Gvermi6682.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6682.t1
Unique NameGvermi6682.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1922543..1923889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704309.1
Preferred namePDHA1
PFAMsE1_dh
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161,ko:K05694
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04520,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04520,map04922,map05230
KEGG ModuleM00307
GOsGO:0003674,GO:0003824,GO:0004738,GO:0004739,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006091,GO:0006099,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007124,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009060,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009295,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016049,GO:0016491,GO:0016620,GO:0016624,GO:0016903,GO:0016999,GO:0017144,GO:0018130,GO:0019362,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030447,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034603,GO:0034604,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0040007,GO:0042221,GO:0042645,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0045333,GO:0046390,GO:0046483,GO:0046496,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0070783,GO:0071616,GO:0071704,GO:0072350,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0098798,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
Evalue7.75e-157
EggNOG OGsCOG0462@1|root,KOG0225@2759|Eukaryota
EC1.2.4.1,3.1.3.48
Descriptionpyruvate dehydrogenase (acetyl-transferring) activity
COG categoryC
BiGG ReactioniMM904.YER178W,iND750.YER178W
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01009,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6682Gvermi6682Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1922543..1923889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6682.t1Gvermi6682.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1922543..1923889 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6682.t1.start1Gvermi6682.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1922543..1922545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6682.t1.CDS1Gvermi6682.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1922543..1922620 +
Gvermi6682.t1.CDS2Gvermi6682.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1922804..1923889 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6682.t1.exon1Gvermi6682.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1922543..1922620 +
Gvermi6682.t1.exon2Gvermi6682.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1922804..1923889 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6682.t1.intron1Gvermi6682.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 1922621..1922803 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6682.t1.stop1Gvermi6682.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1923887..1923889 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6682.t1 ID=Gvermi6682.t1|Name=Gvermi6682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=388bp
MMRSAAIAARAGLARLAARQRPLSTQPPPSEVVFDITPFATHRIDPPEPK
AVSNADELHQYFGTMYLMRRMEMESDALYTRQMVRGFCHLYNGQEAVAVG
MEAAITYDDCLITAYRNHCQQLARGDSVESILSELTGRVNGCSKGKGGSM
HLYKPQNNYYGGNGIVGAQGPLGAGLAFAQKYNNTGKVAITMFGDGAANQ
GQIFEVINMSALWKLPTVFVCENNRYGMGTSTKRSAKSEEFYTRGDYIPG
IRVDGMDVLCVREGMKFAADYARENGPIYVEMDTYRYKGHSISDQGLGYR
SIDEINVVKASRDPIDRVKARLIEHGWATAKELKAEEKKIRKEVDAAVKV
AETAPHPPMSDLFSDIYVGDAGFVRGTLNSNGNMSMS*
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spliced messenger RNA

>Gvermi6682.t1 ID=Gvermi6682.t1|Name=Gvermi6682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at ScGOVlb_88:1922543..1923889+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGCAGCGCCGCCATCGCCGCGCGCGCCGGCCTCGCGCGCCTGGC
TGCCCGACAGCGCCCCCTCTCCACACAGCCGCCTCCGTCAGAGGTGGTGT
TCGACATCACGCCGTTCGCCACGCACAGGATAGACCCGCCGGAGCCGAAA
GCTGTTTCCAACGCCGACGAGCTTCATCAGTACTTCGGCACAATGTATCT
CATGCGCCGCATGGAAATGGAGTCGGACGCGCTCTACACGCGTCAAATGG
TGCGCGGCTTTTGCCACCTCTACAACGGCCAGGAAGCTGTGGCCGTGGGC
ATGGAGGCTGCCATCACATATGACGACTGCCTCATCACAGCGTACCGCAA
CCATTGCCAACAGCTTGCGCGCGGAGACTCTGTGGAATCCATTCTGTCCG
AACTGACGGGAAGGGTGAATGGGTGCTCGAAAGGAAAAGGGGGTTCCATG
CATTTGTACAAGCCGCAGAACAACTATTACGGCGGAAACGGGATTGTGGG
CGCCCAGGGCCCGCTCGGAGCCGGGCTGGCGTTTGCGCAAAAGTACAACA
ACACCGGAAAGGTGGCCATCACCATGTTTGGTGACGGTGCGGCCAACCAA
GGGCAAATCTTTGAGGTGATCAACATGTCGGCGTTGTGGAAATTGCCCAC
GGTGTTTGTGTGCGAGAACAACCGGTACGGAATGGGGACGTCGACAAAGA
GGAGCGCAAAATCGGAAGAATTCTACACCAGAGGCGACTACATTCCGGGA
ATTCGCGTGGATGGTATGGATGTGCTGTGTGTGCGCGAAGGGATGAAATT
CGCCGCCGACTACGCGCGTGAGAACGGGCCCATCTACGTTGAAATGGACA
CTTACCGCTACAAGGGTCACAGTATTTCTGATCAAGGTCTGGGGTATCGT
TCCATTGACGAGATTAATGTTGTGAAAGCTAGTCGTGATCCCATTGACCG
GGTGAAGGCGCGTCTGATTGAACATGGCTGGGCTACTGCCAAGGAATTGA
AGGCTGAAGAAAAGAAAATCAGAAAGGAAGTTGATGCGGCAGTCAAAGTT
GCCGAAACCGCTCCGCACCCACCGATGTCAGACTTGTTTTCCGATATTTA
TGTCGGGGATGCGGGCTTTGTTCGCGGCACGCTCAACTCGAATGGCAATA
TGTCAATGTCGTAA
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protein sequence of Gvermi6682.t1

>Gvermi6682.t1 ID=Gvermi6682.t1|Name=Gvermi6682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=388bp
MMRSAAIAARAGLARLAARQRPLSTQPPPSEVVFDITPFATHRIDPPEPK
AVSNADELHQYFGTMYLMRRMEMESDALYTRQMVRGFCHLYNGQEAVAVG
MEAAITYDDCLITAYRNHCQQLARGDSVESILSELTGRVNGCSKGKGGSM
HLYKPQNNYYGGNGIVGAQGPLGAGLAFAQKYNNTGKVAITMFGDGAANQ
GQIFEVINMSALWKLPTVFVCENNRYGMGTSTKRSAKSEEFYTRGDYIPG
IRVDGMDVLCVREGMKFAADYARENGPIYVEMDTYRYKGHSISDQGLGYR
SIDEINVVKASRDPIDRVKARLIEHGWATAKELKAEEKKIRKEVDAAVKV
AETAPHPPMSDLFSDIYVGDAGFVRGTLNSNGNMSMS*
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mRNA from alignment at ScGOVlb_88:1922543..1923889+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6682.t1 ID=Gvermi6682.t1|Name=Gvermi6682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at ScGOVlb_88:1922543..1923889+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCGCAGCGCCGCCATCGCCGCGCGCGCCGGCCTCGCGCGCCTGGC
TGCCCGACAGCGCCCCCTCTCCACACAGGTTAGCTACATTCGTCACCTTT
CCGTTTGGGCTCGCCTGTTCCCCTCGGCCGCCACTTGTCCCTCGCCGCCG
CCGCCCGAGCGTGCGGAGCGCGCACCGCCTGTCGAAGCGCCGCCGCAAAC
GCAGCTCACTGACACCCCCCCTCGTCGCGATGCCTCGCCCTCATCGCACC
CTGTGCCACAGCCGCCTCCGTCAGAGGTGGTGTTCGACATCACGCCGTTC
GCCACGCACAGGATAGACCCGCCGGAGCCGAAAGCTGTTTCCAACGCCGA
CGAGCTTCATCAGTACTTCGGCACAATGTATCTCATGCGCCGCATGGAAA
TGGAGTCGGACGCGCTCTACACGCGTCAAATGGTGCGCGGCTTTTGCCAC
CTCTACAACGGCCAGGAAGCTGTGGCCGTGGGCATGGAGGCTGCCATCAC
ATATGACGACTGCCTCATCACAGCGTACCGCAACCATTGCCAACAGCTTG
CGCGCGGAGACTCTGTGGAATCCATTCTGTCCGAACTGACGGGAAGGGTG
AATGGGTGCTCGAAAGGAAAAGGGGGTTCCATGCATTTGTACAAGCCGCA
GAACAACTATTACGGCGGAAACGGGATTGTGGGCGCCCAGGGCCCGCTCG
GAGCCGGGCTGGCGTTTGCGCAAAAGTACAACAACACCGGAAAGGTGGCC
ATCACCATGTTTGGTGACGGTGCGGCCAACCAAGGGCAAATCTTTGAGGT
GATCAACATGTCGGCGTTGTGGAAATTGCCCACGGTGTTTGTGTGCGAGA
ACAACCGGTACGGAATGGGGACGTCGACAAAGAGGAGCGCAAAATCGGAA
GAATTCTACACCAGAGGCGACTACATTCCGGGAATTCGCGTGGATGGTAT
GGATGTGCTGTGTGTGCGCGAAGGGATGAAATTCGCCGCCGACTACGCGC
GTGAGAACGGGCCCATCTACGTTGAAATGGACACTTACCGCTACAAGGGT
CACAGTATTTCTGATCAAGGTCTGGGGTATCGTTCCATTGACGAGATTAA
TGTTGTGAAAGCTAGTCGTGATCCCATTGACCGGGTGAAGGCGCGTCTGA
TTGAACATGGCTGGGCTACTGCCAAGGAATTGAAGGCTGAAGAAAAGAAA
ATCAGAAAGGAAGTTGATGCGGCAGTCAAAGTTGCCGAAACCGCTCCGCA
CCCACCGATGTCAGACTTGTTTTCCGATATTTATGTCGGGGATGCGGGCT
TTGTTCGCGGCACGCTCAACTCGAATGGCAATATGTCAATGTCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1922543..1923889+

>Gvermi6682.t1 ID=Gvermi6682.t1|Name=Gvermi6682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1164bp|location=Sequence derived from alignment at ScGOVlb_88:1922543..1923889+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCGCAGCGCCGCCATCGCCGCGCGCGCCGGCCTCGCGCGCCTGGC
TGCCCGACAGCGCCCCCTCTCCACACAGCCGCCTCCGTCAGAGGTGGTGT
TCGACATCACGCCGTTCGCCACGCACAGGATAGACCCGCCGGAGCCGAAA
GCTGTTTCCAACGCCGACGAGCTTCATCAGTACTTCGGCACAATGTATCT
CATGCGCCGCATGGAAATGGAGTCGGACGCGCTCTACACGCGTCAAATGG
TGCGCGGCTTTTGCCACCTCTACAACGGCCAGGAAGCTGTGGCCGTGGGC
ATGGAGGCTGCCATCACATATGACGACTGCCTCATCACAGCGTACCGCAA
CCATTGCCAACAGCTTGCGCGCGGAGACTCTGTGGAATCCATTCTGTCCG
AACTGACGGGAAGGGTGAATGGGTGCTCGAAAGGAAAAGGGGGTTCCATG
CATTTGTACAAGCCGCAGAACAACTATTACGGCGGAAACGGGATTGTGGG
CGCCCAGGGCCCGCTCGGAGCCGGGCTGGCGTTTGCGCAAAAGTACAACA
ACACCGGAAAGGTGGCCATCACCATGTTTGGTGACGGTGCGGCCAACCAA
GGGCAAATCTTTGAGGTGATCAACATGTCGGCGTTGTGGAAATTGCCCAC
GGTGTTTGTGTGCGAGAACAACCGGTACGGAATGGGGACGTCGACAAAGA
GGAGCGCAAAATCGGAAGAATTCTACACCAGAGGCGACTACATTCCGGGA
ATTCGCGTGGATGGTATGGATGTGCTGTGTGTGCGCGAAGGGATGAAATT
CGCCGCCGACTACGCGCGTGAGAACGGGCCCATCTACGTTGAAATGGACA
CTTACCGCTACAAGGGTCACAGTATTTCTGATCAAGGTCTGGGGTATCGT
TCCATTGACGAGATTAATGTTGTGAAAGCTAGTCGTGATCCCATTGACCG
GGTGAAGGCGCGTCTGATTGAACATGGCTGGGCTACTGCCAAGGAATTGA
AGGCTGAAGAAAAGAAAATCAGAAAGGAAGTTGATGCGGCAGTCAAAGTT
GCCGAAACCGCTCCGCACCCACCGATGTCAGACTTGTTTTCCGATATTTA
TGTCGGGGATGCGGGCTTTGTTCGCGGCACGCTCAACTCGAATGGCAATA
TGTCAATGTCGTAA
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