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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704779.1 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.42e-09 |
| EggNOG OGs | 2E7NA@1|root,2SE7N@2759|Eukaryota |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi6465.t1 ID=Gvermi6465.t1|Name=Gvermi6465.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=870bp MDVCPPPLLQPVPPPPKHQFHPQNLNGSFDYLASPHRKQLYHRSLWRQIA SAHHYLIGHARTDPRFVSNKRPLDCLEHLRPSLLVTLLPDGYVRHDSVTS ALELPPSSPMAAIHSPSPDVSTSSRHPSPSPNKPSSNNKNHNITTQPRYP YDRNSKHFLRCLDLGIIPPAEDLPEMSQRFYYNGCLIADINDLRYCPSSQ SKPPPSNVFRVLLRPDMASLYQDLEQETASLDPAVARAVERIIINATSGY LNLCPRPLLTSYIRDGSVHKLTHVFNIIRKPRRQSVRRPPGFARVPHPTS TAALLLISAAEKQQTIQRYMSLAKRATASELSTVTTKQSSYITPAPNPTS ILNHSAPRPKSEPNVANGISIKPGEPQAVTNRNPNKPARPWRFIIPSKRL LQNANQQALKSKKAVGLSSRPYFHPQYLTSILNPERVRTVRFTLPDPDVA ADFKRAKAMWESAALLGGHVLEKAKDELRLQNTEINKGGIPEMVVQMLRS VQGSLEVIYVMSATGDKKRDYYRTVIANVAEGHFLIDQVKAVVCREGYVC TQDYSQEEIIQFQKQKRMNQNNPNRQATAAGLNANAQYPQVSRPTFSANT AKQLQEQLANGLGAKVVGDVKSNPMVDALQAPGRDAHAKVRLLKESQKQR TQQMQKRMQQQQQHQQHQQEQLRQQHQHQILKEQFQRQSQLHPALQLQQI TSRSRPQMGPVGRMDKNGINIHRPAGSLSNQLQTMVSKGPGQTPTNAQIS QGLIGSIGTHNPNMGNMGISNTISPSQLFPPQQLQQLQQHLRQQQLQQRG AMGQISQATNSYGRGANLNTFIARNFPPNGLAGAWSPGTGFRGAAGSDGG RLPPQFTENIEAPPHLGKR* back to topspliced messenger RNA >Gvermi6465.t1 ID=Gvermi6465.t1|Name=Gvermi6465.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2610bp|location=Sequence derived from alignment at ScGOVlb_88:838247..840856+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGACGTCTGTCCGCCCCCCCTGCTCCAGCCCGTACCGCCTCCTCCGAA ACATCAGTTTCACCCCCAAAACCTCAACGGCTCTTTCGATTATCTTGCGT CCCCGCATCGCAAACAACTCTATCATCGATCTTTATGGCGTCAAATCGCA AGTGCTCACCACTATCTCATTGGACACGCGCGCACCGACCCGCGATTTGT TTCCAACAAGCGCCCTTTAGACTGTCTTGAGCATCTACGCCCTTCTCTCC TTGTTACGCTCCTGCCGGATGGATACGTGCGCCACGACTCCGTCACCTCA GCCTTAGAACTGCCCCCGTCATCCCCGATGGCCGCAATTCACTCTCCGTC CCCCGACGTCTCAACCTCGTCCAGACATCCATCGCCGTCGCCTAACAAAC CATCGAGTAACAACAAGAATCATAACATTACCACGCAGCCGCGCTATCCG TACGACCGCAACAGCAAACACTTTTTGCGTTGCCTGGATCTGGGAATCAT TCCACCTGCGGAAGATCTACCCGAGATGAGCCAGCGATTCTATTACAACG GCTGTCTAATCGCCGATATCAACGACCTGCGCTACTGCCCTTCTTCGCAG TCGAAGCCACCGCCGAGCAACGTGTTCCGGGTTCTACTGCGACCCGATAT GGCTAGTCTGTATCAAGACTTGGAACAAGAAACCGCCAGCCTTGATCCAG CCGTTGCGCGCGCTGTCGAGCGAATCATTATCAATGCCACATCGGGTTAT CTCAACTTATGCCCCCGACCGCTACTCACTTCTTACATTCGAGATGGCTC TGTACATAAGCTTACCCACGTTTTTAACATCATTCGCAAGCCGAGAAGAC AATCGGTGCGCCGCCCGCCTGGATTCGCCCGTGTTCCACATCCTACTTCA ACAGCAGCGCTTCTGCTTATTTCCGCAGCAGAAAAGCAGCAAACCATACA ACGCTACATGTCGCTTGCAAAACGCGCCACGGCATCGGAACTGTCTACCG TGACCACCAAGCAATCTTCTTACATCACTCCTGCGCCTAACCCTACTTCT ATTCTCAATCACTCTGCACCGAGACCCAAGTCTGAACCGAATGTTGCGAA CGGTATCAGTATCAAGCCTGGAGAACCTCAAGCCGTCACTAACCGCAACC CCAACAAACCTGCTCGTCCATGGCGATTCATAATCCCTTCAAAAAGACTT CTTCAAAACGCTAACCAGCAAGCTCTCAAATCGAAGAAAGCGGTGGGCTT GTCTTCGCGACCGTATTTTCACCCACAGTATCTAACTTCAATTCTGAATC CAGAGCGAGTACGCACCGTGCGTTTTACGCTGCCCGACCCAGATGTTGCC GCCGATTTCAAGCGTGCGAAAGCCATGTGGGAGTCTGCTGCGCTACTTGG TGGCCATGTGCTAGAAAAGGCAAAAGACGAACTTAGGCTGCAAAATACCG AAATCAACAAGGGCGGCATTCCGGAGATGGTCGTGCAGATGCTTCGCTCG GTGCAAGGGTCTTTGGAAGTGATATACGTGATGTCGGCTACGGGAGACAA GAAACGCGACTACTATCGGACTGTTATTGCTAACGTCGCAGAGGGCCACT TCCTCATTGACCAAGTCAAGGCTGTTGTTTGCAGGGAGGGATACGTTTGT ACTCAAGATTATAGCCAAGAAGAGATTATTCAATTCCAGAAACAGAAACG AATGAATCAAAACAATCCGAACCGACAAGCAACAGCAGCAGGTTTGAACG CTAATGCACAGTATCCTCAAGTTTCGCGTCCTACGTTCTCAGCTAACACA GCAAAGCAGTTACAAGAGCAATTGGCAAACGGTCTGGGTGCTAAGGTTGT AGGAGATGTCAAGAGCAATCCCATGGTAGATGCTCTGCAAGCACCAGGGC GTGACGCACATGCGAAGGTGAGATTGTTGAAGGAGAGCCAGAAGCAAAGG ACACAGCAGATGcagaaacgaatgcagcagcagcagcagcatcaacaaca ccaacaggaacagttacgacaacagcaccAACATCAAATTTTGAAGGAAC AGTTTCAGAGACAAAGTCAGTTGCATCCGGCATTGCAACTCCAGCAAATA ACGAGTCGAAGCAGACCCCAGATGGGGCCCGTCGGACGGATGGACAAGAA TGGGATCAACATTCACCGTCCTGCCGGGTCGCTTTCAAATCAATTGCAGA CTATGGTCTCCAAAGGTCCTGGGCAAACCCCGACGAACGCGCAGATTTCA CAGGGACTAATTGGTTCAATTGGTACGCACAACCCCAACATGGGCAACAT GGGAATCTCGAACACGATATCCCCTTCTCAACTGTTTCCACCGCAGCAAC TACAACAACTGCAGCAACACCTAAGGCAACAGCAGTTGCAGCAGCGGGGG GCTATGGGACAAATCAGTCAAGCCACAAACTCGTACGGGCGAGGAGCAAA CCTGAATACATTCATTGCGCGGAACTTCCCGCCAAATGGTTTGGCGGGGG CTTGGTCTCCTGGCACAGGGTTTAGAGGGGCTGCGGGAAGTGATGGAGGT AGATTACCGCCCCAGTTCACGGAGAATATTGAAGCTCCTCCACATCTTGG AAAGAGGTAG back to topprotein sequence of Gvermi6465.t1 >Gvermi6465.t1 ID=Gvermi6465.t1|Name=Gvermi6465.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=870bp
MDVCPPPLLQPVPPPPKHQFHPQNLNGSFDYLASPHRKQLYHRSLWRQIA SAHHYLIGHARTDPRFVSNKRPLDCLEHLRPSLLVTLLPDGYVRHDSVTS ALELPPSSPMAAIHSPSPDVSTSSRHPSPSPNKPSSNNKNHNITTQPRYP YDRNSKHFLRCLDLGIIPPAEDLPEMSQRFYYNGCLIADINDLRYCPSSQ SKPPPSNVFRVLLRPDMASLYQDLEQETASLDPAVARAVERIIINATSGY LNLCPRPLLTSYIRDGSVHKLTHVFNIIRKPRRQSVRRPPGFARVPHPTS TAALLLISAAEKQQTIQRYMSLAKRATASELSTVTTKQSSYITPAPNPTS ILNHSAPRPKSEPNVANGISIKPGEPQAVTNRNPNKPARPWRFIIPSKRL LQNANQQALKSKKAVGLSSRPYFHPQYLTSILNPERVRTVRFTLPDPDVA ADFKRAKAMWESAALLGGHVLEKAKDELRLQNTEINKGGIPEMVVQMLRS VQGSLEVIYVMSATGDKKRDYYRTVIANVAEGHFLIDQVKAVVCREGYVC TQDYSQEEIIQFQKQKRMNQNNPNRQATAAGLNANAQYPQVSRPTFSANT AKQLQEQLANGLGAKVVGDVKSNPMVDALQAPGRDAHAKVRLLKESQKQR TQQMQKRMQQQQQHQQHQQEQLRQQHQHQILKEQFQRQSQLHPALQLQQI TSRSRPQMGPVGRMDKNGINIHRPAGSLSNQLQTMVSKGPGQTPTNAQIS QGLIGSIGTHNPNMGNMGISNTISPSQLFPPQQLQQLQQHLRQQQLQQRG AMGQISQATNSYGRGANLNTFIARNFPPNGLAGAWSPGTGFRGAAGSDGG RLPPQFTENIEAPPHLGKR* back to topmRNA from alignment at ScGOVlb_88:838247..840856+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi6465.t1 ID=Gvermi6465.t1|Name=Gvermi6465.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2610bp|location=Sequence derived from alignment at ScGOVlb_88:838247..840856+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGACGTCTGTCCGCCCCCCCTGCTCCAGCCCGTACCGCCTCCTCCGAA
ACATCAGTTTCACCCCCAAAACCTCAACGGCTCTTTCGATTATCTTGCGT
CCCCGCATCGCAAACAACTCTATCATCGATCTTTATGGCGTCAAATCGCA
AGTGCTCACCACTATCTCATTGGACACGCGCGCACCGACCCGCGATTTGT
TTCCAACAAGCGCCCTTTAGACTGTCTTGAGCATCTACGCCCTTCTCTCC
TTGTTACGCTCCTGCCGGATGGATACGTGCGCCACGACTCCGTCACCTCA
GCCTTAGAACTGCCCCCGTCATCCCCGATGGCCGCAATTCACTCTCCGTC
CCCCGACGTCTCAACCTCGTCCAGACATCCATCGCCGTCGCCTAACAAAC
CATCGAGTAACAACAAGAATCATAACATTACCACGCAGCCGCGCTATCCG
TACGACCGCAACAGCAAACACTTTTTGCGTTGCCTGGATCTGGGAATCAT
TCCACCTGCGGAAGATCTACCCGAGATGAGCCAGCGATTCTATTACAACG
GCTGTCTAATCGCCGATATCAACGACCTGCGCTACTGCCCTTCTTCGCAG
TCGAAGCCACCGCCGAGCAACGTGTTCCGGGTTCTACTGCGACCCGATAT
GGCTAGTCTGTATCAAGACTTGGAACAAGAAACCGCCAGCCTTGATCCAG
CCGTTGCGCGCGCTGTCGAGCGAATCATTATCAATGCCACATCGGGTTAT
CTCAACTTATGCCCCCGACCGCTACTCACTTCTTACATTCGAGATGGCTC
TGTACATAAGCTTACCCACGTTTTTAACATCATTCGCAAGCCGAGAAGAC
AATCGGTGCGCCGCCCGCCTGGATTCGCCCGTGTTCCACATCCTACTTCA
ACAGCAGCGCTTCTGCTTATTTCCGCAGCAGAAAAGCAGCAAACCATACA
ACGCTACATGTCGCTTGCAAAACGCGCCACGGCATCGGAACTGTCTACCG
TGACCACCAAGCAATCTTCTTACATCACTCCTGCGCCTAACCCTACTTCT
ATTCTCAATCACTCTGCACCGAGACCCAAGTCTGAACCGAATGTTGCGAA
CGGTATCAGTATCAAGCCTGGAGAACCTCAAGCCGTCACTAACCGCAACC
CCAACAAACCTGCTCGTCCATGGCGATTCATAATCCCTTCAAAAAGACTT
CTTCAAAACGCTAACCAGCAAGCTCTCAAATCGAAGAAAGCGGTGGGCTT
GTCTTCGCGACCGTATTTTCACCCACAGTATCTAACTTCAATTCTGAATC
CAGAGCGAGTACGCACCGTGCGTTTTACGCTGCCCGACCCAGATGTTGCC
GCCGATTTCAAGCGTGCGAAAGCCATGTGGGAGTCTGCTGCGCTACTTGG
TGGCCATGTGCTAGAAAAGGCAAAAGACGAACTTAGGCTGCAAAATACCG
AAATCAACAAGGGCGGCATTCCGGAGATGGTCGTGCAGATGCTTCGCTCG
GTGCAAGGGTCTTTGGAAGTGATATACGTGATGTCGGCTACGGGAGACAA
GAAACGCGACTACTATCGGACTGTTATTGCTAACGTCGCAGAGGGCCACT
TCCTCATTGACCAAGTCAAGGCTGTTGTTTGCAGGGAGGGATACGTTTGT
ACTCAAGATTATAGCCAAGAAGAGATTATTCAATTCCAGAAACAGAAACG
AATGAATCAAAACAATCCGAACCGACAAGCAACAGCAGCAGGTTTGAACG
CTAATGCACAGTATCCTCAAGTTTCGCGTCCTACGTTCTCAGCTAACACA
GCAAAGCAGTTACAAGAGCAATTGGCAAACGGTCTGGGTGCTAAGGTTGT
AGGAGATGTCAAGAGCAATCCCATGGTAGATGCTCTGCAAGCACCAGGGC
GTGACGCACATGCGAAGGTGAGATTGTTGAAGGAGAGCCAGAAGCAAAGG
ACACAGCAGATGcagaaacgaatgcagcagcagcagcagcatcaacaaca
ccaacaggaacagttacgacaacagcaccAACATCAAATTTTGAAGGAAC
AGTTTCAGAGACAAAGTCAGTTGCATCCGGCATTGCAACTCCAGCAAATA
ACGAGTCGAAGCAGACCCCAGATGGGGCCCGTCGGACGGATGGACAAGAA
TGGGATCAACATTCACCGTCCTGCCGGGTCGCTTTCAAATCAATTGCAGA
CTATGGTCTCCAAAGGTCCTGGGCAAACCCCGACGAACGCGCAGATTTCA
CAGGGACTAATTGGTTCAATTGGTACGCACAACCCCAACATGGGCAACAT
GGGAATCTCGAACACGATATCCCCTTCTCAACTGTTTCCACCGCAGCAAC
TACAACAACTGCAGCAACACCTAAGGCAACAGCAGTTGCAGCAGCGGGGG
GCTATGGGACAAATCAGTCAAGCCACAAACTCGTACGGGCGAGGAGCAAA
CCTGAATACATTCATTGCGCGGAACTTCCCGCCAAATGGTTTGGCGGGGG
CTTGGTCTCCTGGCACAGGGTTTAGAGGGGCTGCGGGAAGTGATGGAGGT
AGATTACCGCCCCAGTTCACGGAGAATATTGAAGCTCCTCCACATCTTGG
AAAGAGGTAG back to topCoding sequence (CDS) from alignment at ScGOVlb_88:838247..840856+ >Gvermi6465.t1 ID=Gvermi6465.t1|Name=Gvermi6465.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2610bp|location=Sequence derived from alignment at ScGOVlb_88:838247..840856+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGACGTCTGTCCGCCCCCCCTGCTCCAGCCCGTACCGCCTCCTCCGAA ACATCAGTTTCACCCCCAAAACCTCAACGGCTCTTTCGATTATCTTGCGT CCCCGCATCGCAAACAACTCTATCATCGATCTTTATGGCGTCAAATCGCA AGTGCTCACCACTATCTCATTGGACACGCGCGCACCGACCCGCGATTTGT TTCCAACAAGCGCCCTTTAGACTGTCTTGAGCATCTACGCCCTTCTCTCC TTGTTACGCTCCTGCCGGATGGATACGTGCGCCACGACTCCGTCACCTCA GCCTTAGAACTGCCCCCGTCATCCCCGATGGCCGCAATTCACTCTCCGTC CCCCGACGTCTCAACCTCGTCCAGACATCCATCGCCGTCGCCTAACAAAC CATCGAGTAACAACAAGAATCATAACATTACCACGCAGCCGCGCTATCCG TACGACCGCAACAGCAAACACTTTTTGCGTTGCCTGGATCTGGGAATCAT TCCACCTGCGGAAGATCTACCCGAGATGAGCCAGCGATTCTATTACAACG GCTGTCTAATCGCCGATATCAACGACCTGCGCTACTGCCCTTCTTCGCAG TCGAAGCCACCGCCGAGCAACGTGTTCCGGGTTCTACTGCGACCCGATAT GGCTAGTCTGTATCAAGACTTGGAACAAGAAACCGCCAGCCTTGATCCAG CCGTTGCGCGCGCTGTCGAGCGAATCATTATCAATGCCACATCGGGTTAT CTCAACTTATGCCCCCGACCGCTACTCACTTCTTACATTCGAGATGGCTC TGTACATAAGCTTACCCACGTTTTTAACATCATTCGCAAGCCGAGAAGAC AATCGGTGCGCCGCCCGCCTGGATTCGCCCGTGTTCCACATCCTACTTCA ACAGCAGCGCTTCTGCTTATTTCCGCAGCAGAAAAGCAGCAAACCATACA ACGCTACATGTCGCTTGCAAAACGCGCCACGGCATCGGAACTGTCTACCG TGACCACCAAGCAATCTTCTTACATCACTCCTGCGCCTAACCCTACTTCT ATTCTCAATCACTCTGCACCGAGACCCAAGTCTGAACCGAATGTTGCGAA CGGTATCAGTATCAAGCCTGGAGAACCTCAAGCCGTCACTAACCGCAACC CCAACAAACCTGCTCGTCCATGGCGATTCATAATCCCTTCAAAAAGACTT CTTCAAAACGCTAACCAGCAAGCTCTCAAATCGAAGAAAGCGGTGGGCTT GTCTTCGCGACCGTATTTTCACCCACAGTATCTAACTTCAATTCTGAATC CAGAGCGAGTACGCACCGTGCGTTTTACGCTGCCCGACCCAGATGTTGCC GCCGATTTCAAGCGTGCGAAAGCCATGTGGGAGTCTGCTGCGCTACTTGG TGGCCATGTGCTAGAAAAGGCAAAAGACGAACTTAGGCTGCAAAATACCG AAATCAACAAGGGCGGCATTCCGGAGATGGTCGTGCAGATGCTTCGCTCG GTGCAAGGGTCTTTGGAAGTGATATACGTGATGTCGGCTACGGGAGACAA GAAACGCGACTACTATCGGACTGTTATTGCTAACGTCGCAGAGGGCCACT TCCTCATTGACCAAGTCAAGGCTGTTGTTTGCAGGGAGGGATACGTTTGT ACTCAAGATTATAGCCAAGAAGAGATTATTCAATTCCAGAAACAGAAACG AATGAATCAAAACAATCCGAACCGACAAGCAACAGCAGCAGGTTTGAACG CTAATGCACAGTATCCTCAAGTTTCGCGTCCTACGTTCTCAGCTAACACA GCAAAGCAGTTACAAGAGCAATTGGCAAACGGTCTGGGTGCTAAGGTTGT AGGAGATGTCAAGAGCAATCCCATGGTAGATGCTCTGCAAGCACCAGGGC GTGACGCACATGCGAAGGTGAGATTGTTGAAGGAGAGCCAGAAGCAAAGG ACACAGCAGATGcagaaacgaatgcagcagcagcagcagcatcaacaaca ccaacaggaacagttacgacaacagcaccAACATCAAATTTTGAAGGAAC AGTTTCAGAGACAAAGTCAGTTGCATCCGGCATTGCAACTCCAGCAAATA ACGAGTCGAAGCAGACCCCAGATGGGGCCCGTCGGACGGATGGACAAGAA TGGGATCAACATTCACCGTCCTGCCGGGTCGCTTTCAAATCAATTGCAGA CTATGGTCTCCAAAGGTCCTGGGCAAACCCCGACGAACGCGCAGATTTCA CAGGGACTAATTGGTTCAATTGGTACGCACAACCCCAACATGGGCAACAT GGGAATCTCGAACACGATATCCCCTTCTCAACTGTTTCCACCGCAGCAAC TACAACAACTGCAGCAACACCTAAGGCAACAGCAGTTGCAGCAGCGGGGG GCTATGGGACAAATCAGTCAAGCCACAAACTCGTACGGGCGAGGAGCAAA CCTGAATACATTCATTGCGCGGAACTTCCCGCCAAATGGTTTGGCGGGGG CTTGGTCTCCTGGCACAGGGTTTAGAGGGGCTGCGGGAAGTGATGGAGGT AGATTACCGCCCCAGTTCACGGAGAATATTGAAGCTCCTCCACATCTTGG AAAGAGGTAG back to top
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