Gvermi6550.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6550.t1
Unique NameGvermi6550.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1307455..1308396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6550Gvermi6550Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1307455..1308396 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6550.t1.stop1Gvermi6550.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1307455..1307457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6550.t1.CDS1Gvermi6550.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1307455..1308396 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6550.t1.exon1Gvermi6550.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1307455..1308396 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6550.t1.start1Gvermi6550.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1308394..1308396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6550.t1Gvermi6550.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1307455..1308396 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6550.t1 ID=Gvermi6550.t1|Name=Gvermi6550.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=314bp
MQNPNSQNDVTLNTFLRLQRWRHRQQQLWPGLFSDFLTVLDTSENPKTHT
ITLQSFRNVEHRLLIDQVPILLCDGCGALQQFVSPASSDSTLPPSKEEAS
SLFLTCSSCSFPTPLGHFRTILALPNCGPHLPQPLALAILVEATNSQVSL
ANTHPTLHGWIRDNKCRMEGLHVLLGAIGAREEQLCPPKLSASDNNETSS
VLEEQRSNYYCAQQAERYLERDLSSEIDPKLSFSVTDLYQAPIEGEEGIQ
AGERAKTILMEAGRIWKECAASIPDKHFIFKLNNLAKEFLVEQTNARIYN
HARFVLSPGKPDT*
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spliced messenger RNA

>Gvermi6550.t1 ID=Gvermi6550.t1|Name=Gvermi6550.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=942bp|location=Sequence derived from alignment at ScGOVlb_88:1307455..1308396- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAATCCCAACTCACAAAACGATGTAACTCTCAATACATTTCTGCG
CCTTCAGCGATGGCGTCATCGCCAGCAACAGCTCTGGCCAGGACTATTCT
CCGACTTCCTGACCGTTTTGGATACATCTGAAAACCCTAAAACTCATACT
ATTACTCTCCAATCTTTTCGCAATGTTGAACACAGACTTTTAATAGATCA
AGTCCCAATACTTCTTTGTGACGGCTGTGGAGCTCTTCAACAATTTGTTT
CCCCGGCTTCCTCGGACAGCACTTTGCCTCCTTCTAAAGAAGAAGCATCT
TCTCTCTTCCTCACTTGCTCTTCCTGTAGCTTCCCCACCCCACTCGGTCA
CTTTCGCACCATCCTAGCTCTGCCAAACTGTGGACCTCATCTACCCCAGC
CGTTGGCTCTGGCAATCCTCGTAGAAGCCACCAATTCTCAAGTGTCATTA
GCGAATACACACCCCACCCTTCACGGATGGATTCGAGACAATAAGTGTCG
TATGGAAGGACTACATGTTCTTCTTGGCGCTATCGGTGCTAGAGAGGAGC
AATTATGTCCGCCGAAACTCAGTGCCTCTGATAACAACGAAACATCGTCA
GTATTAGAAGAGCAGCGATCCAATTACTACTGTGCGCAACAGGCAGAACG
CTACCTGGAGAGGGATCTCTCTTCTGAAATAGACCCCAAGTTAAGCTTTT
CAGTAACAGACCTTTATCAAGCTCCTATCGAAGGTGAAGAAGGCATACAA
GCGGGAGAGCGAGCCAAAACTATTTTAATGGAGGCCGGTAGAATTTGGAA
AGAATGTGCAGCTTCAATCCCGGACAAACATTTCATTTTCAAGCTAAACA
ATCTCGCCAAGGAGTTTCTCGTCGAGCAGACAAATGCACGTATTTACAAC
CATGCTCGTTTTGTGTTATCTCCCGGAAAGCCTGACACTTGA
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protein sequence of Gvermi6550.t1

>Gvermi6550.t1 ID=Gvermi6550.t1|Name=Gvermi6550.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=314bp
MQNPNSQNDVTLNTFLRLQRWRHRQQQLWPGLFSDFLTVLDTSENPKTHT
ITLQSFRNVEHRLLIDQVPILLCDGCGALQQFVSPASSDSTLPPSKEEAS
SLFLTCSSCSFPTPLGHFRTILALPNCGPHLPQPLALAILVEATNSQVSL
ANTHPTLHGWIRDNKCRMEGLHVLLGAIGAREEQLCPPKLSASDNNETSS
VLEEQRSNYYCAQQAERYLERDLSSEIDPKLSFSVTDLYQAPIEGEEGIQ
AGERAKTILMEAGRIWKECAASIPDKHFIFKLNNLAKEFLVEQTNARIYN
HARFVLSPGKPDT*
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mRNA from alignment at ScGOVlb_88:1307455..1308396-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6550.t1 ID=Gvermi6550.t1|Name=Gvermi6550.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=942bp|location=Sequence derived from alignment at ScGOVlb_88:1307455..1308396- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAATCCCAACTCACAAAACGATGTAACTCTCAATACATTTCTGCG
CCTTCAGCGATGGCGTCATCGCCAGCAACAGCTCTGGCCAGGACTATTCT
CCGACTTCCTGACCGTTTTGGATACATCTGAAAACCCTAAAACTCATACT
ATTACTCTCCAATCTTTTCGCAATGTTGAACACAGACTTTTAATAGATCA
AGTCCCAATACTTCTTTGTGACGGCTGTGGAGCTCTTCAACAATTTGTTT
CCCCGGCTTCCTCGGACAGCACTTTGCCTCCTTCTAAAGAAGAAGCATCT
TCTCTCTTCCTCACTTGCTCTTCCTGTAGCTTCCCCACCCCACTCGGTCA
CTTTCGCACCATCCTAGCTCTGCCAAACTGTGGACCTCATCTACCCCAGC
CGTTGGCTCTGGCAATCCTCGTAGAAGCCACCAATTCTCAAGTGTCATTA
GCGAATACACACCCCACCCTTCACGGATGGATTCGAGACAATAAGTGTCG
TATGGAAGGACTACATGTTCTTCTTGGCGCTATCGGTGCTAGAGAGGAGC
AATTATGTCCGCCGAAACTCAGTGCCTCTGATAACAACGAAACATCGTCA
GTATTAGAAGAGCAGCGATCCAATTACTACTGTGCGCAACAGGCAGAACG
CTACCTGGAGAGGGATCTCTCTTCTGAAATAGACCCCAAGTTAAGCTTTT
CAGTAACAGACCTTTATCAAGCTCCTATCGAAGGTGAAGAAGGCATACAA
GCGGGAGAGCGAGCCAAAACTATTTTAATGGAGGCCGGTAGAATTTGGAA
AGAATGTGCAGCTTCAATCCCGGACAAACATTTCATTTTCAAGCTAAACA
ATCTCGCCAAGGAGTTTCTCGTCGAGCAGACAAATGCACGTATTTACAAC
CATGCTCGTTTTGTGTTATCTCCCGGAAAGCCTGACACTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1307455..1308396-

>Gvermi6550.t1 ID=Gvermi6550.t1|Name=Gvermi6550.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=942bp|location=Sequence derived from alignment at ScGOVlb_88:1307455..1308396- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAATCCCAACTCACAAAACGATGTAACTCTCAATACATTTCTGCG
CCTTCAGCGATGGCGTCATCGCCAGCAACAGCTCTGGCCAGGACTATTCT
CCGACTTCCTGACCGTTTTGGATACATCTGAAAACCCTAAAACTCATACT
ATTACTCTCCAATCTTTTCGCAATGTTGAACACAGACTTTTAATAGATCA
AGTCCCAATACTTCTTTGTGACGGCTGTGGAGCTCTTCAACAATTTGTTT
CCCCGGCTTCCTCGGACAGCACTTTGCCTCCTTCTAAAGAAGAAGCATCT
TCTCTCTTCCTCACTTGCTCTTCCTGTAGCTTCCCCACCCCACTCGGTCA
CTTTCGCACCATCCTAGCTCTGCCAAACTGTGGACCTCATCTACCCCAGC
CGTTGGCTCTGGCAATCCTCGTAGAAGCCACCAATTCTCAAGTGTCATTA
GCGAATACACACCCCACCCTTCACGGATGGATTCGAGACAATAAGTGTCG
TATGGAAGGACTACATGTTCTTCTTGGCGCTATCGGTGCTAGAGAGGAGC
AATTATGTCCGCCGAAACTCAGTGCCTCTGATAACAACGAAACATCGTCA
GTATTAGAAGAGCAGCGATCCAATTACTACTGTGCGCAACAGGCAGAACG
CTACCTGGAGAGGGATCTCTCTTCTGAAATAGACCCCAAGTTAAGCTTTT
CAGTAACAGACCTTTATCAAGCTCCTATCGAAGGTGAAGAAGGCATACAA
GCGGGAGAGCGAGCCAAAACTATTTTAATGGAGGCCGGTAGAATTTGGAA
AGAATGTGCAGCTTCAATCCCGGACAAACATTTCATTTTCAAGCTAAACA
ATCTCGCCAAGGAGTTTCTCGTCGAGCAGACAAATGCACGTATTTACAAC
CATGCTCGTTTTGTGTTATCTCCCGGAAAGCCTGACACTTGA
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