Gvermi6720.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6720.t1
Unique Name	Gvermi6720.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2088242..2089843 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705677.1
PFAMs	DUF295,F-box,RHD3
Max annot lvl	2759\|Eukaryota
Evalue	4.12e-59
EggNOG OGs	KOG2203@1\|root,KOG2203@2759\|Eukaryota
Description	GTP binding
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6720	Gvermi6720	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2088242..2089843 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6720.t1.start1	Gvermi6720.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2088242..2088244 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6720.t1.CDS1	Gvermi6720.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2088242..2089843 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6720.t1.exon1	Gvermi6720.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2088242..2089843 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6720.t1.stop1	Gvermi6720.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2089841..2089843 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6720.t1	Gvermi6720.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2088242..2089843 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2088242..2089843+
coding sequence from alignment at ScGOVlb_88:2088242..2089843+

mRNA sequence

>Gvermi6720.t1 ID=Gvermi6720.t1|Name=Gvermi6720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=534bp
MAELSINGLQAAAAVAGDAFATVFATSPRNASVNRLLSAALDVSISVPTP
DPHNAPGKQSRKSSTRDAQMLCAGAVPGGPLLITLDGLHESTIRPSFERC
MALAASLSGVIMLSVRMYDLMRSSSSGVAQVMAAIERCLSLRVSGVAPPL
PTRRLFIVAVRDYESDEVDQVELEQAIEDQLSAAYREIDLPSGYSATQFS
DLFDIQVYTLPNDKHCEADFQAAANKLGAALRETNNKYADAGITPERLSD
FTARIRDALSREPGSDLPEERELTATFACNAIMKSVLDKYRISTKHWKTQ
VDAGRVIAKFGVENDRRIERTLEVFDKDAFAYKASKAYQRKRDELKSRLL
SDSYALFAKQILKVRENSYQFFRGKLARIRITDKVEKHVKGAVNEAERYF
VEHGEALRSKLGSWRFDNEREELVNHMRDDATERLQLARLQGNYVPSIRA
PIAFAFHTLLLAPFGQDSRAQVPYADEMKQTYDPDKAKQAFIMRVRPFQR
SDAISLKDSDELPSSAVDVLAPLFEDDATTKGS*

spliced messenger RNA

>Gvermi6720.t1 ID=Gvermi6720.t1|Name=Gvermi6720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at ScGOVlb_88:2088242..2089843+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGCTCTCAATCAACGGTCTGCAGGCCGCGGCTGCCGTTGCTGG
CGATGCTTTTGCAACTGTTTTCGCCACCTCTCCTCGCAACGCCTCCGTCA
ACCGATTGCTTTCCGCCGCCCTCGATGTCAGTATCTCCGTCCCGACACCC
GATCCTCACAACGCACCCGGTAAACAATCGCGCAAGTCATCGACACGCGA
TGCGCAAATGTTGTGTGCTGGAGCCGTCCCGGGCGGCCCCCTGCTAATCA
CATTGGATGGCCTACATGAAAGTACCATCCGCCCTTCTTTTGAACGCTGT
ATGGCGCTTGCCGCTTCTCTCTCAGGCGTCATCATGCTCAGTGTCCGCAT
GTACGATCTAATGAGATCATCCTCCTCTGGAGTTGCTCAAGTCATGGCTG
CCATCGAGCGGTGTCTCTCACTCCGTGTATCGGGAGTAGCACCACCGCTT
CCGACCAGACGCCTGTTTATTGTAGCtgtgcgcgattatgaaagtgatga
ggtcgaccaagttgaacTGGAACAAGCTATCGAAGACCAATTATCAGCAG
CGTACAGAGAAATCGACCTTCCCTCGGGTTATTCGGCCACTCAGTTCTCA
GATTTATTCGATATCCAAGTCTATACGCTACCCAACGACAAGCATTGTGA
GGCCGATTTTCAAGCAGCTGCAAACAAGCTAGGTGCCGCTTTGAGAGAAA
CAAACAACAAGTACGCCGATGCAGGAATCACCCCAGAACGACTGTCAGAC
TTCACTGCAAGGATCCGGGATGCTCTCTCTCGTGAACCCGGCTCCGATCT
GCCTGAAGAGCGGGAACTCACGGCCACTTTTGCGTGCAATGCAATCATGA
AGAGTGTTCTTGACAAGTATCGAATCTCCACCAAGCATTGGAAAACACAA
GTAGATGCGGGCCGAGTCATTGCCAAATTTGGCGTTGAGAACGACCGCCG
CATAGAGAGAACGCTCGAAGTGTTTGACAAAGATGCCTTTGCATATAAAG
CATCCAAAGCATACCAAAGAAAGAGGGATGAGCTGAAATCCCGATTGCTT
TCTGACTCATATGCTTTGTTTGCGAAACAGATTCTCAAAGTTCGAGAGAA
CTCTTATCAGTTCTTCCGTGGAAAGCTTGCAAGAATCAGAATCACAGACA
AGGTGGAAAAACATGTCAAAGGAGCCGTCAATGAAGCCGAAAGATACTTT
GTCGAGCATGGAGAGGCCCTGCGTTCCAAGCTAGGCAGTTGGCGTTTCGA
CAATGAGCGTGAAGAACTTGTCAACCATATGCGAGATGATGCCACGGAGA
GACTGCAACTGGCTCGATTGCAGGGGAACTATGTCCCGTCTATTCGGGCG
CCGATTGCGTTTGCATTTCATACACTTTTGTTAGCGCCTTTCGGACAAGA
TTCTCGCGCGCAAGTGCCCTACGCCGACGAAATGAAGCAGACGTATGATC
CAGATAAGGCTAAGCAAGCCTTTATTATGCGCGTCAGACCTTTCCAGAGG
AGCGACGCCATTTCTTTGAAGGACTCTGACGAACTCCCCTCAAGCGCTGT
TGACGTACTTGCTCCGCTCTTTGAGGATGATGCGACAACTAAAGGCTCTT
GA

protein sequence of Gvermi6720.t1

>Gvermi6720.t1 ID=Gvermi6720.t1|Name=Gvermi6720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=534bp
MAELSINGLQAAAAVAGDAFATVFATSPRNASVNRLLSAALDVSISVPTP
DPHNAPGKQSRKSSTRDAQMLCAGAVPGGPLLITLDGLHESTIRPSFERC
MALAASLSGVIMLSVRMYDLMRSSSSGVAQVMAAIERCLSLRVSGVAPPL
PTRRLFIVAVRDYESDEVDQVELEQAIEDQLSAAYREIDLPSGYSATQFS
DLFDIQVYTLPNDKHCEADFQAAANKLGAALRETNNKYADAGITPERLSD
FTARIRDALSREPGSDLPEERELTATFACNAIMKSVLDKYRISTKHWKTQ
VDAGRVIAKFGVENDRRIERTLEVFDKDAFAYKASKAYQRKRDELKSRLL
SDSYALFAKQILKVRENSYQFFRGKLARIRITDKVEKHVKGAVNEAERYF
VEHGEALRSKLGSWRFDNEREELVNHMRDDATERLQLARLQGNYVPSIRA
PIAFAFHTLLLAPFGQDSRAQVPYADEMKQTYDPDKAKQAFIMRVRPFQR
SDAISLKDSDELPSSAVDVLAPLFEDDATTKGS*

mRNA from alignment at ScGOVlb_88:2088242..2089843+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6720.t1 ID=Gvermi6720.t1|Name=Gvermi6720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at ScGOVlb_88:2088242..2089843+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAGCTCTCAATCAACGGTCTGCAGGCCGCGGCTGCCGTTGCTGG
CGATGCTTTTGCAACTGTTTTCGCCACCTCTCCTCGCAACGCCTCCGTCA
ACCGATTGCTTTCCGCCGCCCTCGATGTCAGTATCTCCGTCCCGACACCC
GATCCTCACAACGCACCCGGTAAACAATCGCGCAAGTCATCGACACGCGA
TGCGCAAATGTTGTGTGCTGGAGCCGTCCCGGGCGGCCCCCTGCTAATCA
CATTGGATGGCCTACATGAAAGTACCATCCGCCCTTCTTTTGAACGCTGT
ATGGCGCTTGCCGCTTCTCTCTCAGGCGTCATCATGCTCAGTGTCCGCAT
GTACGATCTAATGAGATCATCCTCCTCTGGAGTTGCTCAAGTCATGGCTG
CCATCGAGCGGTGTCTCTCACTCCGTGTATCGGGAGTAGCACCACCGCTT
CCGACCAGACGCCTGTTTATTGTAGCtgtgcgcgattatgaaagtgatga
ggtcgaccaagttgaacTGGAACAAGCTATCGAAGACCAATTATCAGCAG
CGTACAGAGAAATCGACCTTCCCTCGGGTTATTCGGCCACTCAGTTCTCA
GATTTATTCGATATCCAAGTCTATACGCTACCCAACGACAAGCATTGTGA
GGCCGATTTTCAAGCAGCTGCAAACAAGCTAGGTGCCGCTTTGAGAGAAA
CAAACAACAAGTACGCCGATGCAGGAATCACCCCAGAACGACTGTCAGAC
TTCACTGCAAGGATCCGGGATGCTCTCTCTCGTGAACCCGGCTCCGATCT
GCCTGAAGAGCGGGAACTCACGGCCACTTTTGCGTGCAATGCAATCATGA
AGAGTGTTCTTGACAAGTATCGAATCTCCACCAAGCATTGGAAAACACAA
GTAGATGCGGGCCGAGTCATTGCCAAATTTGGCGTTGAGAACGACCGCCG
CATAGAGAGAACGCTCGAAGTGTTTGACAAAGATGCCTTTGCATATAAAG
CATCCAAAGCATACCAAAGAAAGAGGGATGAGCTGAAATCCCGATTGCTT
TCTGACTCATATGCTTTGTTTGCGAAACAGATTCTCAAAGTTCGAGAGAA
CTCTTATCAGTTCTTCCGTGGAAAGCTTGCAAGAATCAGAATCACAGACA
AGGTGGAAAAACATGTCAAAGGAGCCGTCAATGAAGCCGAAAGATACTTT
GTCGAGCATGGAGAGGCCCTGCGTTCCAAGCTAGGCAGTTGGCGTTTCGA
CAATGAGCGTGAAGAACTTGTCAACCATATGCGAGATGATGCCACGGAGA
GACTGCAACTGGCTCGATTGCAGGGGAACTATGTCCCGTCTATTCGGGCG
CCGATTGCGTTTGCATTTCATACACTTTTGTTAGCGCCTTTCGGACAAGA
TTCTCGCGCGCAAGTGCCCTACGCCGACGAAATGAAGCAGACGTATGATC
CAGATAAGGCTAAGCAAGCCTTTATTATGCGCGTCAGACCTTTCCAGAGG
AGCGACGCCATTTCTTTGAAGGACTCTGACGAACTCCCCTCAAGCGCTGT
TGACGTACTTGCTCCGCTCTTTGAGGATGATGCGACAACTAAAGGCTCTT
GA

Coding sequence (CDS) from alignment at ScGOVlb_88:2088242..2089843+

>Gvermi6720.t1 ID=Gvermi6720.t1|Name=Gvermi6720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1602bp|location=Sequence derived from alignment at ScGOVlb_88:2088242..2089843+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAGCTCTCAATCAACGGTCTGCAGGCCGCGGCTGCCGTTGCTGG
CGATGCTTTTGCAACTGTTTTCGCCACCTCTCCTCGCAACGCCTCCGTCA
ACCGATTGCTTTCCGCCGCCCTCGATGTCAGTATCTCCGTCCCGACACCC
GATCCTCACAACGCACCCGGTAAACAATCGCGCAAGTCATCGACACGCGA
TGCGCAAATGTTGTGTGCTGGAGCCGTCCCGGGCGGCCCCCTGCTAATCA
CATTGGATGGCCTACATGAAAGTACCATCCGCCCTTCTTTTGAACGCTGT
ATGGCGCTTGCCGCTTCTCTCTCAGGCGTCATCATGCTCAGTGTCCGCAT
GTACGATCTAATGAGATCATCCTCCTCTGGAGTTGCTCAAGTCATGGCTG
CCATCGAGCGGTGTCTCTCACTCCGTGTATCGGGAGTAGCACCACCGCTT
CCGACCAGACGCCTGTTTATTGTAGCtgtgcgcgattatgaaagtgatga
ggtcgaccaagttgaacTGGAACAAGCTATCGAAGACCAATTATCAGCAG
CGTACAGAGAAATCGACCTTCCCTCGGGTTATTCGGCCACTCAGTTCTCA
GATTTATTCGATATCCAAGTCTATACGCTACCCAACGACAAGCATTGTGA
GGCCGATTTTCAAGCAGCTGCAAACAAGCTAGGTGCCGCTTTGAGAGAAA
CAAACAACAAGTACGCCGATGCAGGAATCACCCCAGAACGACTGTCAGAC
TTCACTGCAAGGATCCGGGATGCTCTCTCTCGTGAACCCGGCTCCGATCT
GCCTGAAGAGCGGGAACTCACGGCCACTTTTGCGTGCAATGCAATCATGA
AGAGTGTTCTTGACAAGTATCGAATCTCCACCAAGCATTGGAAAACACAA
GTAGATGCGGGCCGAGTCATTGCCAAATTTGGCGTTGAGAACGACCGCCG
CATAGAGAGAACGCTCGAAGTGTTTGACAAAGATGCCTTTGCATATAAAG
CATCCAAAGCATACCAAAGAAAGAGGGATGAGCTGAAATCCCGATTGCTT
TCTGACTCATATGCTTTGTTTGCGAAACAGATTCTCAAAGTTCGAGAGAA
CTCTTATCAGTTCTTCCGTGGAAAGCTTGCAAGAATCAGAATCACAGACA
AGGTGGAAAAACATGTCAAAGGAGCCGTCAATGAAGCCGAAAGATACTTT
GTCGAGCATGGAGAGGCCCTGCGTTCCAAGCTAGGCAGTTGGCGTTTCGA
CAATGAGCGTGAAGAACTTGTCAACCATATGCGAGATGATGCCACGGAGA
GACTGCAACTGGCTCGATTGCAGGGGAACTATGTCCCGTCTATTCGGGCG
CCGATTGCGTTTGCATTTCATACACTTTTGTTAGCGCCTTTCGGACAAGA
TTCTCGCGCGCAAGTGCCCTACGCCGACGAAATGAAGCAGACGTATGATC
CAGATAAGGCTAAGCAAGCCTTTATTATGCGCGTCAGACCTTTCCAGAGG
AGCGACGCCATTTCTTTGAAGGACTCTGACGAACTCCCCTCAAGCGCTGT
TGACGTACTTGCTCCGCTCTTTGAGGATGATGCGACAACTAAAGGCTCTT
GA