Gvermi6115.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6115.t1
Unique NameGvermi6115.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:2583313..2584436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6115Gvermi6115Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 2583313..2584436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6115.t1Gvermi6115.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 2583313..2584436 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6115.t1.stop1Gvermi6115.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 2583313..2583315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6115.t1.CDS1Gvermi6115.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 2583313..2583530 -
Gvermi6115.t1.CDS2Gvermi6115.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 2583614..2584436 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6115.t1.exon1Gvermi6115.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 2583313..2583530 -
Gvermi6115.t1.exon2Gvermi6115.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 2583614..2584436 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6115.t1.intron1Gvermi6115.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1708 2583531..2583613 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6115.t1.start1Gvermi6115.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 2584434..2584436 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6115.t1 ID=Gvermi6115.t1|Name=Gvermi6115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=347bp
MGSLSNLLMLAFLALCPLASPVVVKRLGANEIELVLRKAFGAFQKQSMAS
SKHFASHKPGGGVHRSLTPTPPSKYNYNTKFFSKPTFNLIFNKTIHEDAP
QNVYDANADAVREALDYLDNTMFPGTTFASNQFAQKLLEAFQKEEGAIFY
SLKTQKWAFCAWVDLFTGVYYMRLCASLTTFGLEDVERDPIPNKDYVTEI
EMERMIYKGHVQTIDGNNTVSSTEYANTPLTTRNKISSYGDKKQKAEAFL
PNAIRQNDVIDVDLSASADTYERTFRTKVYMTTVMRFAVIRSTLDLYIVL
GFPSSVSKRETCTTHEDLQSLNPWSLDMSPGNNNEDDHISKVHAHV*
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spliced messenger RNA

>Gvermi6115.t1 ID=Gvermi6115.t1|Name=Gvermi6115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at ScGOVlb_1708:2583313..2584436- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATCATTATCTAACCTTTTGATGCTTGCTTTCCTGGCACTTTGTCC
TTTAGCGTCTCCTGTGGTTGTTAAGCGACTCGGGGCAAACGAAATTGAAC
TCGTTCTCCGGAAAGCTTTTGGTGCTTTCCAAAAACAAAGCATGGCGAGC
TCTAAGCATTTTGCATCTCATAAACCGGGCGGAGGAGTGCATCGCTCTCT
CACCCCAACCCCACCATCAAAATATAATTACAATACGAAGTTCTTCAGCA
AACCTACATTCAATTTGATCTTTAACAAAACAATCCATGAAGATGCACCC
CAAAACGTTTACGATGCTAACGCCGACGCTGTTCGTGAAGCTCTGGACTA
TCTCGATAATACTATGTTTCCGGGAACGACTTTCGCATCCAATCAGTTTG
CACAAAAGCTTCTTGAGGCGTTTCAAAAGGAAGAAGGAGCCATTTTTTAC
AGCCTCAAGACACAAAAGTGGGCATTTTGTGCATGGGTTGATCTTTTCAC
TGGTGTGTATTATATGCGGTTGTGTGCATCTTTAACCACATTTGGGCTCG
AAGATGTTGAAAGGGACCCAATTCCAAACAAAGACTACGTCACAGAGATA
GAAATGGAACGTATGATTTACAAGGGCCACGTTCAAACCATCGATGGCAA
TAACACGGTATCTTCAACAGAATACGCGAATACCCCGCTCACCACCCGCA
ACAAAATTTCCTCTTACGGCGATAAGAAACAGAAAGCAGAAGCCTTCCTT
CCCAATGCCATAAGACAGAATGACGTCATTGACGTTGATCTTTCAGCGTC
TGCCGATACGTACGAACGGACATTTCGGACAAAAGTATACATGACGACTG
TTATGCGTTTTGCTGTCATTCGCTCTACATTGGATCTTTATATTGTGCTG
GGTTTCCCCTCCAGTGTGTCTAAGCGTGAAACATGCACGACCCATGAGGA
TCTTCAATCTCTGAATCCATGGAGCTTGGATATGTCTCCTGGTAATAACA
ACGAAGACGATCACATTTCTAAAGTTCATGCTCACGTTTAA
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protein sequence of Gvermi6115.t1

>Gvermi6115.t1 ID=Gvermi6115.t1|Name=Gvermi6115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=347bp
MGSLSNLLMLAFLALCPLASPVVVKRLGANEIELVLRKAFGAFQKQSMAS
SKHFASHKPGGGVHRSLTPTPPSKYNYNTKFFSKPTFNLIFNKTIHEDAP
QNVYDANADAVREALDYLDNTMFPGTTFASNQFAQKLLEAFQKEEGAIFY
SLKTQKWAFCAWVDLFTGVYYMRLCASLTTFGLEDVERDPIPNKDYVTEI
EMERMIYKGHVQTIDGNNTVSSTEYANTPLTTRNKISSYGDKKQKAEAFL
PNAIRQNDVIDVDLSASADTYERTFRTKVYMTTVMRFAVIRSTLDLYIVL
GFPSSVSKRETCTTHEDLQSLNPWSLDMSPGNNNEDDHISKVHAHV*
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mRNA from alignment at ScGOVlb_1708:2583313..2584436-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6115.t1 ID=Gvermi6115.t1|Name=Gvermi6115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1124bp|location=Sequence derived from alignment at ScGOVlb_1708:2583313..2584436- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGATCATTATCTAACCTTTTGATGCTTGCTTTCCTGGCACTTTGTCC
TTTAGCGTCTCCTGTGGTTGTTAAGCGACTCGGGGCAAACGAAATTGAAC
TCGTTCTCCGGAAAGCTTTTGGTGCTTTCCAAAAACAAAGCATGGCGAGC
TCTAAGCATTTTGCATCTCATAAACCGGGCGGAGGAGTGCATCGCTCTCT
CACCCCAACCCCACCATCAAAATATAATTACAATACGAAGTTCTTCAGCA
AACCTACATTCAATTTGATCTTTAACAAAACAATCCATGAAGATGCACCC
CAAAACGTTTACGATGCTAACGCCGACGCTGTTCGTGAAGCTCTGGACTA
TCTCGATAATACTATGTTTCCGGGAACGACTTTCGCATCCAATCAGTTTG
CACAAAAGCTTCTTGAGGCGTTTCAAAAGGAAGAAGGAGCCATTTTTTAC
AGCCTCAAGACACAAAAGTGGGCATTTTGTGCATGGGTTGATCTTTTCAC
TGGTGTGTATTATATGCGGTTGTGTGCATCTTTAACCACATTTGGGCTCG
AAGATGTTGAAAGGGACCCAATTCCAAACAAAGACTACGTCACAGAGATA
GAAATGGAACGTATGATTTACAAGGGCCACGTTCAAACCATCGATGGCAA
TAACACGGTATCTTCAACAGAATACGCGAATACCCCGCTCACCACCCGCA
ACAAAATTTCCTCTTACGGCGATAAGAAACAGAAAGCAGAAGCCTTCCTT
CCCAATGCCATAAGACAGAATGACGTCATTGACGTTGATCTTTCAGCGTC
TGCCGATACGTACGAACGGACATGTAAGTAATCGCTTATTTTCATCATCC
TTTGGTCTCAGGTTGTGCTAACTGTCTTCTCTTTAAACCAATGAAACAGG
TTTGAGTTCGGACAAAAGTATACATGACGACTGTTATGCGTTTTGCTGTC
ATTCGCTCTACATTGGATCTTTATATTGTGCTGGGTTTCCCCTCCAGTGT
GTCTAAGCGTGAAACATGCACGACCCATGAGGATCTTCAATCTCTGAATC
CATGGAGCTTGGATATGTCTCCTGGTAATAACAACGAAGACGATCACATT
TCTAAAGTTCATGCTCACGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:2583313..2584436-

>Gvermi6115.t1 ID=Gvermi6115.t1|Name=Gvermi6115.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1041bp|location=Sequence derived from alignment at ScGOVlb_1708:2583313..2584436- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGATCATTATCTAACCTTTTGATGCTTGCTTTCCTGGCACTTTGTCC
TTTAGCGTCTCCTGTGGTTGTTAAGCGACTCGGGGCAAACGAAATTGAAC
TCGTTCTCCGGAAAGCTTTTGGTGCTTTCCAAAAACAAAGCATGGCGAGC
TCTAAGCATTTTGCATCTCATAAACCGGGCGGAGGAGTGCATCGCTCTCT
CACCCCAACCCCACCATCAAAATATAATTACAATACGAAGTTCTTCAGCA
AACCTACATTCAATTTGATCTTTAACAAAACAATCCATGAAGATGCACCC
CAAAACGTTTACGATGCTAACGCCGACGCTGTTCGTGAAGCTCTGGACTA
TCTCGATAATACTATGTTTCCGGGAACGACTTTCGCATCCAATCAGTTTG
CACAAAAGCTTCTTGAGGCGTTTCAAAAGGAAGAAGGAGCCATTTTTTAC
AGCCTCAAGACACAAAAGTGGGCATTTTGTGCATGGGTTGATCTTTTCAC
TGGTGTGTATTATATGCGGTTGTGTGCATCTTTAACCACATTTGGGCTCG
AAGATGTTGAAAGGGACCCAATTCCAAACAAAGACTACGTCACAGAGATA
GAAATGGAACGTATGATTTACAAGGGCCACGTTCAAACCATCGATGGCAA
TAACACGGTATCTTCAACAGAATACGCGAATACCCCGCTCACCACCCGCA
ACAAAATTTCCTCTTACGGCGATAAGAAACAGAAAGCAGAAGCCTTCCTT
CCCAATGCCATAAGACAGAATGACGTCATTGACGTTGATCTTTCAGCGTC
TGCCGATACGTACGAACGGACATTTCGGACAAAAGTATACATGACGACTG
TTATGCGTTTTGCTGTCATTCGCTCTACATTGGATCTTTATATTGTGCTG
GGTTTCCCCTCCAGTGTGTCTAAGCGTGAAACATGCACGACCCATGAGGA
TCTTCAATCTCTGAATCCATGGAGCTTGGATATGTCTCCTGGTAATAACA
ACGAAGACGATCACATTTCTAAAGTTCATGCTCACGTTTAA
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