Gvermi6557.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6557.t1
Unique Name	Gvermi6557.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1324196..1325827 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	69293.ENSGACP00000007173
Preferred name	SH3KBP1
PFAMs	SH3_9
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K12470
KEGG Pathway	ko04144,map04144
GOs	GO:0000902,GO:0000904,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005912,GO:0005924,GO:0005925,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007154,GO:0007267,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008360,GO:0009605,GO:0009653,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0012506,GO:0016020,GO:0016043,GO:0016477,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030054,GO:0030055,GO:0030139,GO:0030154,GO:0030182,GO:0030659,GO:0031090,GO:0031175,GO:0031410,GO:0031625,GO:0031982,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0040011,GO:0042058,GO:0042059,GO:0042221,GO:0042330,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044389,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051674,GO:0061024,GO:0061564,GO:0065007,GO:0065008,GO:0070161,GO:0071840,GO:0071944,GO:0097458,GO:0097485,GO:0097708,GO:0120025,GO:0120036,GO:0120039,GO:1901184,GO:1901185
Evalue	1.71e-09
EggNOG OGs	KOG4348@1\|root,KOG4348@2759\|Eukaryota,38DPF@33154\|Opisthokonta,3BAC3@33208\|Metazoa,3D1ER@33213\|Bilateria,482WN@7711\|Chordata,48Z0Q@7742\|Vertebrata,49RU4@7898\|Actinopterygii
Description	SH3-domain kinase binding protein 1
COG category	T
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6557	Gvermi6557	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 1324196..1325827 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6557.t1.start1	Gvermi6557.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 1324196..1324198 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6557.t1.CDS1	Gvermi6557.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1324196..1325827 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6557.t1.exon1	Gvermi6557.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1324196..1325827 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6557.t1.stop1	Gvermi6557.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 1325825..1325827 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6557.t1	Gvermi6557.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 1324196..1325827 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:1324196..1325827+
coding sequence from alignment at ScGOVlb_88:1324196..1325827+

mRNA sequence

>Gvermi6557.t1 ID=Gvermi6557.t1|Name=Gvermi6557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=544bp
MWGESTRLSSARKEPVKPAMNVTMPPERDSAVFEQKSRKFDEADAAFRSL
VEALAAYKTAVFHAAECGVAVATAMDSFFTQPDHKQKQLVGKFLESQRAI
RAKWVSEAEKTYDAEVMAPIKSRLDEIPKVRDTIRARASYKADMEKRQKK
LQTERKRDTSRLRDKQRRLKEITNQYTMFHNRVIQSFNYIERNMGTFVTG
PLRALVTVMAEFSKSTVDSMEEIVKLVAESPPITTDMSPAAPLTSPTEDV
GGIIGEEVWDGDYVFDDDTEVEGDDDEDRNESEQNDPGTGLGRISSHLPP
RGRVHSADGVSKNSGSLGGDQFGLDFSAVISPRRGHSTSSAPADVSRPFS
PAVSLPAFSSTAIGSHRDISLGPSSTSGRISQNGQDTFLPPSSVASSTST
ENVAHEAMRLSPKSAPSVRRRRQGEGKESVDTVGSLEGGTRTEVIRRVVA
KYDFAPQETNELELRTGDVVEVTAMTDGGWWMGQKGRNCGYFPRNYTRVL
TTEEELAYMNDRRRRARGGHKRHDSGDSRRSGQTALQSSVYLQ*

spliced messenger RNA

>Gvermi6557.t1 ID=Gvermi6557.t1|Name=Gvermi6557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at ScGOVlb_88:1324196..1325827+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGGCGAGTCTACGCGACTCTCTAGCGCCAGGAAAGAACCCGTCAA
ACCTGCCATGAACGTCACCATGCCGCCCGAGCGAGACTCCGCCGTCTTCG
AACAGAAGTCACGCAAGTTTGACGAGGCTGATGCCGCCTTTCGCTCCTTA
GTCGAAGCGCTGGCCGCATACAAGACCGCCGTCTTTCACGCCGCTGAGTG
CGGCGTGGCCGTCGCCACCGCCATGGACTCCTTCTTCACGCAACCAGACC
ACAAGCAGAAACAACTCGTAGGCAAGTTTCTCGAGTCGCAGCGCGCCATT
CGCGCCAAGTGGGTCTCGGAGGCAGAGAAGACCTATGACGCAGAGGTGAT
GGCCCCCATCAAGAGCAGGCTAGATGAAATTCCAAAGGTACGAGATACGA
TTCGAGCGCGAGCTAGTTACAAGGCCGATATGGAAAAGCGTCAGAAAAAA
CTGCAGACAGAACGGAAAAGAGATACTTCTCGCCTTCGAGATAAGCAGCG
TCGTCTCAAGGAAATCACCAACCAGTATACAATGTTCCATAACCGTGTCA
TTCAGAGCTTCAATTATATCGAGCGAAACATGGGCACCTTTGTCACCGGT
CCATTGCGCGCACTCGTCACTGTCATGGCCGAATTCTCGAAGTCCACCGT
AGACTCTATGGAGGAAATCGTTAAACTCGTCGCCGAATCACCTCCTATAA
CCACCGATATGTCTCCTGCCGCTCCTCTTACGTCCCCCACCGAAGATGTC
GGAGGCATTATTGGGGAGGAAGTCTGGGATGGTGACTACGTCTTTGACGA
TGATACAGAAGTTGAAGGTGATGACGACGAAGACAGGAACGAATCTGAGC
AAAATGACCCTGGTACTGGCCTTGGCCGCATTAGCTCTCACCTCCCGCCC
CGTGGCAGAGTACACAGTGCTGATGGCGTTTCGAAGAATTCTGGCTCTCT
CGGTGGTGATCAATTCGGCTTGGATTTTTCGGCTGTAATAAGTCCTCGTC
GAGGTCATTCGACTTCATCGGCTCCGGCAGATGTTTCGCGTCCCTTCTCT
CCGGCTGTTTCGCTTCCGGCATTTTCTTCAACCGCCATTGGTTCTCACAG
AGACATTAGCTTAGGCCCGAGCTCTACGTCTGGTCGTATCTCTCAAAATG
GGCAGGACACATTTTTGCCTCCGTCTTCTGTTGCGAGCAGTACGTCTACT
GAAAACGTTGCTCATGAGGCAATGCGACTCTCACCAAAGAGTGCTCCGTC
GGTTAGACGTCGGCGACAAGGAGAAGGAAAGGAAAGTGTCGACACCGTGG
GCTCTTTGGAGGGTGGGACACGGACCGAAGTTATCAGGCGAGTCGTCGCG
AAGTACGACTTCGCACCGCAAGAAACTAACGAACTTGAATTACGAACTGG
GGATGTTGTCGAAGTTACTGCTATGACTGACGGTGGTTGGTGGATGGGGC
AGAAGGGGCGCAACTGTGGGTATTTCCCTCGGAATTATACCAGAGTACTT
ACAACCGAAGAAGAACTTGCGTACATGAATGACAGGAGAAGGCGGGCGCG
GGGAGGTCACAAAAGGCACGATTCTGGAGATTCGCGAAGATCGGGCCAAA
CAGCATTGCAGTCCTCTGTATATCTTCAGTGA

protein sequence of Gvermi6557.t1

>Gvermi6557.t1 ID=Gvermi6557.t1|Name=Gvermi6557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=544bp
MWGESTRLSSARKEPVKPAMNVTMPPERDSAVFEQKSRKFDEADAAFRSL
VEALAAYKTAVFHAAECGVAVATAMDSFFTQPDHKQKQLVGKFLESQRAI
RAKWVSEAEKTYDAEVMAPIKSRLDEIPKVRDTIRARASYKADMEKRQKK
LQTERKRDTSRLRDKQRRLKEITNQYTMFHNRVIQSFNYIERNMGTFVTG
PLRALVTVMAEFSKSTVDSMEEIVKLVAESPPITTDMSPAAPLTSPTEDV
GGIIGEEVWDGDYVFDDDTEVEGDDDEDRNESEQNDPGTGLGRISSHLPP
RGRVHSADGVSKNSGSLGGDQFGLDFSAVISPRRGHSTSSAPADVSRPFS
PAVSLPAFSSTAIGSHRDISLGPSSTSGRISQNGQDTFLPPSSVASSTST
ENVAHEAMRLSPKSAPSVRRRRQGEGKESVDTVGSLEGGTRTEVIRRVVA
KYDFAPQETNELELRTGDVVEVTAMTDGGWWMGQKGRNCGYFPRNYTRVL
TTEEELAYMNDRRRRARGGHKRHDSGDSRRSGQTALQSSVYLQ*

mRNA from alignment at ScGOVlb_88:1324196..1325827+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6557.t1 ID=Gvermi6557.t1|Name=Gvermi6557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at ScGOVlb_88:1324196..1325827+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGGCGAGTCTACGCGACTCTCTAGCGCCAGGAAAGAACCCGTCAA
ACCTGCCATGAACGTCACCATGCCGCCCGAGCGAGACTCCGCCGTCTTCG
AACAGAAGTCACGCAAGTTTGACGAGGCTGATGCCGCCTTTCGCTCCTTA
GTCGAAGCGCTGGCCGCATACAAGACCGCCGTCTTTCACGCCGCTGAGTG
CGGCGTGGCCGTCGCCACCGCCATGGACTCCTTCTTCACGCAACCAGACC
ACAAGCAGAAACAACTCGTAGGCAAGTTTCTCGAGTCGCAGCGCGCCATT
CGCGCCAAGTGGGTCTCGGAGGCAGAGAAGACCTATGACGCAGAGGTGAT
GGCCCCCATCAAGAGCAGGCTAGATGAAATTCCAAAGGTACGAGATACGA
TTCGAGCGCGAGCTAGTTACAAGGCCGATATGGAAAAGCGTCAGAAAAAA
CTGCAGACAGAACGGAAAAGAGATACTTCTCGCCTTCGAGATAAGCAGCG
TCGTCTCAAGGAAATCACCAACCAGTATACAATGTTCCATAACCGTGTCA
TTCAGAGCTTCAATTATATCGAGCGAAACATGGGCACCTTTGTCACCGGT
CCATTGCGCGCACTCGTCACTGTCATGGCCGAATTCTCGAAGTCCACCGT
AGACTCTATGGAGGAAATCGTTAAACTCGTCGCCGAATCACCTCCTATAA
CCACCGATATGTCTCCTGCCGCTCCTCTTACGTCCCCCACCGAAGATGTC
GGAGGCATTATTGGGGAGGAAGTCTGGGATGGTGACTACGTCTTTGACGA
TGATACAGAAGTTGAAGGTGATGACGACGAAGACAGGAACGAATCTGAGC
AAAATGACCCTGGTACTGGCCTTGGCCGCATTAGCTCTCACCTCCCGCCC
CGTGGCAGAGTACACAGTGCTGATGGCGTTTCGAAGAATTCTGGCTCTCT
CGGTGGTGATCAATTCGGCTTGGATTTTTCGGCTGTAATAAGTCCTCGTC
GAGGTCATTCGACTTCATCGGCTCCGGCAGATGTTTCGCGTCCCTTCTCT
CCGGCTGTTTCGCTTCCGGCATTTTCTTCAACCGCCATTGGTTCTCACAG
AGACATTAGCTTAGGCCCGAGCTCTACGTCTGGTCGTATCTCTCAAAATG
GGCAGGACACATTTTTGCCTCCGTCTTCTGTTGCGAGCAGTACGTCTACT
GAAAACGTTGCTCATGAGGCAATGCGACTCTCACCAAAGAGTGCTCCGTC
GGTTAGACGTCGGCGACAAGGAGAAGGAAAGGAAAGTGTCGACACCGTGG
GCTCTTTGGAGGGTGGGACACGGACCGAAGTTATCAGGCGAGTCGTCGCG
AAGTACGACTTCGCACCGCAAGAAACTAACGAACTTGAATTACGAACTGG
GGATGTTGTCGAAGTTACTGCTATGACTGACGGTGGTTGGTGGATGGGGC
AGAAGGGGCGCAACTGTGGGTATTTCCCTCGGAATTATACCAGAGTACTT
ACAACCGAAGAAGAACTTGCGTACATGAATGACAGGAGAAGGCGGGCGCG
GGGAGGTCACAAAAGGCACGATTCTGGAGATTCGCGAAGATCGGGCCAAA
CAGCATTGCAGTCCTCTGTATATCTTCAGTGA

Coding sequence (CDS) from alignment at ScGOVlb_88:1324196..1325827+

>Gvermi6557.t1 ID=Gvermi6557.t1|Name=Gvermi6557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1632bp|location=Sequence derived from alignment at ScGOVlb_88:1324196..1325827+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGGCGAGTCTACGCGACTCTCTAGCGCCAGGAAAGAACCCGTCAA
ACCTGCCATGAACGTCACCATGCCGCCCGAGCGAGACTCCGCCGTCTTCG
AACAGAAGTCACGCAAGTTTGACGAGGCTGATGCCGCCTTTCGCTCCTTA
GTCGAAGCGCTGGCCGCATACAAGACCGCCGTCTTTCACGCCGCTGAGTG
CGGCGTGGCCGTCGCCACCGCCATGGACTCCTTCTTCACGCAACCAGACC
ACAAGCAGAAACAACTCGTAGGCAAGTTTCTCGAGTCGCAGCGCGCCATT
CGCGCCAAGTGGGTCTCGGAGGCAGAGAAGACCTATGACGCAGAGGTGAT
GGCCCCCATCAAGAGCAGGCTAGATGAAATTCCAAAGGTACGAGATACGA
TTCGAGCGCGAGCTAGTTACAAGGCCGATATGGAAAAGCGTCAGAAAAAA
CTGCAGACAGAACGGAAAAGAGATACTTCTCGCCTTCGAGATAAGCAGCG
TCGTCTCAAGGAAATCACCAACCAGTATACAATGTTCCATAACCGTGTCA
TTCAGAGCTTCAATTATATCGAGCGAAACATGGGCACCTTTGTCACCGGT
CCATTGCGCGCACTCGTCACTGTCATGGCCGAATTCTCGAAGTCCACCGT
AGACTCTATGGAGGAAATCGTTAAACTCGTCGCCGAATCACCTCCTATAA
CCACCGATATGTCTCCTGCCGCTCCTCTTACGTCCCCCACCGAAGATGTC
GGAGGCATTATTGGGGAGGAAGTCTGGGATGGTGACTACGTCTTTGACGA
TGATACAGAAGTTGAAGGTGATGACGACGAAGACAGGAACGAATCTGAGC
AAAATGACCCTGGTACTGGCCTTGGCCGCATTAGCTCTCACCTCCCGCCC
CGTGGCAGAGTACACAGTGCTGATGGCGTTTCGAAGAATTCTGGCTCTCT
CGGTGGTGATCAATTCGGCTTGGATTTTTCGGCTGTAATAAGTCCTCGTC
GAGGTCATTCGACTTCATCGGCTCCGGCAGATGTTTCGCGTCCCTTCTCT
CCGGCTGTTTCGCTTCCGGCATTTTCTTCAACCGCCATTGGTTCTCACAG
AGACATTAGCTTAGGCCCGAGCTCTACGTCTGGTCGTATCTCTCAAAATG
GGCAGGACACATTTTTGCCTCCGTCTTCTGTTGCGAGCAGTACGTCTACT
GAAAACGTTGCTCATGAGGCAATGCGACTCTCACCAAAGAGTGCTCCGTC
GGTTAGACGTCGGCGACAAGGAGAAGGAAAGGAAAGTGTCGACACCGTGG
GCTCTTTGGAGGGTGGGACACGGACCGAAGTTATCAGGCGAGTCGTCGCG
AAGTACGACTTCGCACCGCAAGAAACTAACGAACTTGAATTACGAACTGG
GGATGTTGTCGAAGTTACTGCTATGACTGACGGTGGTTGGTGGATGGGGC
AGAAGGGGCGCAACTGTGGGTATTTCCCTCGGAATTATACCAGAGTACTT
ACAACCGAAGAAGAACTTGCGTACATGAATGACAGGAGAAGGCGGGCGCG
GGGAGGTCACAAAAGGCACGATTCTGGAGATTCGCGAAGATCGGGCCAAA
CAGCATTGCAGTCCTCTGTATATCTTCAGTGA