Gvermi6359.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6359.t1
Unique NameGvermi6359.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:267037..268629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6359Gvermi6359Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 267037..268629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6359.t1Gvermi6359.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 267037..268629 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6359.t1.start1Gvermi6359.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 267037..267039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6359.t1.CDS1Gvermi6359.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 267037..267285 +
Gvermi6359.t1.CDS2Gvermi6359.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 267925..268629 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6359.t1.exon1Gvermi6359.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 267037..267285 +
Gvermi6359.t1.exon2Gvermi6359.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 267925..268629 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6359.t1.intron1Gvermi6359.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 267286..267924 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6359.t1.stop1Gvermi6359.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 268627..268629 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6359.t1 ID=Gvermi6359.t1|Name=Gvermi6359.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=318bp
MAAVALNNLPWWTSDADVEAFCALAHAEAQRAIAAVRFAVDPACGKSLGR
VAIALSAPDLAEPLRAALAENPPPSASPAAPVTPDAERARSHRAKGRETL
IINKYGDRVLVYRPDHETDDSRRRPTSRRAPRDSSDEYETTAKLNIPEEV
KERLRERMQNERHSQHNRSAEHSLSPRRFSPERDRQRDRDRGRDRHRDRR
RERARERSPFNSSSRRRSRSHSPDWSDDHRSSKRRRHAHYESVPWDRGSD
SPKHDDPPVKSRADEEELPPRRPRRRGGRSRKRARANGNQQGSAAVNDKA
DAPSDRRNSRRQRSSRR*
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spliced messenger RNA

>Gvermi6359.t1 ID=Gvermi6359.t1|Name=Gvermi6359.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=954bp|location=Sequence derived from alignment at ScGOVlb_88:267037..268629+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atggccgccgtggccCTCAACAACCTGCCGTGGTGGACATCCGACGCCGA
CGTCGAGGCGTTCTGCGCCCTAGCGCACGCCGAAGCGCAGCGCGCCATCG
CCGCCGTGCGCTTTGCCGTTGATCCCGCCTGCGGCAAGAGCCTCGGTCGC
GTCGCCATCGCCCTCTCCGCCCCCGATCTGGCCGAGCCGCTCCGCGCTGC
GCTCGCCGAAAACCCCCCGCCCTCCGCGTCCCCTGCCGCCCCCGTCACCc
cggacgccgaacgcgcgcgctctcaccgcgcaaaggggcgaGAGACGCTC
ATTATCAACAAGTACGGCGATCGCGTTCTCGTGTACCGCCCAGACCATGA
AACTGACGACTCCCGCCGTCGCCCCACTTCGCGTAGAGCGCCGCGTGACT
CTTCTGACGAGTATGAAACAACCGCAAAGCTCAACATCCCGGAGGAGGTG
AAGGAGCGTCTGCGCGAGCGCATGCAAAATGAGAGGCATTCGCAACATAA
TCGCTCCGCTGAGCACTCGCTGTCGCCGCGTCGCTTTTCGccggaacgcg
atcgacagcgagacagggaccgcggccgagaccgccatcgcgaccgtcga
cgagagcgcgcacgcgagcgcTCCCCGTTCAATTCCTCGTCGCGCCGCCG
CTCTAGATCCCATTCACCGGATTGGTCTGATGACCATCGCAGCTCGAAAC
GTCGTCGCCACGCGCACTATGAGTCTGTGCCGTGGGATCGGGGCTCTGAT
TCACCCAAGCACGATGACCCCCCAGTCAAGAGTCGTGCCGATGAGGAGGA
GCTCCCGCCGCGGAGGCCGCGGAGAAGAGGGGGTCGGTCGAGGAAGCGCG
CGCGGGCAAACGGAAATCAACAGGGTTCCGCTGCGGTCAATGACAAAGCT
GATGCACCATCAGACAGGCGGAACTCAAGACGACAACGGTCCTCGAGGCG
GTGA
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protein sequence of Gvermi6359.t1

>Gvermi6359.t1 ID=Gvermi6359.t1|Name=Gvermi6359.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=318bp
MAAVALNNLPWWTSDADVEAFCALAHAEAQRAIAAVRFAVDPACGKSLGR
VAIALSAPDLAEPLRAALAENPPPSASPAAPVTPDAERARSHRAKGRETL
IINKYGDRVLVYRPDHETDDSRRRPTSRRAPRDSSDEYETTAKLNIPEEV
KERLRERMQNERHSQHNRSAEHSLSPRRFSPERDRQRDRDRGRDRHRDRR
RERARERSPFNSSSRRRSRSHSPDWSDDHRSSKRRRHAHYESVPWDRGSD
SPKHDDPPVKSRADEEELPPRRPRRRGGRSRKRARANGNQQGSAAVNDKA
DAPSDRRNSRRQRSSRR*
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mRNA from alignment at ScGOVlb_88:267037..268629+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6359.t1 ID=Gvermi6359.t1|Name=Gvermi6359.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at ScGOVlb_88:267037..268629+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggccgccgtggccCTCAACAACCTGCCGTGGTGGACATCCGACGCCGA
CGTCGAGGCGTTCTGCGCCCTAGCGCACGCCGAAGCGCAGCGCGCCATCG
CCGCCGTGCGCTTTGCCGTTGATCCCGCCTGCGGCAAGAGCCTCGGTCGC
GTCGCCATCGCCCTCTCCGCCCCCGATCTGGCCGAGCCGCTCCGCGCTGC
GCTCGCCGAAAACCCCCCGCCCTCCGCGTCCCCTGCCGCCCCCGTCACCG
TCACCGTGCTGTCGCCCGCCCAGGTCGACGCCTTCCTGTACCCCCCTCAG
CGCAAGCCGCACTCCCCGCCGCGCCCCGGTTTTCACGGCCACATGCCGCC
CTTCCCCCCCCGCAACATGTTCCCCCCCGCCATGCCGCCCATGCCGCACA
ACATGCCGCCCAACATGCCCCCCCCGCCGCGCTTCATGCCCCCTCACCCG
TTCATGTGGCTGCCGCCCAACCACCCACAGCACCAAcagcagcagcgcca
gcagcagcgccagcagcagcgtcagcagcagcagcgtcagcagcagcagc
gccagcagcatccgcgtcagccacagcagccgcgcccaccgccgccgcag
cagcagcgcccaccgccgccgcagcagcagcgcccaccgccgccgcagca
gcagcgcccgccgcagcccgccgctgagcgaccgcatcatcgcccgcccg
cgccgcacgacgcgcagcatccgccctcaccgcgccccacttcacgcccc
cgccgctccaagtccccgtcgcaatcgccgccgttaagtgaccattcgcc
gcaccgttcatcaccacggcactcaccgcgtcgctcgccgcgtcgctccg
cttctccctcccgctcgcgccgccgccactccccgcagccggacgccgaa
cgcgcgcgctctcaccgcgcaaaggggcgaGAGACGCTCATTATCAACAA
GTACGGCGATCGCGTTCTCGTGTACCGCCCAGACCATGAAACTGACGACT
CCCGCCGTCGCCCCACTTCGCGTAGAGCGCCGCGTGACTCTTCTGACGAG
TATGAAACAACCGCAAAGCTCAACATCCCGGAGGAGGTGAAGGAGCGTCT
GCGCGAGCGCATGCAAAATGAGAGGCATTCGCAACATAATCGCTCCGCTG
AGCACTCGCTGTCGCCGCGTCGCTTTTCGccggaacgcgatcgacagcga
gacagggaccgcggccgagaccgccatcgcgaccgtcgacgagagcgcgc
acgcgagcgcTCCCCGTTCAATTCCTCGTCGCGCCGCCGCTCTAGATCCC
ATTCACCGGATTGGTCTGATGACCATCGCAGCTCGAAACGTCGTCGCCAC
GCGCACTATGAGTCTGTGCCGTGGGATCGGGGCTCTGATTCACCCAAGCA
CGATGACCCCCCAGTCAAGAGTCGTGCCGATGAGGAGGAGCTCCCGCCGC
GGAGGCCGCGGAGAAGAGGGGGTCGGTCGAGGAAGCGCGCGCGGGCAAAC
GGAAATCAACAGGGTTCCGCTGCGGTCAATGACAAAGCTGATGCACCATC
AGACAGGCGGAACTCAAGACGACAACGGTCCTCGAGGCGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:267037..268629+

>Gvermi6359.t1 ID=Gvermi6359.t1|Name=Gvermi6359.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=954bp|location=Sequence derived from alignment at ScGOVlb_88:267037..268629+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggccgccgtggccCTCAACAACCTGCCGTGGTGGACATCCGACGCCGA
CGTCGAGGCGTTCTGCGCCCTAGCGCACGCCGAAGCGCAGCGCGCCATCG
CCGCCGTGCGCTTTGCCGTTGATCCCGCCTGCGGCAAGAGCCTCGGTCGC
GTCGCCATCGCCCTCTCCGCCCCCGATCTGGCCGAGCCGCTCCGCGCTGC
GCTCGCCGAAAACCCCCCGCCCTCCGCGTCCCCTGCCGCCCCCGTCACCc
cggacgccgaacgcgcgcgctctcaccgcgcaaaggggcgaGAGACGCTC
ATTATCAACAAGTACGGCGATCGCGTTCTCGTGTACCGCCCAGACCATGA
AACTGACGACTCCCGCCGTCGCCCCACTTCGCGTAGAGCGCCGCGTGACT
CTTCTGACGAGTATGAAACAACCGCAAAGCTCAACATCCCGGAGGAGGTG
AAGGAGCGTCTGCGCGAGCGCATGCAAAATGAGAGGCATTCGCAACATAA
TCGCTCCGCTGAGCACTCGCTGTCGCCGCGTCGCTTTTCGccggaacgcg
atcgacagcgagacagggaccgcggccgagaccgccatcgcgaccgtcga
cgagagcgcgcacgcgagcgcTCCCCGTTCAATTCCTCGTCGCGCCGCCG
CTCTAGATCCCATTCACCGGATTGGTCTGATGACCATCGCAGCTCGAAAC
GTCGTCGCCACGCGCACTATGAGTCTGTGCCGTGGGATCGGGGCTCTGAT
TCACCCAAGCACGATGACCCCCCAGTCAAGAGTCGTGCCGATGAGGAGGA
GCTCCCGCCGCGGAGGCCGCGGAGAAGAGGGGGTCGGTCGAGGAAGCGCG
CGCGGGCAAACGGAAATCAACAGGGTTCCGCTGCGGTCAATGACAAAGCT
GATGCACCATCAGACAGGCGGAACTCAAGACGACAACGGTCCTCGAGGCG
GTGA
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