Gvermi6723.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6723.t1
Unique NameGvermi6723.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2094945..2095578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8469.XP_007069586.1
Preferred nameNDUFAF3
PFAMsDUF498
Max annot lvl33208|Metazoa
KEGG koko:K09008
KEGG Pathwayko04714,map04714
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010257,GO:0016020,GO:0016043,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0033108,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0065003,GO:0071840
Evalue1.07e-22
EggNOG OGsKOG3363@1|root,KOG3363@2759|Eukaryota,3A05D@33154|Opisthokonta,3BQ2C@33208|Metazoa,3D0PQ@33213|Bilateria,4889T@7711|Chordata,496JJ@7742|Vertebrata,4CIP1@8459|Testudines
DescriptionNADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor 3
COG categoryS
BRITEko00000,ko00001,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6723Gvermi6723Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2094945..2095578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6723.t1Gvermi6723.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2094945..2095578 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6723.t1.stop1Gvermi6723.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2094945..2094947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6723.t1.CDS1Gvermi6723.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2094945..2095112 -
Gvermi6723.t1.CDS2Gvermi6723.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2095201..2095578 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6723.t1.exon1Gvermi6723.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2094945..2095112 -
Gvermi6723.t1.exon2Gvermi6723.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2095201..2095578 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6723.t1.intron1Gvermi6723.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2095113..2095200 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6723.t1.start1Gvermi6723.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2095576..2095578 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6723.t1 ID=Gvermi6723.t1|Name=Gvermi6723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=182bp
MKTAGLLRLLHGERRRLFCSKSGAQGPPDLFPRRPERKPFDSLGYELIDT
TTEPQGAQRAVIDSIGTGSFTISGVRVYGSVLIMPSFSTIWNVDHIRQVC
PGSFALIKLIIPRPDIVLVGTGSVSHPLSSDVMNFFKEIRVNVEAMDTKN
ACHTFNVLNQEDRNVAAALFPVAYTESKAQS*
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spliced messenger RNA

>Gvermi6723.t1 ID=Gvermi6723.t1|Name=Gvermi6723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=546bp|location=Sequence derived from alignment at ScGOVlb_88:2094945..2095578- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACAGCGGGTCTACTACGTCTCTTGCACGGCGAGAGAAGACGACT
GTTTTGCTCGAAATCGGGAGCGCAAGGACCCCCGGATCTGTTTCCACGAC
GTCCAGAGAGGAAACCGTTTGATTCCCTTGGATATGAGCTTATAGACACT
ACCACTGAGCCGCAAGGTGCTCAAAGAGCCGTAATTGACTCGATCGGAAC
AGGTTCATTCACGATAAGCGGCGTTCGTGTATACGGATCAGTGCTTATCA
TGCCTTCCTTTTCTACTATTTGGAATGTGGACCACATTCGGCAAGTCTGC
CCGGGCTCATTTGCGCTAATTAAACTTATCATCCCGCGGCCAGATATAGT
GCTTGTGGGGACGGGAAGTGTATCACATCCTCTCTCGTCCGATGTCATGA
ATTTCTTCAAAGAGATACGGGTCAATGTAGAAGCAATGGACACGAAGAAC
GCATGTCACACTTTCAATGTGCTGAATCAAGAAGACAGAAATGTTGCTGC
CGCTCTATTTCCGGTGGCCTACACAGAAAGTAAAGCCCAGTCATGA
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protein sequence of Gvermi6723.t1

>Gvermi6723.t1 ID=Gvermi6723.t1|Name=Gvermi6723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=182bp
MKTAGLLRLLHGERRRLFCSKSGAQGPPDLFPRRPERKPFDSLGYELIDT
TTEPQGAQRAVIDSIGTGSFTISGVRVYGSVLIMPSFSTIWNVDHIRQVC
PGSFALIKLIIPRPDIVLVGTGSVSHPLSSDVMNFFKEIRVNVEAMDTKN
ACHTFNVLNQEDRNVAAALFPVAYTESKAQS*
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mRNA from alignment at ScGOVlb_88:2094945..2095578-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6723.t1 ID=Gvermi6723.t1|Name=Gvermi6723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=634bp|location=Sequence derived from alignment at ScGOVlb_88:2094945..2095578- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGACAGCGGGTCTACTACGTCTCTTGCACGGCGAGAGAAGACGACT
GTTTTGCTCGAAATCGGGAGCGCAAGGACCCCCGGATCTGTTTCCACGAC
GTCCAGAGAGGAAACCGTTTGATTCCCTTGGATATGAGCTTATAGACACT
ACCACTGAGCCGCAAGGTGCTCAAAGAGCCGTAATTGACTCGATCGGAAC
AGGTTCATTCACGATAAGCGGCGTTCGTGTATACGGATCAGTGCTTATCA
TGCCTTCCTTTTCTACTATTTGGAATGTGGACCACATTCGGCAAGTCTGC
CCGGGCTCATTTGCGCTAATTAAACTTATCATCCCGCGGCCAGATATAGT
GCTTGTGGGGACGGGAAGTGTATCACATGTACGTATAACAATTTTCGGTA
CTACCATGCTCGCATCGGTTCCACTAACACGTTGTGAATTTGTGTCGATG
AACTGCACGTTGTCAGCCTCTCTCGTCCGATGTCATGAATTTCTTCAAAG
AGATACGGGTCAATGTAGAAGCAATGGACACGAAGAACGCATGTCACACT
TTCAATGTGCTGAATCAAGAAGACAGAAATGTTGCTGCCGCTCTATTTCC
GGTGGCCTACACAGAAAGTAAAGCCCAGTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2094945..2095578-

>Gvermi6723.t1 ID=Gvermi6723.t1|Name=Gvermi6723.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=546bp|location=Sequence derived from alignment at ScGOVlb_88:2094945..2095578- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGACAGCGGGTCTACTACGTCTCTTGCACGGCGAGAGAAGACGACT
GTTTTGCTCGAAATCGGGAGCGCAAGGACCCCCGGATCTGTTTCCACGAC
GTCCAGAGAGGAAACCGTTTGATTCCCTTGGATATGAGCTTATAGACACT
ACCACTGAGCCGCAAGGTGCTCAAAGAGCCGTAATTGACTCGATCGGAAC
AGGTTCATTCACGATAAGCGGCGTTCGTGTATACGGATCAGTGCTTATCA
TGCCTTCCTTTTCTACTATTTGGAATGTGGACCACATTCGGCAAGTCTGC
CCGGGCTCATTTGCGCTAATTAAACTTATCATCCCGCGGCCAGATATAGT
GCTTGTGGGGACGGGAAGTGTATCACATCCTCTCTCGTCCGATGTCATGA
ATTTCTTCAAAGAGATACGGGTCAATGTAGAAGCAATGGACACGAAGAAC
GCATGTCACACTTTCAATGTGCTGAATCAAGAAGACAGAAATGTTGCTGC
CGCTCTATTTCCGGTGGCCTACACAGAAAGTAAAGCCCAGTCATGA
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