Gvermi6713.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6713.t1
Unique Name	Gvermi6713.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2073826..2075019 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3075.A0A087SQM1
Preferred name	CNX5
PFAMs	Rhodanese,ThiF
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC00043
KEGG ko	ko:K11996
KEGG Reaction	R07459,R07461
KEGG Pathway	ko04122,map04122
Evalue	1.57e-108
EggNOG OGs	COG0476@1\|root,KOG2017@2759\|Eukaryota,37N13@33090\|Viridiplantae,34HM9@3041\|Chlorophyta
EC	2.7.7.80,2.8.1.11
Description	Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor
COG category	H
BRITE	ko00000,ko00001,ko01000,ko03016,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6713	Gvermi6713	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2073826..2075019 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6713.t1.start1	Gvermi6713.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2073826..2073828 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6713.t1.CDS1	Gvermi6713.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2073826..2075019 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6713.t1.exon1	Gvermi6713.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2073826..2075019 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6713.t1.stop1	Gvermi6713.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2075017..2075019 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6713.t1	Gvermi6713.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2073826..2075019 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2073826..2075019+
coding sequence from alignment at ScGOVlb_88:2073826..2075019+

mRNA sequence

>Gvermi6713.t1 ID=Gvermi6713.t1|Name=Gvermi6713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=398bp
MSGSGDESLSANEIERYSRQLLMTQFGLAGQKKLRNARVFIVGLGGLGCP
AALFLAGAGVGTLGLVDRPHDVVETSNLHRQVAHSEAKVGTNKVHSAEAA
IRGLNSNIAIEKHESIVPENAVHLVSCYDLVLDCTDNVASRYLVSDACAT
SRTPLLSGSAIGTDGQLTFYCKTQESPCYRCIFPRPPPPSCVGSCDSAGV
LGPVPGVIGTLQALEAIKFLSCMKQADDLDRKMLLFDGLLCSFRTVKLRS
RVSSCATCGESPRVQVANFNYEQFAKGGMEVEALIPSIPDRYRITPKDLS
YLRKTSSSYKLVDVRPSHEFELCHLEEAENRPLASLESSDVKDIADGGLR
IVLLCRRGNSSRKALKLFLDAGTMNVCDVIGGLQAWHKEIDKEFPFY*

spliced messenger RNA

>Gvermi6713.t1 ID=Gvermi6713.t1|Name=Gvermi6713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at ScGOVlb_88:2073826..2075019+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGGGTCTGGAGACGAGTCTTTAAGCGCAAACGAAATCGAACGTTA
CAGCAGACAGCTATTGATGACCCAGTTTGGCCTAGCTGGTCAAAAAAAGC
TAAGGAATGCTCGTGTTTTCATCGTAGGGCTTGGTGGCTTGGGTTGTCCA
GCTGCTCTATTCCTTGCTGGTGCTGGAGTTGGAACTCTAGGTCTTGTTGA
CCGGCCACATGACGTTGTTGAAACGAGTAATTTGCATCGCCAAGTTGCGC
ATTCCGAAGCCAAGGTGGGAACGAATAAAGTTCACTCTGCTGAGGCTGCT
ATAAGGGGCTTGAATTCAAATATTGCTATTGAGAAACATGAAAGCATTGT
CCCTGAGAATGCCGTTCATTTGGTATCTTGTTATGATCTTGTTTTGGACT
GCACTGATAATGTGGCTTCTCGATATCTCGTAAGTGATGCATGTGCGACA
AGTCGAACACCGTTGCTGTCTGGATCTGCGATCGGCACAGATGGACAGTT
GACTTTTTATTGCAAGACGCAGGAATCTCCATGCTATAGATGCATCTTCC
CACGTCCACCTCCCCCTTCTTGTGTTGGCAGTTGTGATTCTGCTGGGGTG
CTTGGCCCTGTTCCCGGTGTCATCGGTACATTGCAAGCATTGGAAGCAAT
AAAGTTCTTAAGCTGTATGAAGCAAGCAGACGACTTGGATCGTAAAATGT
TGTTGTTTGATGGTTTGTTATGTAGTTTCAGGACCGTCAAGCTAAGGTCT
CGTGTGAGCAGCTGTGCCACATGTGGCGAATCGCCTCGGGTGCAGGTGGC
AAATTTCAACTACGAACAGTTTGCGAAGGGGGGGATGGAAGTTGAAGCAT
TGATTCCTTCTATTCCTGACCGATACCGAATAACACCAAAGGACCTATCT
TATTTGAGGAAAACATCCTCTTCCTACAAGCTTGTTGACGTGCGCCCAAG
TCATGAATTTGAGTTATGTCATCTTGAAGAAGCAGAAAACAGACCACTGG
CGTCTTTGGAGTCATCAGACGTAAAAGACATAGCTGACGGCGGTTTGCGA
ATTGTTTTGCTTTGCCGACGAGGTAATTCGAGCCGCAAGGCTTTGAAATT
ATTTCTTGATGCGGGAACGATGAACGTGTGTGATGTGATCGGGGGGCTGC
AGGCTTGGCATAAAGAAATTGACAAGGAATTCCCGTTCTACTGA

protein sequence of Gvermi6713.t1

>Gvermi6713.t1 ID=Gvermi6713.t1|Name=Gvermi6713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=398bp
MSGSGDESLSANEIERYSRQLLMTQFGLAGQKKLRNARVFIVGLGGLGCP
AALFLAGAGVGTLGLVDRPHDVVETSNLHRQVAHSEAKVGTNKVHSAEAA
IRGLNSNIAIEKHESIVPENAVHLVSCYDLVLDCTDNVASRYLVSDACAT
SRTPLLSGSAIGTDGQLTFYCKTQESPCYRCIFPRPPPPSCVGSCDSAGV
LGPVPGVIGTLQALEAIKFLSCMKQADDLDRKMLLFDGLLCSFRTVKLRS
RVSSCATCGESPRVQVANFNYEQFAKGGMEVEALIPSIPDRYRITPKDLS
YLRKTSSSYKLVDVRPSHEFELCHLEEAENRPLASLESSDVKDIADGGLR
IVLLCRRGNSSRKALKLFLDAGTMNVCDVIGGLQAWHKEIDKEFPFY*

mRNA from alignment at ScGOVlb_88:2073826..2075019+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6713.t1 ID=Gvermi6713.t1|Name=Gvermi6713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at ScGOVlb_88:2073826..2075019+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGGGTCTGGAGACGAGTCTTTAAGCGCAAACGAAATCGAACGTTA
CAGCAGACAGCTATTGATGACCCAGTTTGGCCTAGCTGGTCAAAAAAAGC
TAAGGAATGCTCGTGTTTTCATCGTAGGGCTTGGTGGCTTGGGTTGTCCA
GCTGCTCTATTCCTTGCTGGTGCTGGAGTTGGAACTCTAGGTCTTGTTGA
CCGGCCACATGACGTTGTTGAAACGAGTAATTTGCATCGCCAAGTTGCGC
ATTCCGAAGCCAAGGTGGGAACGAATAAAGTTCACTCTGCTGAGGCTGCT
ATAAGGGGCTTGAATTCAAATATTGCTATTGAGAAACATGAAAGCATTGT
CCCTGAGAATGCCGTTCATTTGGTATCTTGTTATGATCTTGTTTTGGACT
GCACTGATAATGTGGCTTCTCGATATCTCGTAAGTGATGCATGTGCGACA
AGTCGAACACCGTTGCTGTCTGGATCTGCGATCGGCACAGATGGACAGTT
GACTTTTTATTGCAAGACGCAGGAATCTCCATGCTATAGATGCATCTTCC
CACGTCCACCTCCCCCTTCTTGTGTTGGCAGTTGTGATTCTGCTGGGGTG
CTTGGCCCTGTTCCCGGTGTCATCGGTACATTGCAAGCATTGGAAGCAAT
AAAGTTCTTAAGCTGTATGAAGCAAGCAGACGACTTGGATCGTAAAATGT
TGTTGTTTGATGGTTTGTTATGTAGTTTCAGGACCGTCAAGCTAAGGTCT
CGTGTGAGCAGCTGTGCCACATGTGGCGAATCGCCTCGGGTGCAGGTGGC
AAATTTCAACTACGAACAGTTTGCGAAGGGGGGGATGGAAGTTGAAGCAT
TGATTCCTTCTATTCCTGACCGATACCGAATAACACCAAAGGACCTATCT
TATTTGAGGAAAACATCCTCTTCCTACAAGCTTGTTGACGTGCGCCCAAG
TCATGAATTTGAGTTATGTCATCTTGAAGAAGCAGAAAACAGACCACTGG
CGTCTTTGGAGTCATCAGACGTAAAAGACATAGCTGACGGCGGTTTGCGA
ATTGTTTTGCTTTGCCGACGAGGTAATTCGAGCCGCAAGGCTTTGAAATT
ATTTCTTGATGCGGGAACGATGAACGTGTGTGATGTGATCGGGGGGCTGC
AGGCTTGGCATAAAGAAATTGACAAGGAATTCCCGTTCTACTGA

Coding sequence (CDS) from alignment at ScGOVlb_88:2073826..2075019+

>Gvermi6713.t1 ID=Gvermi6713.t1|Name=Gvermi6713.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1194bp|location=Sequence derived from alignment at ScGOVlb_88:2073826..2075019+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGGGTCTGGAGACGAGTCTTTAAGCGCAAACGAAATCGAACGTTA
CAGCAGACAGCTATTGATGACCCAGTTTGGCCTAGCTGGTCAAAAAAAGC
TAAGGAATGCTCGTGTTTTCATCGTAGGGCTTGGTGGCTTGGGTTGTCCA
GCTGCTCTATTCCTTGCTGGTGCTGGAGTTGGAACTCTAGGTCTTGTTGA
CCGGCCACATGACGTTGTTGAAACGAGTAATTTGCATCGCCAAGTTGCGC
ATTCCGAAGCCAAGGTGGGAACGAATAAAGTTCACTCTGCTGAGGCTGCT
ATAAGGGGCTTGAATTCAAATATTGCTATTGAGAAACATGAAAGCATTGT
CCCTGAGAATGCCGTTCATTTGGTATCTTGTTATGATCTTGTTTTGGACT
GCACTGATAATGTGGCTTCTCGATATCTCGTAAGTGATGCATGTGCGACA
AGTCGAACACCGTTGCTGTCTGGATCTGCGATCGGCACAGATGGACAGTT
GACTTTTTATTGCAAGACGCAGGAATCTCCATGCTATAGATGCATCTTCC
CACGTCCACCTCCCCCTTCTTGTGTTGGCAGTTGTGATTCTGCTGGGGTG
CTTGGCCCTGTTCCCGGTGTCATCGGTACATTGCAAGCATTGGAAGCAAT
AAAGTTCTTAAGCTGTATGAAGCAAGCAGACGACTTGGATCGTAAAATGT
TGTTGTTTGATGGTTTGTTATGTAGTTTCAGGACCGTCAAGCTAAGGTCT
CGTGTGAGCAGCTGTGCCACATGTGGCGAATCGCCTCGGGTGCAGGTGGC
AAATTTCAACTACGAACAGTTTGCGAAGGGGGGGATGGAAGTTGAAGCAT
TGATTCCTTCTATTCCTGACCGATACCGAATAACACCAAAGGACCTATCT
TATTTGAGGAAAACATCCTCTTCCTACAAGCTTGTTGACGTGCGCCCAAG
TCATGAATTTGAGTTATGTCATCTTGAAGAAGCAGAAAACAGACCACTGG
CGTCTTTGGAGTCATCAGACGTAAAAGACATAGCTGACGGCGGTTTGCGA
ATTGTTTTGCTTTGCCGACGAGGTAATTCGAGCCGCAAGGCTTTGAAATT
ATTTCTTGATGCGGGAACGATGAACGTGTGTGATGTGATCGGGGGGCTGC
AGGCTTGGCATAAAGAAATTGACAAGGAATTCCCGTTCTACTGA