Gvermi6726.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6726.t1
Unique NameGvermi6726.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2101333..2102127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4897.EEB06729
PFAMsPho88
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0006605,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006886,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015698,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098827
Evalue3.84e-07
EggNOG OGsCOG5065@1|root,KOG4554@2759|Eukaryota,39SHB@33154|Opisthokonta,3P02T@4751|Fungi,3QR76@4890|Ascomycota,3MCY2@451866|Taphrinomycotina
DescriptionPho88 family
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6726Gvermi6726Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2101333..2102127 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6726.t1.stop1Gvermi6726.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2101333..2101335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6726.t1.CDS1Gvermi6726.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2101333..2102127 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6726.t1.exon1Gvermi6726.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2101333..2102127 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6726.t1.start1Gvermi6726.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2102125..2102127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6726.t1Gvermi6726.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2101333..2102127 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6726.t1 ID=Gvermi6726.t1|Name=Gvermi6726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=265bp
MLVMFGTMYALRKVDQEEPIVLFYARLAFVAYILVVTSLYALLHWRITSR
CDLTPVTVPLKSKSPSFWETMEQAQKVAEKKAETSETTETTEVKDDKPSK
NEEDKQEQSNNEEPKTETITVMEYDLRTLAGARKSWVMNCLILAAINYKT
ESVSAIVMSPLMTIMKLVTEDPLFLIHLCGAPSVEKLKRPFAAPESPFAA
MFKEMAPKDLSQAHQAKNDKPIVEELHGESESEEEDSGPTRLTDLGDDHI
KGDFDEEEEPKKTK*
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spliced messenger RNA

>Gvermi6726.t1 ID=Gvermi6726.t1|Name=Gvermi6726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp|location=Sequence derived from alignment at ScGOVlb_88:2101333..2102127- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTCATGTTCGGTACTATGTACGCGCTCAGGAAAGTAGATCAGGA
GGAGCCCATTGTTTTGTTTTACGCGCGGCTGGCCTTTGTTGCGTACATAC
TCGTCGTAACGTCGCTCTACGCACTGCTGCACTGGCGCATTACATCTCGG
TGTGACTTGACTCCTGTTACTGTTCCCTTGAAATCCAAATCCCCTTCATT
CTGGGAGACTATGGAACAGGCCCAAAAGGTAGCCGAGAAGAAAGCTGAAA
CGTCAGAAACCACAGAAACCACAGAGGTCAAGGATGACAAACCCTCAAAA
AATGAGGAGGACAAACAAGAACAGTCGAACAACGAAGAACCCAAGACTGA
AACCATCACCGTCATGGAGTATGATCTACGAACACTCGCAGGCGCAAGAA
AAAGCTGGGTCATGAACTGTCTCATATTGGCTGCCATTAATTACAAGACC
GAGTCAGTCAGCGCAATAGTGATGTCGCCGTTGATGACTATCATGAAACT
TGTCACAGAAGACCCGCTTTTCCTTATCCATCTTTGCGGTGCTCCGTCTG
TGGAAAAGCTCAAGCGACCCTTCGCCGCCCCAGAAAGTCCCTTTGCTGCT
ATGTTTAAGGAAATGGCTCCGAAAGACCTATCGCAAGCTCACCAAGCGAA
AAACGACAAACCTATCGTGGAGGAGCTTCACGGAGAGAGTGAAAGCGAGG
AAGAAGACTCTGGTCCTACACGGCTCACGGATCTTGGCGATGATCATATC
AAGGGCGATTTTGACGAAGAAGAGGAGCCGAAGAAGACTAAGTAA
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protein sequence of Gvermi6726.t1

>Gvermi6726.t1 ID=Gvermi6726.t1|Name=Gvermi6726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=265bp
MLVMFGTMYALRKVDQEEPIVLFYARLAFVAYILVVTSLYALLHWRITSR
CDLTPVTVPLKSKSPSFWETMEQAQKVAEKKAETSETTETTEVKDDKPSK
NEEDKQEQSNNEEPKTETITVMEYDLRTLAGARKSWVMNCLILAAINYKT
ESVSAIVMSPLMTIMKLVTEDPLFLIHLCGAPSVEKLKRPFAAPESPFAA
MFKEMAPKDLSQAHQAKNDKPIVEELHGESESEEEDSGPTRLTDLGDDHI
KGDFDEEEEPKKTK*
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mRNA from alignment at ScGOVlb_88:2101333..2102127-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6726.t1 ID=Gvermi6726.t1|Name=Gvermi6726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp|location=Sequence derived from alignment at ScGOVlb_88:2101333..2102127- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGTCATGTTCGGTACTATGTACGCGCTCAGGAAAGTAGATCAGGA
GGAGCCCATTGTTTTGTTTTACGCGCGGCTGGCCTTTGTTGCGTACATAC
TCGTCGTAACGTCGCTCTACGCACTGCTGCACTGGCGCATTACATCTCGG
TGTGACTTGACTCCTGTTACTGTTCCCTTGAAATCCAAATCCCCTTCATT
CTGGGAGACTATGGAACAGGCCCAAAAGGTAGCCGAGAAGAAAGCTGAAA
CGTCAGAAACCACAGAAACCACAGAGGTCAAGGATGACAAACCCTCAAAA
AATGAGGAGGACAAACAAGAACAGTCGAACAACGAAGAACCCAAGACTGA
AACCATCACCGTCATGGAGTATGATCTACGAACACTCGCAGGCGCAAGAA
AAAGCTGGGTCATGAACTGTCTCATATTGGCTGCCATTAATTACAAGACC
GAGTCAGTCAGCGCAATAGTGATGTCGCCGTTGATGACTATCATGAAACT
TGTCACAGAAGACCCGCTTTTCCTTATCCATCTTTGCGGTGCTCCGTCTG
TGGAAAAGCTCAAGCGACCCTTCGCCGCCCCAGAAAGTCCCTTTGCTGCT
ATGTTTAAGGAAATGGCTCCGAAAGACCTATCGCAAGCTCACCAAGCGAA
AAACGACAAACCTATCGTGGAGGAGCTTCACGGAGAGAGTGAAAGCGAGG
AAGAAGACTCTGGTCCTACACGGCTCACGGATCTTGGCGATGATCATATC
AAGGGCGATTTTGACGAAGAAGAGGAGCCGAAGAAGACTAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2101333..2102127-

>Gvermi6726.t1 ID=Gvermi6726.t1|Name=Gvermi6726.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=795bp|location=Sequence derived from alignment at ScGOVlb_88:2101333..2102127- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGTCATGTTCGGTACTATGTACGCGCTCAGGAAAGTAGATCAGGA
GGAGCCCATTGTTTTGTTTTACGCGCGGCTGGCCTTTGTTGCGTACATAC
TCGTCGTAACGTCGCTCTACGCACTGCTGCACTGGCGCATTACATCTCGG
TGTGACTTGACTCCTGTTACTGTTCCCTTGAAATCCAAATCCCCTTCATT
CTGGGAGACTATGGAACAGGCCCAAAAGGTAGCCGAGAAGAAAGCTGAAA
CGTCAGAAACCACAGAAACCACAGAGGTCAAGGATGACAAACCCTCAAAA
AATGAGGAGGACAAACAAGAACAGTCGAACAACGAAGAACCCAAGACTGA
AACCATCACCGTCATGGAGTATGATCTACGAACACTCGCAGGCGCAAGAA
AAAGCTGGGTCATGAACTGTCTCATATTGGCTGCCATTAATTACAAGACC
GAGTCAGTCAGCGCAATAGTGATGTCGCCGTTGATGACTATCATGAAACT
TGTCACAGAAGACCCGCTTTTCCTTATCCATCTTTGCGGTGCTCCGTCTG
TGGAAAAGCTCAAGCGACCCTTCGCCGCCCCAGAAAGTCCCTTTGCTGCT
ATGTTTAAGGAAATGGCTCCGAAAGACCTATCGCAAGCTCACCAAGCGAA
AAACGACAAACCTATCGTGGAGGAGCTTCACGGAGAGAGTGAAAGCGAGG
AAGAAGACTCTGGTCCTACACGGCTCACGGATCTTGGCGATGATCATATC
AAGGGCGATTTTGACGAAGAAGAGGAGCCGAAGAAGACTAAGTAA
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