Gvermi6562.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6562.t1
Unique Name	Gvermi6562.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1338284..1339450 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX40024
PFAMs	S1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02945
KEGG Pathway	ko03010,map03010
KEGG Module	M00178
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0016020,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0097159,GO:1901363
Evalue	7.87e-122
EggNOG OGs	COG0539@1\|root,2QUY8@2759\|Eukaryota
Description	RNA binding
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6562	Gvermi6562	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 1338284..1339450 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6562.t1.stop1	Gvermi6562.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 1338284..1338286 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6562.t1.CDS1	Gvermi6562.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1338284..1339450 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6562.t1.exon1	Gvermi6562.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1338284..1339450 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6562.t1.start1	Gvermi6562.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 1339448..1339450 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6562.t1	Gvermi6562.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 1338284..1339450 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:1338284..1339450-
coding sequence from alignment at ScGOVlb_88:1338284..1339450-

mRNA sequence

>Gvermi6562.t1 ID=Gvermi6562.t1|Name=Gvermi6562.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=389bp
MAFVTSFYGTAVAPSKQSTSLRRSCARKPSPRTRMVVIARVPKTESVSRF
EKMRLRFGEPEVSEEKSGFTYTDFEQAMSKFDYSFENGDICTGRVSQLER
NGALVDIGAKASAYCPLVEMSMNKVDKPEHAVTIGEDREFQIISREDANG
QLKVSIRRIEYARAWERVAQLQAEDVTVHAVVASINRGGSLVLVEGLRAF
LPSSHTSIRSPREELIGMELPLKFLEVDSEKGRLVVSHRRAIVEKQMTNL
VAGEVVEGVVRGIKPYGAFIDIGGVSGLLHVSQISHDHVGDIGAALPDGS
VIKCMIINQDKEKGRISLSTKTLEPEPGDMLRDSKLVYEKAEEMAARYHQ
RLEEERKAAADVADDIVSTLDMASLDDIGVDPVPAEAA*

spliced messenger RNA

>Gvermi6562.t1 ID=Gvermi6562.t1|Name=Gvermi6562.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at ScGOVlb_88:1338284..1339450- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCGTCACCTCTTTCTACGGCACTGCCGTCGCTCCCTCGAAACA
ATCCACATCGCTGCGACGAAGCTGTGCTCGCAAGCCGTCACCCCGGACCA
GAATGGTCGTCATTGCGCGTGTCCCTAAAACCGAGAGTGTTTCGAGGTTT
GAAAAGATGCGATTAAGATTTGGAGAGCCAGAAGTTTCCGAGGAAAAGTC
AGGGTTTACGTACACCGATTTCGAGCAGGCCATGTCAAAGTTCGATTACA
GTTTTGAGAACGGCGACATTTGCACGGGGCGAGTCAGCCAGCTGGAGCGG
AATGGTGCCCTGGTAGACATTGGTGCAAAAGCGTCGGCATACTGTCCGTT
GGTTGAGATGTCGATGAACAAGGTTGACAAGCCAGAGCACGCAGTTACAA
TTGGTGAGGATAGAGAGTTCCAAATAATTTCAAGGGAGGATGCTAACGGT
CAGCTCAAGGTATCTATTCGTCGCATTGAGTATGCACGCGCATGGGAAAG
GGTTGCCCAACTGCAAGCTGAGGACGTCACTGTGCATGCTGTGGTGGCCT
CTATAAATCGCGGTGGCTCTCTTGTGCTTGTTGAAGGATTGCGCGCGTTT
CTTCCTTCTTCTCATACCTCTATTCGCTCCCCGCGCGAGGAGCTCATTGG
CATGGAACTTCCACTTAAATTCCTAGAGGTGGACAGCGAGAAGGGAAGAC
TTGTTGTGTCACATCGCCGTGCTATTGTTGAGAAGCAGATGACTAACTTG
GTCGCCGGTGAAGTTGTTGAAGGTGTTGTTCGGGGGATCAAGCCGTACGG
TGCTTTCATTGACATTGGAGGCGTATCTGGATTGCTGCATGTTTCCCAAA
TATCCCATGATCACGTGGGGGACATTGGCGCCGCCTTGCCGGATGGTTCT
GTTATCAAATGCATGATTATAAATCAAGACAAAGAGAAGGGCAGAATTTC
GCTCAGCACCAAGACTTTGGAACCTGAGCCAGGAGATATGCTTCGTGATT
CCAAACTTGTTTATGAGAAGGCTGAAGAAATGGCCGCTCGATACCATCAA
CGCCTCGAGGAAGAACGAAAAGCCGCTGCAGATGTTGCCGATGATATAGT
TTCAACATTAGACATGGCCTCACTGGATGACATTGGCGTTGATCCTGTGC
CAGCGGAAGCAGCATGA

protein sequence of Gvermi6562.t1

>Gvermi6562.t1 ID=Gvermi6562.t1|Name=Gvermi6562.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=389bp
MAFVTSFYGTAVAPSKQSTSLRRSCARKPSPRTRMVVIARVPKTESVSRF
EKMRLRFGEPEVSEEKSGFTYTDFEQAMSKFDYSFENGDICTGRVSQLER
NGALVDIGAKASAYCPLVEMSMNKVDKPEHAVTIGEDREFQIISREDANG
QLKVSIRRIEYARAWERVAQLQAEDVTVHAVVASINRGGSLVLVEGLRAF
LPSSHTSIRSPREELIGMELPLKFLEVDSEKGRLVVSHRRAIVEKQMTNL
VAGEVVEGVVRGIKPYGAFIDIGGVSGLLHVSQISHDHVGDIGAALPDGS
VIKCMIINQDKEKGRISLSTKTLEPEPGDMLRDSKLVYEKAEEMAARYHQ
RLEEERKAAADVADDIVSTLDMASLDDIGVDPVPAEAA*

mRNA from alignment at ScGOVlb_88:1338284..1339450-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6562.t1 ID=Gvermi6562.t1|Name=Gvermi6562.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at ScGOVlb_88:1338284..1339450- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATTCGTCACCTCTTTCTACGGCACTGCCGTCGCTCCCTCGAAACA
ATCCACATCGCTGCGACGAAGCTGTGCTCGCAAGCCGTCACCCCGGACCA
GAATGGTCGTCATTGCGCGTGTCCCTAAAACCGAGAGTGTTTCGAGGTTT
GAAAAGATGCGATTAAGATTTGGAGAGCCAGAAGTTTCCGAGGAAAAGTC
AGGGTTTACGTACACCGATTTCGAGCAGGCCATGTCAAAGTTCGATTACA
GTTTTGAGAACGGCGACATTTGCACGGGGCGAGTCAGCCAGCTGGAGCGG
AATGGTGCCCTGGTAGACATTGGTGCAAAAGCGTCGGCATACTGTCCGTT
GGTTGAGATGTCGATGAACAAGGTTGACAAGCCAGAGCACGCAGTTACAA
TTGGTGAGGATAGAGAGTTCCAAATAATTTCAAGGGAGGATGCTAACGGT
CAGCTCAAGGTATCTATTCGTCGCATTGAGTATGCACGCGCATGGGAAAG
GGTTGCCCAACTGCAAGCTGAGGACGTCACTGTGCATGCTGTGGTGGCCT
CTATAAATCGCGGTGGCTCTCTTGTGCTTGTTGAAGGATTGCGCGCGTTT
CTTCCTTCTTCTCATACCTCTATTCGCTCCCCGCGCGAGGAGCTCATTGG
CATGGAACTTCCACTTAAATTCCTAGAGGTGGACAGCGAGAAGGGAAGAC
TTGTTGTGTCACATCGCCGTGCTATTGTTGAGAAGCAGATGACTAACTTG
GTCGCCGGTGAAGTTGTTGAAGGTGTTGTTCGGGGGATCAAGCCGTACGG
TGCTTTCATTGACATTGGAGGCGTATCTGGATTGCTGCATGTTTCCCAAA
TATCCCATGATCACGTGGGGGACATTGGCGCCGCCTTGCCGGATGGTTCT
GTTATCAAATGCATGATTATAAATCAAGACAAAGAGAAGGGCAGAATTTC
GCTCAGCACCAAGACTTTGGAACCTGAGCCAGGAGATATGCTTCGTGATT
CCAAACTTGTTTATGAGAAGGCTGAAGAAATGGCCGCTCGATACCATCAA
CGCCTCGAGGAAGAACGAAAAGCCGCTGCAGATGTTGCCGATGATATAGT
TTCAACATTAGACATGGCCTCACTGGATGACATTGGCGTTGATCCTGTGC
CAGCGGAAGCAGCATGA

Coding sequence (CDS) from alignment at ScGOVlb_88:1338284..1339450-

>Gvermi6562.t1 ID=Gvermi6562.t1|Name=Gvermi6562.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1167bp|location=Sequence derived from alignment at ScGOVlb_88:1338284..1339450- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATTCGTCACCTCTTTCTACGGCACTGCCGTCGCTCCCTCGAAACA
ATCCACATCGCTGCGACGAAGCTGTGCTCGCAAGCCGTCACCCCGGACCA
GAATGGTCGTCATTGCGCGTGTCCCTAAAACCGAGAGTGTTTCGAGGTTT
GAAAAGATGCGATTAAGATTTGGAGAGCCAGAAGTTTCCGAGGAAAAGTC
AGGGTTTACGTACACCGATTTCGAGCAGGCCATGTCAAAGTTCGATTACA
GTTTTGAGAACGGCGACATTTGCACGGGGCGAGTCAGCCAGCTGGAGCGG
AATGGTGCCCTGGTAGACATTGGTGCAAAAGCGTCGGCATACTGTCCGTT
GGTTGAGATGTCGATGAACAAGGTTGACAAGCCAGAGCACGCAGTTACAA
TTGGTGAGGATAGAGAGTTCCAAATAATTTCAAGGGAGGATGCTAACGGT
CAGCTCAAGGTATCTATTCGTCGCATTGAGTATGCACGCGCATGGGAAAG
GGTTGCCCAACTGCAAGCTGAGGACGTCACTGTGCATGCTGTGGTGGCCT
CTATAAATCGCGGTGGCTCTCTTGTGCTTGTTGAAGGATTGCGCGCGTTT
CTTCCTTCTTCTCATACCTCTATTCGCTCCCCGCGCGAGGAGCTCATTGG
CATGGAACTTCCACTTAAATTCCTAGAGGTGGACAGCGAGAAGGGAAGAC
TTGTTGTGTCACATCGCCGTGCTATTGTTGAGAAGCAGATGACTAACTTG
GTCGCCGGTGAAGTTGTTGAAGGTGTTGTTCGGGGGATCAAGCCGTACGG
TGCTTTCATTGACATTGGAGGCGTATCTGGATTGCTGCATGTTTCCCAAA
TATCCCATGATCACGTGGGGGACATTGGCGCCGCCTTGCCGGATGGTTCT
GTTATCAAATGCATGATTATAAATCAAGACAAAGAGAAGGGCAGAATTTC
GCTCAGCACCAAGACTTTGGAACCTGAGCCAGGAGATATGCTTCGTGATT
CCAAACTTGTTTATGAGAAGGCTGAAGAAATGGCCGCTCGATACCATCAA
CGCCTCGAGGAAGAACGAAAAGCCGCTGCAGATGTTGCCGATGATATAGT
TTCAACATTAGACATGGCCTCACTGGATGACATTGGCGTTGATCCTGTGC
CAGCGGAAGCAGCATGA