAAAGGGCTGATGTGTATATATGT
CCCCCGGTCCGTTCTTTTTCAGTGTTCGTGTAA
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protein sequence of Gvermi6727.t1

>Gvermi6727.t1 ID=Gvermi6727.t1|Name=Gvermi6727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=361bp
MAFFDTDGYKRHLRRRISDSTTLVFALAFDPSGSFLAAGTTNGLLKIFSL
PSIALSCYNSPLTPQKCSFQDLSRHGSINGIEITKRHLYVATDSGLLCFE
WKRLINPILGGGSERYPIPVVLLGGVQINAVITLGHQSQATSVVAATGEG
ALIKVVDGGKKLLQIGETIAKDAYPHCVAGNTDPNVFLAGCNDCKIRQYD
TRKPMPLVDTYSLKHTNLSPVKAYISSLAMHGDSNFVMIADSGKNLTSFH
LPSASTVCSARIPFCPQATVFADGYFYCGGSDITSTGSSSAESCIQRCDV
SFQTFDSLASSTSSVYAMAASSAGAVAAGGHSLMKSDEEELAERADVYIC
PPVRSFSVFV*
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mRNA from alignment at ScGOVlb_88:2103719..2104868+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6727.t1 ID=Gvermi6727.t1|Name=Gvermi6727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1150bp|location=Sequence derived from alignment at ScGOVlb_88:2103719..2104868+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTCTTCGACACAGATGGTTACAAGAGGCACTTGCGTCGTCGCAT
TTCTGATTCCACAACCCTCGTGTTCGCTCTGGCATTCGACCCCTCAGGAT
CTTTCCTTGCGGCAGGAACGACGAATGGCTTGTTAAAGATTTTCTCTCTG
CCTTCCATTGCTCTTTCTTGTTATAATTCGCCGCTCACTCCTCAGAAGTG
CTCTTTTCAAGACTTGTCTAGGCACGGCTCAATTAATGGAATTGAAATTA
CCAAACGCCACCTTTACGTCGCCACCGATAGCGGTCTTCTATGTTTCGAA
TGGAAACGATTAATCAATCCCATTCTGGGTGGTGGTTCCGAGAGATACCC
CATCCCAGTCGTCCTACTCGGTGGCGTACAGATTAACGCTGTCATCACTC
TTGGGCATCAATCGCAAGCCACCTCTGTTGTTGCAGCTACGGGAGAAGGA
GCATTAATCAAAGTCGTTGATGGTGGAAAGAAACTCCTTCAGATTGGCGA
AACCATCGCAAAAGATGCCTATCCCCATTGCGTTGCAGGAAACACAGATC
CCAACGTCTTCCTGGCGGTGAGTTACATCAAACACTAAAATTAGCAACAT
AACGATTACTAACATGTTCTCTTTGCCGCGAAAGGGGTGCAATGACTGCA
AGATACGACAATACGATACCCGCAAGCCCATGCCACTGGTGGACACTTAT
TCTTTGAAGCATACCAACCTATCCCCCGTCAAGGCGTACATATCTTCCCT
TGCCATGCACGGAGATTCTAATTTTGTCATGATTGCAGACAGTGGCAAAA
ACCTCACATCATTTCATCTTCCGTCAGCATCCACAGTTTGTTCCGCACGA
ATACCTTTCTGTCCACAAGCGACTGTTTTTGCTGACGGTTATTTCTATTG
TGGGGGCTCAGATATTACTAGCACTGGTTCATCTTCTGCCGAAAGTTGTA
TACAGCGTTGCGACGTCAGCTTCCAAACTTTTGACTCACTTGCATCGTCT
ACTTCAAGCGTTTATGCCATGGCAGCGTCTTCGGCGGGAGCTGTAGCGGC
CGGAGGCCATTCCCTGATGAAGTCGGATGAGGAAGAGCTCGCGGAAAGGG
CTGATGTGTATATATGTCCCCCGGTCCGTTCTTTTTCAGTGTTCGTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2103719..2104868+

>Gvermi6727.t1 ID=Gvermi6727.t1|Name=Gvermi6727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1083bp|location=Sequence derived from alignment at ScGOVlb_88:2103719..2104868+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTCTTCGACACAGATGGTTACAAGAGGCACTTGCGTCGTCGCAT
TTCTGATTCCACAACCCTCGTGTTCGCTCTGGCATTCGACCCCTCAGGAT
CTTTCCTTGCGGCAGGAACGACGAATGGCTTGTTAAAGATTTTCTCTCTG
CCTTCCATTGCTCTTTCTTGTTATAATTCGCCGCTCACTCCTCAGAAGTG
CTCTTTTCAAGACTTGTCTAGGCACGGCTCAATTAATGGAATTGAAATTA
CCAAACGCCACCTTTACGTCGCCACCGATAGCGGTCTTCTATGTTTCGAA
TGGAAACGATTAATCAATCCCATTCTGGGTGGTGGTTCCGAGAGATACCC
CATCCCAGTCGTCCTACTCGGTGGCGTACAGATTAACGCTGTCATCACTC
TTGGGCATCAATCGCAAGCCACCTCTGTTGTTGCAGCTACGGGAGAAGGA
GCATTAATCAAAGTCGTTGATGGTGGAAAGAAACTCCTTCAGATTGGCGA
AACCATCGCAAAAGATGCCTATCCCCATTGCGTTGCAGGAAACACAGATC
CCAACGTCTTCCTGGCGGGGTGCAATGACTGCAAGATACGACAATACGAT
ACCCGCAAGCCCATGCCACTGGTGGACACTTATTCTTTGAAGCATACCAA
CCTATCCCCCGTCAAGGCGTACATATCTTCCCTTGCCATGCACGGAGATT
CTAATTTTGTCATGATTGCAGACAGTGGCAAAAACCTCACATCATTTCAT
CTTCCGTCAGCATCCACAGTTTGTTCCGCACGAATACCTTTCTGTCCACA
AGCGACTGTTTTTGCTGACGGTTATTTCTATTGTGGGGGCTCAGATATTA
CTAGCACTGGTTCATCTTCTGCCGAAAGTTGTATACAGCGTTGCGACGTC
AGCTTCCAAACTTTTGACTCACTTGCATCGTCTACTTCAAGCGTTTATGC
CATGGCAGCGTCTTCGGCGGGAGCTGTAGCGGCCGGAGGCCATTCCCTGA
TGAAGTCGGATGAGGAAGAGCTCGCGGAAAGGGCTGATGTGTATATATGT
CCCCCGGTCCGTTCTTTTTCAGTGTTCGTGTAA
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