Gvermi6716.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6716.t1
Unique NameGvermi6716.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2082010..2082977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6716Gvermi6716Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2082010..2082977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6716.t1Gvermi6716.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2082010..2082977 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6716.t1.start1Gvermi6716.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2082010..2082012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6716.t1.CDS1Gvermi6716.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2082010..2082087 +
Gvermi6716.t1.CDS2Gvermi6716.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2082174..2082823 +
Gvermi6716.t1.CDS3Gvermi6716.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2082932..2082977 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6716.t1.exon1Gvermi6716.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2082010..2082087 +
Gvermi6716.t1.exon2Gvermi6716.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2082174..2082823 +
Gvermi6716.t1.exon3Gvermi6716.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2082932..2082977 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6716.t1.intron1Gvermi6716.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2082088..2082173 +
Gvermi6716.t1.intron2Gvermi6716.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2082824..2082931 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6716.t1.stop1Gvermi6716.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2082975..2082977 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6716.t1 ID=Gvermi6716.t1|Name=Gvermi6716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=258bp
MWAGNRANRASALVCALPRYPASSRLVAARVDTEHSTGMGKFALTGRYAS
RNDSFGIDATYAIDDANTVYATYGVTDEKLLALGVETGFTAFSRHGTVDL
TYNPPRDAAVLKAAVRQGKFRVSALLSFDKFKKDHVKNHAESYELEAKIS
STENLKIAFNGKSRAAKIKLSHRLDAKNKLDAEYHHLVGGSKAIVFTLKH
VYSKAHTFALGFNYGANKCKAEWDCRTDNGPWTITTSFPFNASPLSGDLS
IKRRFDF*
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spliced messenger RNA

>Gvermi6716.t1 ID=Gvermi6716.t1|Name=Gvermi6716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2082010..2082977+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGCTGGAAATCGCGCGAATCGCGCCTCTGCGCTTGTGTGCGCGCT
GCCGAGATACCCGGCCTCCTCGCGTCTGGTGGCAGCTCGAGTGGATACCG
AGCATTCCACGGGAATGGGCAAATTTGCCCTAACCGGTCGCTACGCATCC
AGGAATGACTCGTTTGGCATTGATGCCACCTACGCCATAGACGACGCCAA
TACTGTCTACGCCACATATGGCGTCACCGATGAGAAACTTCTCGCCCTCG
GCGTTGAGACCGGCTTCACGGCCTTCTCGCGTCACGGGACAGTGGATCTT
ACTTACAATCCGCCGCGAGATGCAGCCGTGTTGAAGGCCGCCGTGCGCCA
AGGAAAGTTCCGAGTTTCCGCGCTTCTCTCCTTTGATAAATTCAAGAAGG
ACCACGTCAAGAATCACGCAGAGAGTTACGAATTAGAAGCTAAGATCAGC
AGCACTGAAAACCTTAAGATTGCTTTCAACGGAAAGTCTCGCGCCGCTAA
GATCAAGTTGTCTCATAGGCTCGATGCGAAGAATAAGCTGGATGCCGAGT
ATCACCACCTTGTGGGCGGTTCTAAGGCCATTGTCTTTACGTTGAAGCAT
GTCTATTCCAAGGCGCATACGTTTGCGCTTGGCTTCAATTATGGCGCGAA
CAAGTGCAAGGCTGAGTGGGATTGCAGGACCGACAATGGTCCATGGACCA
TCACGACCAGCTTCCCCTTTAATGCAAGTCCATTATCTGGAGACCTGTCC
ATCAAACGTCGATTTGATTTCTAG
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protein sequence of Gvermi6716.t1

>Gvermi6716.t1 ID=Gvermi6716.t1|Name=Gvermi6716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MWAGNRANRASALVCALPRYPASSRLVAARVDTEHSTGMGKFALTGRYAS
RNDSFGIDATYAIDDANTVYATYGVTDEKLLALGVETGFTAFSRHGTVDL
TYNPPRDAAVLKAAVRQGKFRVSALLSFDKFKKDHVKNHAESYELEAKIS
STENLKIAFNGKSRAAKIKLSHRLDAKNKLDAEYHHLVGGSKAIVFTLKH
VYSKAHTFALGFNYGANKCKAEWDCRTDNGPWTITTSFPFNASPLSGDLS
IKRRFDF*
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mRNA from alignment at ScGOVlb_88:2082010..2082977+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6716.t1 ID=Gvermi6716.t1|Name=Gvermi6716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=968bp|location=Sequence derived from alignment at ScGOVlb_88:2082010..2082977+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGCTGGAAATCGCGCGAATCGCGCCTCTGCGCTTGTGTGCGCGCT
GCCGAGATACCCGGCCTCCTCGCGTCTGGTATGCCTTTGATCCGATTTTC
CTCTACGCTCCTCTTTTCGTCGCATGCTTTTTCTGACATCGAGCTTTCTC
TCTTTGCGATCCAGGTGGCAGCTCGAGTGGATACCGAGCATTCCACGGGA
ATGGGCAAATTTGCCCTAACCGGTCGCTACGCATCCAGGAATGACTCGTT
TGGCATTGATGCCACCTACGCCATAGACGACGCCAATACTGTCTACGCCA
CATATGGCGTCACCGATGAGAAACTTCTCGCCCTCGGCGTTGAGACCGGC
TTCACGGCCTTCTCGCGTCACGGGACAGTGGATCTTACTTACAATCCGCC
GCGAGATGCAGCCGTGTTGAAGGCCGCCGTGCGCCAAGGAAAGTTCCGAG
TTTCCGCGCTTCTCTCCTTTGATAAATTCAAGAAGGACCACGTCAAGAAT
CACGCAGAGAGTTACGAATTAGAAGCTAAGATCAGCAGCACTGAAAACCT
TAAGATTGCTTTCAACGGAAAGTCTCGCGCCGCTAAGATCAAGTTGTCTC
ATAGGCTCGATGCGAAGAATAAGCTGGATGCCGAGTATCACCACCTTGTG
GGCGGTTCTAAGGCCATTGTCTTTACGTTGAAGCATGTCTATTCCAAGGC
GCATACGTTTGCGCTTGGCTTCAATTATGGCGCGAACAAGTGCAAGGCTG
AGTGGGATTGCAGGACCGACAATGGTCCATGGACCATCACGACCAGCTTC
CCCTTTAATGCAAGGTAAGTTGCAATGCCACATGTTCACATTTGATCAGA
AGCTTTTCGCACGTCTTTGTAGAATTTGCTGACGTATTCTCATTTCTAAC
TGTTTTTTAAACTGCCTCGCAGTCCATTATCTGGAGACCTGTCCATCAAA
CGTCGATTTGATTTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2082010..2082977+

>Gvermi6716.t1 ID=Gvermi6716.t1|Name=Gvermi6716.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2082010..2082977+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGCTGGAAATCGCGCGAATCGCGCCTCTGCGCTTGTGTGCGCGCT
GCCGAGATACCCGGCCTCCTCGCGTCTGGTGGCAGCTCGAGTGGATACCG
AGCATTCCACGGGAATGGGCAAATTTGCCCTAACCGGTCGCTACGCATCC
AGGAATGACTCGTTTGGCATTGATGCCACCTACGCCATAGACGACGCCAA
TACTGTCTACGCCACATATGGCGTCACCGATGAGAAACTTCTCGCCCTCG
GCGTTGAGACCGGCTTCACGGCCTTCTCGCGTCACGGGACAGTGGATCTT
ACTTACAATCCGCCGCGAGATGCAGCCGTGTTGAAGGCCGCCGTGCGCCA
AGGAAAGTTCCGAGTTTCCGCGCTTCTCTCCTTTGATAAATTCAAGAAGG
ACCACGTCAAGAATCACGCAGAGAGTTACGAATTAGAAGCTAAGATCAGC
AGCACTGAAAACCTTAAGATTGCTTTCAACGGAAAGTCTCGCGCCGCTAA
GATCAAGTTGTCTCATAGGCTCGATGCGAAGAATAAGCTGGATGCCGAGT
ATCACCACCTTGTGGGCGGTTCTAAGGCCATTGTCTTTACGTTGAAGCAT
GTCTATTCCAAGGCGCATACGTTTGCGCTTGGCTTCAATTATGGCGCGAA
CAAGTGCAAGGCTGAGTGGGATTGCAGGACCGACAATGGTCCATGGACCA
TCACGACCAGCTTCCCCTTTAATGCAAGTCCATTATCTGGAGACCTGTCC
ATCAAACGTCGATTTGATTTCTAG
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