Gvermi6597.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6597.t1
Unique NameGvermi6597.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1505225..1505638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR04G14660.1
Max annot lvl35493|Streptophyta
Evalue6.42e-07
EggNOG OGs2DZEM@1|root,2S6YZ@2759|Eukaryota,37WV6@33090|Viridiplantae,3GKXS@35493|Streptophyta,3M1IE@4447|Liliopsida,3IJRX@38820|Poales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6597Gvermi6597Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1505225..1505638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6597.t1Gvermi6597.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1505225..1505638 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6597.t1.start1Gvermi6597.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1505225..1505227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6597.t1.CDS1Gvermi6597.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1505225..1505419 +
Gvermi6597.t1.CDS2Gvermi6597.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1505516..1505638 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6597.t1.exon1Gvermi6597.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1505225..1505419 +
Gvermi6597.t1.exon2Gvermi6597.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1505516..1505638 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6597.t1.intron1Gvermi6597.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 1505420..1505515 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6597.t1.stop1Gvermi6597.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1505636..1505638 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6597.t1 ID=Gvermi6597.t1|Name=Gvermi6597.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=106bp
MGPGGLFARIAQWLASEVIVKGLANNAAFQRFAVRSSQQAKELSKSAADA
AKSLSESESFVQMKKESEAIRNQAKDFANALREEIEESVRRAAQGKDSQP
PVKRK*
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spliced messenger RNA

>Gvermi6597.t1 ID=Gvermi6597.t1|Name=Gvermi6597.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=318bp|location=Sequence derived from alignment at ScGOVlb_88:1505225..1505638+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACCGGGGGGCTTGTTCGCCAGAATTGCTCAATGGCTGGCTAGTGA
AGTAATCGTCAAAGGGCTGGCTAACAACGCTGCCTTCCAGCGTTTTGCCG
TTCGCTCCTCTCAACAAGCCAAGGAGTTATCGAAATCAGCTGCAGACGCA
GCAAAGAGTTTATCAGAGAGTGAGAGTTTTGTTCAAATGAAAAAGGAGTC
TGAGGCAATTCGAAATCAAGCCAAAGACTTTGCGAATGCTCTTCGAGAAG
AAATTGAGGAAAGCGTTCGAAGAGCTGCACAAGGAAAGGATTCACAGCCA
CCAGTAAAGCGAAAATGA
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protein sequence of Gvermi6597.t1

>Gvermi6597.t1 ID=Gvermi6597.t1|Name=Gvermi6597.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=106bp
MGPGGLFARIAQWLASEVIVKGLANNAAFQRFAVRSSQQAKELSKSAADA
AKSLSESESFVQMKKESEAIRNQAKDFANALREEIEESVRRAAQGKDSQP
PVKRK*
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mRNA from alignment at ScGOVlb_88:1505225..1505638+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6597.t1 ID=Gvermi6597.t1|Name=Gvermi6597.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_88:1505225..1505638+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGACCGGGGGGCTTGTTCGCCAGAATTGCTCAATGGCTGGCTAGTGA
AGTAATCGTCAAAGGGCTGGCTAACAACGCTGCCTTCCAGCGTTTTGCCG
TTCGCTCCTCTCAACAAGCCAAGGAGTTATCGAAATCAGCTGCAGACGCA
GCAAAGAGTTTATCAGAGAGTGAGAGTTTTGTTCAAATGAAAAAGGTAAG
GTTGTTGCTTCTCTAAAGCGTTCGCGGTCCGGTTACGTGATTTTGTGAAG
AACTGACACAACTATTTATCCTACGGAGAACATCAATTTAGGAGTCTGAG
GCAATTCGAAATCAAGCCAAAGACTTTGCGAATGCTCTTCGAGAAGAAAT
TGAGGAAAGCGTTCGAAGAGCTGCACAAGGAAAGGATTCACAGCCACCAG
TAAAGCGAAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1505225..1505638+

>Gvermi6597.t1 ID=Gvermi6597.t1|Name=Gvermi6597.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=318bp|location=Sequence derived from alignment at ScGOVlb_88:1505225..1505638+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGACCGGGGGGCTTGTTCGCCAGAATTGCTCAATGGCTGGCTAGTGA
AGTAATCGTCAAAGGGCTGGCTAACAACGCTGCCTTCCAGCGTTTTGCCG
TTCGCTCCTCTCAACAAGCCAAGGAGTTATCGAAATCAGCTGCAGACGCA
GCAAAGAGTTTATCAGAGAGTGAGAGTTTTGTTCAAATGAAAAAGGAGTC
TGAGGCAATTCGAAATCAAGCCAAAGACTTTGCGAATGCTCTTCGAGAAG
AAATTGAGGAAAGCGTTCGAAGAGCTGCACAAGGAAAGGATTCACAGCCA
CCAGTAAAGCGAAAATGA
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