Gvermi6722.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6722.t1
Unique NameGvermi6722.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2092720..2093988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO94752
PFAMsMFS_1
Max annot lvl3041|Chlorophyta
Evalue4.69e-103
EggNOG OGsCOG0477@1|root,KOG2533@2759|Eukaryota,37SWN@33090|Viridiplantae,34HC8@3041|Chlorophyta
DescriptionMajor Facilitator Superfamily
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6722Gvermi6722Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2092720..2093988 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6722.t1.start1Gvermi6722.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2092720..2092722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6722.t1.CDS1Gvermi6722.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2092720..2093988 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6722.t1.exon1Gvermi6722.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2092720..2093988 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6722.t1.stop1Gvermi6722.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2093986..2093988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6722.t1Gvermi6722.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2092720..2093988 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6722.t1 ID=Gvermi6722.t1|Name=Gvermi6722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=423bp
MLMAYATYYITRFSFPFAAPIMQEELNLSLQQVGIISSCFPATYGVSKLF
GGMAADLRSPRLMLSAGLLLAAFCNAIFAAGSSLSFFAVIWALNGLVSSV
GFPACAKLLSVWFSRSERGTYWGLLNVSLNVGGAVSPVIVGATAAKYGWQ
CGMLLPALMALVMGVLSFTAISDSPNASKLPPTPLLPPPQKEKKSDSAWI
TFVQQLRKGVIQERSVWLLAAAYFFVYVVRQALTSWTIFYLMKERGIVSL
AEAGLRVSGLEIGGLLGSVTSGWLSDLLIRRNASAGAIGLRIQVVLFYVV
LTAFCVSAFFAIPVTRTLMPLQWALFALTGVGLYGQQLLVGLCSTECVDR
RYAGTSNGFVGLLAYAGAALAGFPLSLCVKQFGWGALQAVVIGCSIMVAL
LVLPLLRKHSHEQKIALVNVDC*
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spliced messenger RNA

>Gvermi6722.t1 ID=Gvermi6722.t1|Name=Gvermi6722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_88:2092720..2093988+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTATGGCATACGCTACATACTATATAACCCGATTCAGCTTCCCCTT
CGCTGCCCCAATTATGCAGGAAGAACTCAACTTGTCACTACAACAAGTCG
GCATAATTTCCTCATGTTTCCCTGCAACTTATGGAGTTTCCAAGCTATTT
GGGGGTATGGCCGCTGATCTACGATCTCCACGACTAATGCTCTCGGCTGG
ACTTTTGCTAGCGGCATTTTGCAATGCTATATTCGCTGCTGGCAGTTCCC
TTTCCTTTTTCGCGGTTATTTGGGCGTTGAACGGCCTTGTATCAAGTGTT
GGCTTTCCTGCTTGTGCAAAACTTCTCTCCGTTTGGTTTTCACGTTCTGA
GCGAGGGACATACTGGGGTCTACTCAACGTCAGTCTCAATGTCGGCGGAG
CAGTATCTCCGGTCATAGTTGGTGCGACGGCTGCAAAGTATGGTTGGCAG
TGCGGAATGCTCCTTCCCGCATTGATGGCTTTAGTCATGGGTGTTTTATC
GTTTACCGCGATATCGGATTCTCCTAATGCTTCCAAGCTTCCTCCGACCC
CATTACTGCCCCCTCCACAGAAAGAGAAAAAGTCAGACTCTGCGTGGATT
ACTTTTGTGCAACAACTACGGAAGGGCGTTATTCAAGAGCGCTCTGTTTG
GCTGCTCGCTGCCGCATACTTTTTCGTGTACGTTGTGCGCCAAGCGCTCA
CGAGCTGGACCATATTTTATCTAATGAAAGAACGTGGAATTGTCAGTCTT
GCGGAAGCTGGTCTGAGGGTATCCGGTCTTGAAATTGGAGGGTTGCTAGG
CAGCGTTACTTCGGGATGGCTTTCGGATCTACTAATCAGAAGAAACGCAT
CAGCTGGGGCGATTGGTTTGCGAATCCAGGTAGTCCTATTTTACGTTGTA
TTAACGGCTTTCTGCGTTTCTGCCTTTTTTGCGATTCCGGTAACTCGCAC
CCTCATGCCATTGCAGTGGGCTCTATTTGCACTGACAGGTGTTGGGTTGT
ACGGGCAGCAACTCTTAGTCGGATTGTGCAGCACGGAGTGTGTGGATCGT
CGATATGCTGGAACCAGTAACGGTTTTGTCGGCTTGTTGGCGTATGCCGG
GGCCGCTCTTGCTGGTTTCCCACTGTCACTGTGTGTTAAGCAATTTGGCT
GGGGTGCACTGCAGGCTGTCGTCATCGGATGCTCGATAATGGTAGCGTTG
CTCGTTCTGCCATTGCTCAGAAAACATTCTCATGAACAGAAGATTGCCCT
TGTAAACGTGGATTGCTGA
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protein sequence of Gvermi6722.t1

>Gvermi6722.t1 ID=Gvermi6722.t1|Name=Gvermi6722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=423bp
MLMAYATYYITRFSFPFAAPIMQEELNLSLQQVGIISSCFPATYGVSKLF
GGMAADLRSPRLMLSAGLLLAAFCNAIFAAGSSLSFFAVIWALNGLVSSV
GFPACAKLLSVWFSRSERGTYWGLLNVSLNVGGAVSPVIVGATAAKYGWQ
CGMLLPALMALVMGVLSFTAISDSPNASKLPPTPLLPPPQKEKKSDSAWI
TFVQQLRKGVIQERSVWLLAAAYFFVYVVRQALTSWTIFYLMKERGIVSL
AEAGLRVSGLEIGGLLGSVTSGWLSDLLIRRNASAGAIGLRIQVVLFYVV
LTAFCVSAFFAIPVTRTLMPLQWALFALTGVGLYGQQLLVGLCSTECVDR
RYAGTSNGFVGLLAYAGAALAGFPLSLCVKQFGWGALQAVVIGCSIMVAL
LVLPLLRKHSHEQKIALVNVDC*
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mRNA from alignment at ScGOVlb_88:2092720..2093988+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6722.t1 ID=Gvermi6722.t1|Name=Gvermi6722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_88:2092720..2093988+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTATGGCATACGCTACATACTATATAACCCGATTCAGCTTCCCCTT
CGCTGCCCCAATTATGCAGGAAGAACTCAACTTGTCACTACAACAAGTCG
GCATAATTTCCTCATGTTTCCCTGCAACTTATGGAGTTTCCAAGCTATTT
GGGGGTATGGCCGCTGATCTACGATCTCCACGACTAATGCTCTCGGCTGG
ACTTTTGCTAGCGGCATTTTGCAATGCTATATTCGCTGCTGGCAGTTCCC
TTTCCTTTTTCGCGGTTATTTGGGCGTTGAACGGCCTTGTATCAAGTGTT
GGCTTTCCTGCTTGTGCAAAACTTCTCTCCGTTTGGTTTTCACGTTCTGA
GCGAGGGACATACTGGGGTCTACTCAACGTCAGTCTCAATGTCGGCGGAG
CAGTATCTCCGGTCATAGTTGGTGCGACGGCTGCAAAGTATGGTTGGCAG
TGCGGAATGCTCCTTCCCGCATTGATGGCTTTAGTCATGGGTGTTTTATC
GTTTACCGCGATATCGGATTCTCCTAATGCTTCCAAGCTTCCTCCGACCC
CATTACTGCCCCCTCCACAGAAAGAGAAAAAGTCAGACTCTGCGTGGATT
ACTTTTGTGCAACAACTACGGAAGGGCGTTATTCAAGAGCGCTCTGTTTG
GCTGCTCGCTGCCGCATACTTTTTCGTGTACGTTGTGCGCCAAGCGCTCA
CGAGCTGGACCATATTTTATCTAATGAAAGAACGTGGAATTGTCAGTCTT
GCGGAAGCTGGTCTGAGGGTATCCGGTCTTGAAATTGGAGGGTTGCTAGG
CAGCGTTACTTCGGGATGGCTTTCGGATCTACTAATCAGAAGAAACGCAT
CAGCTGGGGCGATTGGTTTGCGAATCCAGGTAGTCCTATTTTACGTTGTA
TTAACGGCTTTCTGCGTTTCTGCCTTTTTTGCGATTCCGGTAACTCGCAC
CCTCATGCCATTGCAGTGGGCTCTATTTGCACTGACAGGTGTTGGGTTGT
ACGGGCAGCAACTCTTAGTCGGATTGTGCAGCACGGAGTGTGTGGATCGT
CGATATGCTGGAACCAGTAACGGTTTTGTCGGCTTGTTGGCGTATGCCGG
GGCCGCTCTTGCTGGTTTCCCACTGTCACTGTGTGTTAAGCAATTTGGCT
GGGGTGCACTGCAGGCTGTCGTCATCGGATGCTCGATAATGGTAGCGTTG
CTCGTTCTGCCATTGCTCAGAAAACATTCTCATGAACAGAAGATTGCCCT
TGTAAACGTGGATTGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2092720..2093988+

>Gvermi6722.t1 ID=Gvermi6722.t1|Name=Gvermi6722.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1269bp|location=Sequence derived from alignment at ScGOVlb_88:2092720..2093988+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTATGGCATACGCTACATACTATATAACCCGATTCAGCTTCCCCTT
CGCTGCCCCAATTATGCAGGAAGAACTCAACTTGTCACTACAACAAGTCG
GCATAATTTCCTCATGTTTCCCTGCAACTTATGGAGTTTCCAAGCTATTT
GGGGGTATGGCCGCTGATCTACGATCTCCACGACTAATGCTCTCGGCTGG
ACTTTTGCTAGCGGCATTTTGCAATGCTATATTCGCTGCTGGCAGTTCCC
TTTCCTTTTTCGCGGTTATTTGGGCGTTGAACGGCCTTGTATCAAGTGTT
GGCTTTCCTGCTTGTGCAAAACTTCTCTCCGTTTGGTTTTCACGTTCTGA
GCGAGGGACATACTGGGGTCTACTCAACGTCAGTCTCAATGTCGGCGGAG
CAGTATCTCCGGTCATAGTTGGTGCGACGGCTGCAAAGTATGGTTGGCAG
TGCGGAATGCTCCTTCCCGCATTGATGGCTTTAGTCATGGGTGTTTTATC
GTTTACCGCGATATCGGATTCTCCTAATGCTTCCAAGCTTCCTCCGACCC
CATTACTGCCCCCTCCACAGAAAGAGAAAAAGTCAGACTCTGCGTGGATT
ACTTTTGTGCAACAACTACGGAAGGGCGTTATTCAAGAGCGCTCTGTTTG
GCTGCTCGCTGCCGCATACTTTTTCGTGTACGTTGTGCGCCAAGCGCTCA
CGAGCTGGACCATATTTTATCTAATGAAAGAACGTGGAATTGTCAGTCTT
GCGGAAGCTGGTCTGAGGGTATCCGGTCTTGAAATTGGAGGGTTGCTAGG
CAGCGTTACTTCGGGATGGCTTTCGGATCTACTAATCAGAAGAAACGCAT
CAGCTGGGGCGATTGGTTTGCGAATCCAGGTAGTCCTATTTTACGTTGTA
TTAACGGCTTTCTGCGTTTCTGCCTTTTTTGCGATTCCGGTAACTCGCAC
CCTCATGCCATTGCAGTGGGCTCTATTTGCACTGACAGGTGTTGGGTTGT
ACGGGCAGCAACTCTTAGTCGGATTGTGCAGCACGGAGTGTGTGGATCGT
CGATATGCTGGAACCAGTAACGGTTTTGTCGGCTTGTTGGCGTATGCCGG
GGCCGCTCTTGCTGGTTTCCCACTGTCACTGTGTGTTAAGCAATTTGGCT
GGGGTGCACTGCAGGCTGTCGTCATCGGATGCTCGATAATGGTAGCGTTG
CTCGTTCTGCCATTGCTCAGAAAACATTCTCATGAACAGAAGATTGCCCT
TGTAAACGTGGATTGCTGA
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