Gvermi6117.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6117.t1
Unique Name	Gvermi6117.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:2586969..2588024 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMO347CT
PFAMs	JAB,Myb_DNA-binding,PWWP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11865,ko:K12133
KEGG Pathway	ko04712,map04712
Evalue	6.05e-23
EggNOG OGs	COG1310@1\|root,KOG0724@1\|root,KOG0724@2759\|Eukaryota,KOG1555@2759\|Eukaryota
Description	metallopeptidase activity
COG category	ADK
BRITE	ko00000,ko00001,ko01002,ko03000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6117	Gvermi6117	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1708 2586969..2588024 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6117.t1.start1	Gvermi6117.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1708 2586969..2586971 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6117.t1.CDS1	Gvermi6117.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1708 2586969..2588024 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6117.t1.exon1	Gvermi6117.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1708 2586969..2588024 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6117.t1.stop1	Gvermi6117.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1708 2588022..2588024 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6117.t1	Gvermi6117.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1708 2586969..2588024 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1708:2586969..2588024+
coding sequence from alignment at ScGOVlb_1708:2586969..2588024+

mRNA sequence

>Gvermi6117.t1 ID=Gvermi6117.t1|Name=Gvermi6117.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=352bp
MSREHPELIDLTDVAAQPLRRSTRNRKQTEPFTIHVDQRTASNSSDREQR
LEQLPYCTAEELGIDPLSVPYIRVHPVALALITFHAHLTKTEIIGYLGGF
VTRVGSRPEILVAEAFPARQVKPSDLAKTGRSAFTEVEALPESTIEIANR
VEAKGMRVVGWYHSHPDEKFTTEPSRVDIENQQNYQQHVYKDDPFVAAII
APYNDQLPDHHPDIQFFRVSAQQAPLQMPYEVCYARLAQHLHPLTPHDIT
FPLDAFMGECYNLISEYSAFGRRVRLDKEWRHQVMGFVKLKRALHEIVQS
AQPSEQERLYRSAVDALVLAVEDAWKDSSAQESERRRQNSAKRRKKRSRR
W*

spliced messenger RNA

>Gvermi6117.t1 ID=Gvermi6117.t1|Name=Gvermi6117.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at ScGOVlb_1708:2586969..2588024+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCGAGCACCCCGAGCTCATCGATCTCACCGACGTAGCCGCGCA
GCCGCTCCGTCGCTCCACCAGGAACCGCAAGCAGACAGAGCCCTTCACCA
TCCACGTTGACCAGCGCACCGCGTCCAACTCGTCCGACCGCGAGCAACGC
CTGGAGCAGCTCCCATATTGCACCGCCGAGGAGCTTGGCATCGACCCGCT
CTCCGTCCCGTACATTCGCGTGCACCCCGTTGCCCTCGCCTTGATCACCT
TCCACGCCCACCTCACCAAAACCGAAATCATCGGCTACCTCGGCGGCTTT
GTCACGCGCGTCGGCTCGCGCCCCGAGATTTTGGTCGCGGAGGCCTTTCC
GGCGCGTCAGGTCAAGCCCAGCGATTTGGCCAAGACGGGGCGCTCCGCGT
TCACCGAGGTGGAGGCCTTGCCGGAGAGCACCATAGAAATCGCCAACCGC
GTCGAGGCTAAGGGAATGCGTGTTGTCGGTTGGTACCACAGCCACCCCGA
CGAAAAATTCACCACCGAACCGTCTCGAGTGGACATTGAGAACCAACAAA
ACTACCAACAACACGTTTACAAGGACGATCCGTTTGTCGCCGCCATCATT
GCGCCTTACAATGATCAGCTTCCGGATCATCATCCGGACATTCAGTTTTT
CCGCGTCTCTGCTCAGCAAGCGCCTTTGCAGATGCCCTACGAGGTTTGCT
ACGCGCGACTTGCACAGCATTTGCATCCGTTAACACCGCACGACATCACT
TTCCCATTGGATGCGTTTATGGGAGAGTGCTACAACTTGATTTCCGAGTA
TTCTGCGTTCGGTCGCCGCGTACGATTGGACAAGGAATGGAGGCATCAGG
TCATGGGCTTCGTCAAACTCAAACGTGCTCTACATGAGATCGTGCAATCT
GCCCAACCCTCTGAGCAAGAGCGGCTGTATCGTTCTGCTGTAGATGCGCT
TGTGTTGGCCGTCGAAGACGCATGGAAGGATAGTTCCGCGCAAGAATCAG
AGCGGAGGAGACAAAATTCCGCCAAGAGGCGCAAGAAGCGAAGCCGACGA
TGGTAG

protein sequence of Gvermi6117.t1

>Gvermi6117.t1 ID=Gvermi6117.t1|Name=Gvermi6117.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=352bp
MSREHPELIDLTDVAAQPLRRSTRNRKQTEPFTIHVDQRTASNSSDREQR
LEQLPYCTAEELGIDPLSVPYIRVHPVALALITFHAHLTKTEIIGYLGGF
VTRVGSRPEILVAEAFPARQVKPSDLAKTGRSAFTEVEALPESTIEIANR
VEAKGMRVVGWYHSHPDEKFTTEPSRVDIENQQNYQQHVYKDDPFVAAII
APYNDQLPDHHPDIQFFRVSAQQAPLQMPYEVCYARLAQHLHPLTPHDIT
FPLDAFMGECYNLISEYSAFGRRVRLDKEWRHQVMGFVKLKRALHEIVQS
AQPSEQERLYRSAVDALVLAVEDAWKDSSAQESERRRQNSAKRRKKRSRR
W*

mRNA from alignment at ScGOVlb_1708:2586969..2588024+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6117.t1 ID=Gvermi6117.t1|Name=Gvermi6117.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at ScGOVlb_1708:2586969..2588024+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGCGAGCACCCCGAGCTCATCGATCTCACCGACGTAGCCGCGCA
GCCGCTCCGTCGCTCCACCAGGAACCGCAAGCAGACAGAGCCCTTCACCA
TCCACGTTGACCAGCGCACCGCGTCCAACTCGTCCGACCGCGAGCAACGC
CTGGAGCAGCTCCCATATTGCACCGCCGAGGAGCTTGGCATCGACCCGCT
CTCCGTCCCGTACATTCGCGTGCACCCCGTTGCCCTCGCCTTGATCACCT
TCCACGCCCACCTCACCAAAACCGAAATCATCGGCTACCTCGGCGGCTTT
GTCACGCGCGTCGGCTCGCGCCCCGAGATTTTGGTCGCGGAGGCCTTTCC
GGCGCGTCAGGTCAAGCCCAGCGATTTGGCCAAGACGGGGCGCTCCGCGT
TCACCGAGGTGGAGGCCTTGCCGGAGAGCACCATAGAAATCGCCAACCGC
GTCGAGGCTAAGGGAATGCGTGTTGTCGGTTGGTACCACAGCCACCCCGA
CGAAAAATTCACCACCGAACCGTCTCGAGTGGACATTGAGAACCAACAAA
ACTACCAACAACACGTTTACAAGGACGATCCGTTTGTCGCCGCCATCATT
GCGCCTTACAATGATCAGCTTCCGGATCATCATCCGGACATTCAGTTTTT
CCGCGTCTCTGCTCAGCAAGCGCCTTTGCAGATGCCCTACGAGGTTTGCT
ACGCGCGACTTGCACAGCATTTGCATCCGTTAACACCGCACGACATCACT
TTCCCATTGGATGCGTTTATGGGAGAGTGCTACAACTTGATTTCCGAGTA
TTCTGCGTTCGGTCGCCGCGTACGATTGGACAAGGAATGGAGGCATCAGG
TCATGGGCTTCGTCAAACTCAAACGTGCTCTACATGAGATCGTGCAATCT
GCCCAACCCTCTGAGCAAGAGCGGCTGTATCGTTCTGCTGTAGATGCGCT
TGTGTTGGCCGTCGAAGACGCATGGAAGGATAGTTCCGCGCAAGAATCAG
AGCGGAGGAGACAAAATTCCGCCAAGAGGCGCAAGAAGCGAAGCCGACGA
TGGTAG

Coding sequence (CDS) from alignment at ScGOVlb_1708:2586969..2588024+

>Gvermi6117.t1 ID=Gvermi6117.t1|Name=Gvermi6117.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1056bp|location=Sequence derived from alignment at ScGOVlb_1708:2586969..2588024+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGCGAGCACCCCGAGCTCATCGATCTCACCGACGTAGCCGCGCA
GCCGCTCCGTCGCTCCACCAGGAACCGCAAGCAGACAGAGCCCTTCACCA
TCCACGTTGACCAGCGCACCGCGTCCAACTCGTCCGACCGCGAGCAACGC
CTGGAGCAGCTCCCATATTGCACCGCCGAGGAGCTTGGCATCGACCCGCT
CTCCGTCCCGTACATTCGCGTGCACCCCGTTGCCCTCGCCTTGATCACCT
TCCACGCCCACCTCACCAAAACCGAAATCATCGGCTACCTCGGCGGCTTT
GTCACGCGCGTCGGCTCGCGCCCCGAGATTTTGGTCGCGGAGGCCTTTCC
GGCGCGTCAGGTCAAGCCCAGCGATTTGGCCAAGACGGGGCGCTCCGCGT
TCACCGAGGTGGAGGCCTTGCCGGAGAGCACCATAGAAATCGCCAACCGC
GTCGAGGCTAAGGGAATGCGTGTTGTCGGTTGGTACCACAGCCACCCCGA
CGAAAAATTCACCACCGAACCGTCTCGAGTGGACATTGAGAACCAACAAA
ACTACCAACAACACGTTTACAAGGACGATCCGTTTGTCGCCGCCATCATT
GCGCCTTACAATGATCAGCTTCCGGATCATCATCCGGACATTCAGTTTTT
CCGCGTCTCTGCTCAGCAAGCGCCTTTGCAGATGCCCTACGAGGTTTGCT
ACGCGCGACTTGCACAGCATTTGCATCCGTTAACACCGCACGACATCACT
TTCCCATTGGATGCGTTTATGGGAGAGTGCTACAACTTGATTTCCGAGTA
TTCTGCGTTCGGTCGCCGCGTACGATTGGACAAGGAATGGAGGCATCAGG
TCATGGGCTTCGTCAAACTCAAACGTGCTCTACATGAGATCGTGCAATCT
GCCCAACCCTCTGAGCAAGAGCGGCTGTATCGTTCTGCTGTAGATGCGCT
TGTGTTGGCCGTCGAAGACGCATGGAAGGATAGTTCCGCGCAAGAATCAG
AGCGGAGGAGACAAAATTCCGCCAAGAGGCGCAAGAAGCGAAGCCGACGA
TGGTAG