Gvermi6028.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6028.t1
Unique NameGvermi6028.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1820377..1821378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog883112.HMPREF9707_00503
Preferred nameclpB
PFAMsAAA,AAA_2,ClpB_D2-small,Clp_N
Max annot lvl91061|Bacilli
KEGG koko:K03695
KEGG Pathwayko04213,map04213
GOsGO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0043170,GO:0044238,GO:0071704,GO:1901564
Evalue1.15e-23
EggNOG OGsCOG0542@1|root,COG0542@2|Bacteria,1TPMU@1239|Firmicutes,4HACY@91061|Bacilli,27DN1@186827|Aerococcaceae
DescriptionPart of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6028Gvermi6028Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 1820377..1821378 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6028.t1.stop1Gvermi6028.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 1820377..1820379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6028.t1.CDS1Gvermi6028.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1820377..1821378 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6028.t1.exon1Gvermi6028.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1820377..1821378 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6028.t1.start1Gvermi6028.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 1821376..1821378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6028.t1Gvermi6028.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 1820377..1821378 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6028.t1 ID=Gvermi6028.t1|Name=Gvermi6028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=334bp
MEGENDQLSLSSGNRDAFEQLLAYPYVYCISDRVQDNVSFPFEGYDEVLD
ETLQAISKGNSVLLVGEPGIGKRSVSLGLARRLKSMKTDAKNPIYSRSVY
TLSLGNYFWSGDSEDARQMQQSISEVLSQVERAGPEHIVLCIDDVDIFGF
VDRIVSEGDQANKEQHPISLENMLRFLLFDKKVICLCTCIRSAYKRLIES
DTYYDEKFTKAFRVIHMKPPNVSISLRIVAAHKTRIEQEHQVSITDGAIA
ASVMCADQYVTHRALPEKALDILTEACDVARSRIGDGEGSEESSTSTSVS
VKRSHVERLIYNWCGVTVRQTGEYLSSTSTSNT*
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spliced messenger RNA

>Gvermi6028.t1 ID=Gvermi6028.t1|Name=Gvermi6028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_1708:1820377..1821378- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGAGAAAACGACCAGCTATCCCTTTCTTCTGGGAATCGTGATGC
ATTCGAGCAGCTTCTTGCTTATCCCTACGTTTACTGTATTTCAGACCGTG
TCCAGGACAACGTATCGTTTCCCTTTGAGGGATATGATGAAGTTCTTGAC
GAGACCCTTCAAGCCATTAGCAAAGGAAATTCTGTGCTCCTTGTAGGTGA
GCCTGGCATTGGCAAGCGTTCTGTATCTCTAGGTCTTGCTCGCCGTCTCA
AGTCGATGAAGACGGACGCCAAGAACCCTATATATTCTCGTAGTGTTTAC
ACATTATCGCTTGGAAATTACTTTTGGAGCGGGGATTCCGAAGACGCTCG
TCAAATGCAGCAAAGCATCAGCGAAGTTCTTTCGCAAGTAGAGCGAGCAG
GACCAGAACACATTGTACTGTGCATAGACGATGTGGATATCTTTGGTTTC
GTCGATCGAATTGTCAGTGAAGGAGACCAGGCGAACAAAGAGCAGCACCC
TATTTCGTTGGAGAACATGCTTCGATTTTTATTGTTCGACAAGAAAGTAA
TCTGCTTGTGCACTTGTATTCGAAGTGCTTACAAGAGATTGATAGAGTCC
GATACGTACTACGATGAGAAGTTCACCAAGGCATTCCGCGTGATTCACAT
GAAGCCTCCAAATGTATCTATATCACTGCGAATCGTGGCTGCACACAAAA
CACGTATCGAACAAGAACATCAAGTTTCTATCACAGATGGCGCGATTGCC
GCTTCTGTGATGTGTGCAGATCAATACGTCACCCATCGCGCGCTACCAGA
AAAAGCCCTTGATATTCTGACAGAAGCATGTGACGTGGCCCGCTCCAGAA
TAGGTGACGGGGAGGGCAGCGAAGAAAGTTCAACAAGCACAAGTGTGTCT
GTGAAAAGAAGCCATGTGGAACGTTTAATATATAATTGGTGTGGTGTAAC
GGTTCGACAAACAGGGGAGTATTTGAGTTCTACAAGCACGAGTAACACTT
AA
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protein sequence of Gvermi6028.t1

>Gvermi6028.t1 ID=Gvermi6028.t1|Name=Gvermi6028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=334bp
MEGENDQLSLSSGNRDAFEQLLAYPYVYCISDRVQDNVSFPFEGYDEVLD
ETLQAISKGNSVLLVGEPGIGKRSVSLGLARRLKSMKTDAKNPIYSRSVY
TLSLGNYFWSGDSEDARQMQQSISEVLSQVERAGPEHIVLCIDDVDIFGF
VDRIVSEGDQANKEQHPISLENMLRFLLFDKKVICLCTCIRSAYKRLIES
DTYYDEKFTKAFRVIHMKPPNVSISLRIVAAHKTRIEQEHQVSITDGAIA
ASVMCADQYVTHRALPEKALDILTEACDVARSRIGDGEGSEESSTSTSVS
VKRSHVERLIYNWCGVTVRQTGEYLSSTSTSNT*
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mRNA from alignment at ScGOVlb_1708:1820377..1821378-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6028.t1 ID=Gvermi6028.t1|Name=Gvermi6028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_1708:1820377..1821378- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGGAGAAAACGACCAGCTATCCCTTTCTTCTGGGAATCGTGATGC
ATTCGAGCAGCTTCTTGCTTATCCCTACGTTTACTGTATTTCAGACCGTG
TCCAGGACAACGTATCGTTTCCCTTTGAGGGATATGATGAAGTTCTTGAC
GAGACCCTTCAAGCCATTAGCAAAGGAAATTCTGTGCTCCTTGTAGGTGA
GCCTGGCATTGGCAAGCGTTCTGTATCTCTAGGTCTTGCTCGCCGTCTCA
AGTCGATGAAGACGGACGCCAAGAACCCTATATATTCTCGTAGTGTTTAC
ACATTATCGCTTGGAAATTACTTTTGGAGCGGGGATTCCGAAGACGCTCG
TCAAATGCAGCAAAGCATCAGCGAAGTTCTTTCGCAAGTAGAGCGAGCAG
GACCAGAACACATTGTACTGTGCATAGACGATGTGGATATCTTTGGTTTC
GTCGATCGAATTGTCAGTGAAGGAGACCAGGCGAACAAAGAGCAGCACCC
TATTTCGTTGGAGAACATGCTTCGATTTTTATTGTTCGACAAGAAAGTAA
TCTGCTTGTGCACTTGTATTCGAAGTGCTTACAAGAGATTGATAGAGTCC
GATACGTACTACGATGAGAAGTTCACCAAGGCATTCCGCGTGATTCACAT
GAAGCCTCCAAATGTATCTATATCACTGCGAATCGTGGCTGCACACAAAA
CACGTATCGAACAAGAACATCAAGTTTCTATCACAGATGGCGCGATTGCC
GCTTCTGTGATGTGTGCAGATCAATACGTCACCCATCGCGCGCTACCAGA
AAAAGCCCTTGATATTCTGACAGAAGCATGTGACGTGGCCCGCTCCAGAA
TAGGTGACGGGGAGGGCAGCGAAGAAAGTTCAACAAGCACAAGTGTGTCT
GTGAAAAGAAGCCATGTGGAACGTTTAATATATAATTGGTGTGGTGTAAC
GGTTCGACAAACAGGGGAGTATTTGAGTTCTACAAGCACGAGTAACACTT
AA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:1820377..1821378-

>Gvermi6028.t1 ID=Gvermi6028.t1|Name=Gvermi6028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1002bp|location=Sequence derived from alignment at ScGOVlb_1708:1820377..1821378- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGGAGAAAACGACCAGCTATCCCTTTCTTCTGGGAATCGTGATGC
ATTCGAGCAGCTTCTTGCTTATCCCTACGTTTACTGTATTTCAGACCGTG
TCCAGGACAACGTATCGTTTCCCTTTGAGGGATATGATGAAGTTCTTGAC
GAGACCCTTCAAGCCATTAGCAAAGGAAATTCTGTGCTCCTTGTAGGTGA
GCCTGGCATTGGCAAGCGTTCTGTATCTCTAGGTCTTGCTCGCCGTCTCA
AGTCGATGAAGACGGACGCCAAGAACCCTATATATTCTCGTAGTGTTTAC
ACATTATCGCTTGGAAATTACTTTTGGAGCGGGGATTCCGAAGACGCTCG
TCAAATGCAGCAAAGCATCAGCGAAGTTCTTTCGCAAGTAGAGCGAGCAG
GACCAGAACACATTGTACTGTGCATAGACGATGTGGATATCTTTGGTTTC
GTCGATCGAATTGTCAGTGAAGGAGACCAGGCGAACAAAGAGCAGCACCC
TATTTCGTTGGAGAACATGCTTCGATTTTTATTGTTCGACAAGAAAGTAA
TCTGCTTGTGCACTTGTATTCGAAGTGCTTACAAGAGATTGATAGAGTCC
GATACGTACTACGATGAGAAGTTCACCAAGGCATTCCGCGTGATTCACAT
GAAGCCTCCAAATGTATCTATATCACTGCGAATCGTGGCTGCACACAAAA
CACGTATCGAACAAGAACATCAAGTTTCTATCACAGATGGCGCGATTGCC
GCTTCTGTGATGTGTGCAGATCAATACGTCACCCATCGCGCGCTACCAGA
AAAAGCCCTTGATATTCTGACAGAAGCATGTGACGTGGCCCGCTCCAGAA
TAGGTGACGGGGAGGGCAGCGAAGAAAGTTCAACAAGCACAAGTGTGTCT
GTGAAAAGAAGCCATGTGGAACGTTTAATATATAATTGGTGTGGTGTAAC
GGTTCGACAAACAGGGGAGTATTTGAGTTCTACAAGCACGAGTAACACTT
AA
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