Gvermi6684.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6684.t1
Unique NameGvermi6684.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1930289..1931488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10090.ENSMUSP00000123765
Preferred nameSUCLA2
PFAMsATP-grasp_2,Ligase_CoA
Max annot lvl33208|Metazoa
KEGG rclassRC00004,RC00014
KEGG koko:K01900
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
GOsGO:0000003,GO:0000151,GO:0003006,GO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006104,GO:0006105,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006778,GO:0006779,GO:0006780,GO:0006781,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009361,GO:0009653,GO:0009893,GO:0009987,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0015980,GO:0016053,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030162,GO:0031323,GO:0031325,GO:0031461,GO:0031463,GO:0031974,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033013,GO:0033014,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042709,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043436,GO:0043603,GO:0043648,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045239,GO:0045333,GO:0045862,GO:0046394,GO:0046483,GO:0046502,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051186,GO:0051188,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0072350,GO:0072521,GO:0080090,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2001056
Evalue1.35e-157
EggNOG OGsCOG0045@1|root,KOG2799@2759|Eukaryota,38D0K@33154|Opisthokonta,3BF6T@33208|Metazoa,3CUQP@33213|Bilateria,48508@7711|Chordata,4939H@7742|Vertebrata,3J7HX@40674|Mammalia,35J18@314146|Euarchontoglires,4Q1C0@9989|Rodentia
EC6.2.1.4,6.2.1.5
DescriptionATP-specific succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6684Gvermi6684Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1930289..1931488 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6684.t1.stop1Gvermi6684.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1930289..1930291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6684.t1.CDS1Gvermi6684.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1930289..1931488 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6684.t1.exon1Gvermi6684.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1930289..1931488 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6684.t1.start1Gvermi6684.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1931486..1931488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6684.t1Gvermi6684.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1930289..1931488 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6684.t1 ID=Gvermi6684.t1|Name=Gvermi6684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=400bp
MRDCEINVPKGFDVDSREAALSAAESLAGKDIVVKAQVLAGGRGLGTFKN
GFKGGVHICYDAEKAADVAGSMIGQYLVTKQTGEQGRLCSKALVTERVYL
RREMYFAITYDRESQGPVIIASRVGGTSIEDIAASDPSAITKIPVDMGEG
LTNEGAETCAKALGFTGEAALKTAADQVHKLYKLFIDKDATLVEVNPIAE
TPEGGVICIDAKINFDDNAEFRHKDLFDMRDTSQEDAREVRAHEFDLNYI
GLDGNIGCLVNGAGLAMATMDIIKLHGGDPANFLDVGGSATETQVTEAFK
ILNDDPKVEAILVNIFGGIMRCDVIAQGIINAAKTIDMRIPVVVRLQGNK
VDEAKALIGASGLELVASDDLDQAAKKACTLAEIVRLANSVDVNVAFHT*
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spliced messenger RNA

>Gvermi6684.t1 ID=Gvermi6684.t1|Name=Gvermi6684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at ScGOVlb_88:1930289..1931488- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGACTGCGAGATCAACGTGCCGAAGGGCTTTGACGTCGACTCGCG
CGAAGCGGCACTGTCGGCCGCCGAGTCTCTGGCCGGCAAAGACATTGTTG
TCAAGGCGCAAGTGCTGGCGGGCGGAAGAGGCCTCGGCACTTTTAAGAAT
GGATTCAAGGGCGGTGTGCACATCTGCTACGACGCCGAGAAGGCGGCGGA
TGTGGCCGGAAGCATGATTGGTCAGTACCTTGTCACCAAGCAGACTGGAG
AACAAGGCAGGCTGTGTTCGAAGGCACTGGTGACCGAACGGGTTTACTTG
AGGAGGGAAATGTACTTTGCGATCACGTACGATAGAGAAAGCCAGGGCCC
GGTCATCATCGCAAGCCGTGTCGGAGGAACGTCCATCGAAGACATTGCAG
CCTCCGATCCGTCGGCCATAACAAAGATTCCCGTGGACATGGGCGAAGGG
CTGACCAACGAAGGCGCCGAAACGTGCGCAAAGGCCCTGGGGTTCACGGG
AGAAGCGGCGCTAAAAACGGCGGCGGATCAGGTGCACAAATTGTACAAGC
TTTTCATTGACAAGGACGCCACGCTGGTGGAGGTGAACCCCATTGCCGAG
ACGCCCGAGGGCGGCGTGATCTGCATCGACGCCAAGATCAATTTTGACGA
CAACGCGGAGTTTCGACACAAGGATTTGTTCGACATGCGCGACACGAGCC
AGGAAGACGCGCGCGAAGTGCGGGCGCACGAGTTCGACCTCAACTACATC
GGGTTGGACGGCAATATTGGGTGCTTGGTAAACGGGGCTGGGCTGGCAAT
GGCAACCATGGACATCATCAAGCTGCACGGGGGAGATCCTGCCAACTTTT
TAGACGTTGGAGGGAGCGCAACTGAAACTCAGGTAACGGAGGCGTTTAAG
ATTTTGAACGACGATCCTAAGGTGGAAGCTATACTTGTGAACATTTTTGG
AGGAATCATGAGGTGTGACGTGATCGCACAGGGTATCATTAACGCAGCTA
AAACTATCGACATGCGCATTCCGGTGGTGGTGAGGCTTCAAGGCAACAAG
GTGGACGAGGCCAAGGCGTTGATAGGGGCTAGCGGTCTCGAGCTGGTGGC
GTCGGACGACCTCGACCAAGCGGCCAAGAAGGCGTGCACGCTGGCCGAAA
TCGTGAGGCTGGCCAACTCTGTAGACGTGAACGTGGCGTTCCACACGTAA
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protein sequence of Gvermi6684.t1

>Gvermi6684.t1 ID=Gvermi6684.t1|Name=Gvermi6684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=400bp
MRDCEINVPKGFDVDSREAALSAAESLAGKDIVVKAQVLAGGRGLGTFKN
GFKGGVHICYDAEKAADVAGSMIGQYLVTKQTGEQGRLCSKALVTERVYL
RREMYFAITYDRESQGPVIIASRVGGTSIEDIAASDPSAITKIPVDMGEG
LTNEGAETCAKALGFTGEAALKTAADQVHKLYKLFIDKDATLVEVNPIAE
TPEGGVICIDAKINFDDNAEFRHKDLFDMRDTSQEDAREVRAHEFDLNYI
GLDGNIGCLVNGAGLAMATMDIIKLHGGDPANFLDVGGSATETQVTEAFK
ILNDDPKVEAILVNIFGGIMRCDVIAQGIINAAKTIDMRIPVVVRLQGNK
VDEAKALIGASGLELVASDDLDQAAKKACTLAEIVRLANSVDVNVAFHT*
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mRNA from alignment at ScGOVlb_88:1930289..1931488-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6684.t1 ID=Gvermi6684.t1|Name=Gvermi6684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at ScGOVlb_88:1930289..1931488- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGACTGCGAGATCAACGTGCCGAAGGGCTTTGACGTCGACTCGCG
CGAAGCGGCACTGTCGGCCGCCGAGTCTCTGGCCGGCAAAGACATTGTTG
TCAAGGCGCAAGTGCTGGCGGGCGGAAGAGGCCTCGGCACTTTTAAGAAT
GGATTCAAGGGCGGTGTGCACATCTGCTACGACGCCGAGAAGGCGGCGGA
TGTGGCCGGAAGCATGATTGGTCAGTACCTTGTCACCAAGCAGACTGGAG
AACAAGGCAGGCTGTGTTCGAAGGCACTGGTGACCGAACGGGTTTACTTG
AGGAGGGAAATGTACTTTGCGATCACGTACGATAGAGAAAGCCAGGGCCC
GGTCATCATCGCAAGCCGTGTCGGAGGAACGTCCATCGAAGACATTGCAG
CCTCCGATCCGTCGGCCATAACAAAGATTCCCGTGGACATGGGCGAAGGG
CTGACCAACGAAGGCGCCGAAACGTGCGCAAAGGCCCTGGGGTTCACGGG
AGAAGCGGCGCTAAAAACGGCGGCGGATCAGGTGCACAAATTGTACAAGC
TTTTCATTGACAAGGACGCCACGCTGGTGGAGGTGAACCCCATTGCCGAG
ACGCCCGAGGGCGGCGTGATCTGCATCGACGCCAAGATCAATTTTGACGA
CAACGCGGAGTTTCGACACAAGGATTTGTTCGACATGCGCGACACGAGCC
AGGAAGACGCGCGCGAAGTGCGGGCGCACGAGTTCGACCTCAACTACATC
GGGTTGGACGGCAATATTGGGTGCTTGGTAAACGGGGCTGGGCTGGCAAT
GGCAACCATGGACATCATCAAGCTGCACGGGGGAGATCCTGCCAACTTTT
TAGACGTTGGAGGGAGCGCAACTGAAACTCAGGTAACGGAGGCGTTTAAG
ATTTTGAACGACGATCCTAAGGTGGAAGCTATACTTGTGAACATTTTTGG
AGGAATCATGAGGTGTGACGTGATCGCACAGGGTATCATTAACGCAGCTA
AAACTATCGACATGCGCATTCCGGTGGTGGTGAGGCTTCAAGGCAACAAG
GTGGACGAGGCCAAGGCGTTGATAGGGGCTAGCGGTCTCGAGCTGGTGGC
GTCGGACGACCTCGACCAAGCGGCCAAGAAGGCGTGCACGCTGGCCGAAA
TCGTGAGGCTGGCCAACTCTGTAGACGTGAACGTGGCGTTCCACACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1930289..1931488-

>Gvermi6684.t1 ID=Gvermi6684.t1|Name=Gvermi6684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1200bp|location=Sequence derived from alignment at ScGOVlb_88:1930289..1931488- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGACTGCGAGATCAACGTGCCGAAGGGCTTTGACGTCGACTCGCG
CGAAGCGGCACTGTCGGCCGCCGAGTCTCTGGCCGGCAAAGACATTGTTG
TCAAGGCGCAAGTGCTGGCGGGCGGAAGAGGCCTCGGCACTTTTAAGAAT
GGATTCAAGGGCGGTGTGCACATCTGCTACGACGCCGAGAAGGCGGCGGA
TGTGGCCGGAAGCATGATTGGTCAGTACCTTGTCACCAAGCAGACTGGAG
AACAAGGCAGGCTGTGTTCGAAGGCACTGGTGACCGAACGGGTTTACTTG
AGGAGGGAAATGTACTTTGCGATCACGTACGATAGAGAAAGCCAGGGCCC
GGTCATCATCGCAAGCCGTGTCGGAGGAACGTCCATCGAAGACATTGCAG
CCTCCGATCCGTCGGCCATAACAAAGATTCCCGTGGACATGGGCGAAGGG
CTGACCAACGAAGGCGCCGAAACGTGCGCAAAGGCCCTGGGGTTCACGGG
AGAAGCGGCGCTAAAAACGGCGGCGGATCAGGTGCACAAATTGTACAAGC
TTTTCATTGACAAGGACGCCACGCTGGTGGAGGTGAACCCCATTGCCGAG
ACGCCCGAGGGCGGCGTGATCTGCATCGACGCCAAGATCAATTTTGACGA
CAACGCGGAGTTTCGACACAAGGATTTGTTCGACATGCGCGACACGAGCC
AGGAAGACGCGCGCGAAGTGCGGGCGCACGAGTTCGACCTCAACTACATC
GGGTTGGACGGCAATATTGGGTGCTTGGTAAACGGGGCTGGGCTGGCAAT
GGCAACCATGGACATCATCAAGCTGCACGGGGGAGATCCTGCCAACTTTT
TAGACGTTGGAGGGAGCGCAACTGAAACTCAGGTAACGGAGGCGTTTAAG
ATTTTGAACGACGATCCTAAGGTGGAAGCTATACTTGTGAACATTTTTGG
AGGAATCATGAGGTGTGACGTGATCGCACAGGGTATCATTAACGCAGCTA
AAACTATCGACATGCGCATTCCGGTGGTGGTGAGGCTTCAAGGCAACAAG
GTGGACGAGGCCAAGGCGTTGATAGGGGCTAGCGGTCTCGAGCTGGTGGC
GTCGGACGACCTCGACCAAGCGGCCAAGAAGGCGTGCACGCTGGCCGAAA
TCGTGAGGCTGGCCAACTCTGTAGACGTGAACGTGGCGTTCCACACGTAA
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