Gvermi5906.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5906.t1
Unique NameGvermi5906.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:724745..725884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5906Gvermi5906Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 724745..725884 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5906.t1.stop1Gvermi5906.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 724745..724747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5906.t1.CDS1Gvermi5906.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 724745..725884 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5906.t1.exon1Gvermi5906.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 724745..725884 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5906.t1.start1Gvermi5906.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 725882..725884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5906.t1Gvermi5906.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 724745..725884 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5906.t1 ID=Gvermi5906.t1|Name=Gvermi5906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=380bp
LLRAPVRYAFYVASYGQFNNQLVSLINALYFARSLRAALVLPYTTLGKES
AADARLGHRSVNRVMNHQLVGDYFNYSRLLRLYPVIQPHIFFASPPAQRL
LARPNVTVSHRAGNYYRALFRTAVNSRAPPLRVISHRPPAPLPHPRYCLH
DARHEFRRHNGLGYDPHFALLPIIFFRHNLNCTATHPDWVSIRRFLVPND
VFLRPVHRFLHSVPRPLLSIHLRLFLNGDVPNTSAEAIVHSLFRRFAPQL
REVRTLFVAYSPSSPMSQHVFRLLAHRFHGHVVDGSTFKQFVHPHEKHVT
QLPLAPVLFDMWVCVRSRYFVGRLGSSLSWNVAMWRKALWHQYGLEQSIV
ESPLWYALEHFSTTGVTRNEGHIYGTTSA*
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spliced messenger RNA

>Gvermi5906.t1 ID=Gvermi5906.t1|Name=Gvermi5906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at ScGOVlb_1708:724745..725884- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGCGCGCCCCCGTGCGCTACGCCTTCTACGTCGCGTCCTACGGCCA
GTTCAACAACCAGCTCGTCTCGCTCATCAACGCCCTCTACTTCGCGCGCT
CCCTCCGCGCCGCCCTCGTCCTGCCCTACACCACCCTCGGCAAGGAGTCC
GCCGCCGACGCCCGCCTCGGCCACCGCTCCGTCAACCGCGTCATGAACCA
CCAGCTCGTGGGCGACTACTTCAACTACTCGCGCCTGCTCCGCCTCTACC
CCGTCATTCAGCCGCACATCTTCTTCGCCTCCCCCCCGGCCCAACGCCTG
CTTGCGCGCCCCAACGTCACCGTCTCGCACCGAGCCGGCAACTACTACCG
CGCTCTGTTCCGCACCGCCGTCAACTCCCGCGCGCCCCCGCTGCGAGTCA
TCTCGCACCGACCCCCCGCCCCCTTGCCGCACCCGCGCTACTGCCTGCAC
GACGCGCGCCACGAGTTTCGCCGCCACAACGGCCTGGGCTACGACCCGCA
CTTTGCCCTCCTGCCCATCATCTTCTTTCGCCACAACCTCAACTGCACCG
CCACCCACCCCGACTGGGTTTCCATTCGTCGCTTCCTCGTCCCCAACGAC
GTCTTCTTGCGCCCCGTGCACCGCTTCCTACACTCCGTGCCCCGCCCGCT
CCTGTCCATCCACCTGCGCCTGTTTCTCAACGGCGACGTGCCCAACACCT
CTGCCGAGGCCATTGTGCACTCACTCTTCCGCCGCTTTGCGCCTCAGTTG
CGCGAGGTCCGCACCTTGTTCGTGGCCTACTCGCCGAGTTCGCCCATGTC
GCAGCACGTGTTCCGCCTGCTCGCACACCGCTTTCACGGCCATGTCGTGG
ACGGCTCCACCTTCAAGCAGTTTGTCCACCCGCACGAGAAGCATGTTACC
CAACTCCCGCTGGCCCCCGTTCTGTTTGACATGTGGGTGTGTGTCCGCAG
TCGTTATTTTGTGGGCAGACTGGGTTCCAGTCTGTCCTGGAACGTCGCCA
TGTGGAGGAAGGCGCTTTGGCACCAATATGGTCTGGAGCAATCCATCGTT
GAGTCTCCCCTGTGGTATGCCCTGGAACATTTCTCAACCACCGGTGTTAC
TCGCAACGAAGGCCACATCTACGGCACTACGTCTGCTTAG
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protein sequence of Gvermi5906.t1

>Gvermi5906.t1 ID=Gvermi5906.t1|Name=Gvermi5906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=380bp
LLRAPVRYAFYVASYGQFNNQLVSLINALYFARSLRAALVLPYTTLGKES
AADARLGHRSVNRVMNHQLVGDYFNYSRLLRLYPVIQPHIFFASPPAQRL
LARPNVTVSHRAGNYYRALFRTAVNSRAPPLRVISHRPPAPLPHPRYCLH
DARHEFRRHNGLGYDPHFALLPIIFFRHNLNCTATHPDWVSIRRFLVPND
VFLRPVHRFLHSVPRPLLSIHLRLFLNGDVPNTSAEAIVHSLFRRFAPQL
REVRTLFVAYSPSSPMSQHVFRLLAHRFHGHVVDGSTFKQFVHPHEKHVT
QLPLAPVLFDMWVCVRSRYFVGRLGSSLSWNVAMWRKALWHQYGLEQSIV
ESPLWYALEHFSTTGVTRNEGHIYGTTSA*
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mRNA from alignment at ScGOVlb_1708:724745..725884-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5906.t1 ID=Gvermi5906.t1|Name=Gvermi5906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at ScGOVlb_1708:724745..725884- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTGCGCGCCCCCGTGCGCTACGCCTTCTACGTCGCGTCCTACGGCCA
GTTCAACAACCAGCTCGTCTCGCTCATCAACGCCCTCTACTTCGCGCGCT
CCCTCCGCGCCGCCCTCGTCCTGCCCTACACCACCCTCGGCAAGGAGTCC
GCCGCCGACGCCCGCCTCGGCCACCGCTCCGTCAACCGCGTCATGAACCA
CCAGCTCGTGGGCGACTACTTCAACTACTCGCGCCTGCTCCGCCTCTACC
CCGTCATTCAGCCGCACATCTTCTTCGCCTCCCCCCCGGCCCAACGCCTG
CTTGCGCGCCCCAACGTCACCGTCTCGCACCGAGCCGGCAACTACTACCG
CGCTCTGTTCCGCACCGCCGTCAACTCCCGCGCGCCCCCGCTGCGAGTCA
TCTCGCACCGACCCCCCGCCCCCTTGCCGCACCCGCGCTACTGCCTGCAC
GACGCGCGCCACGAGTTTCGCCGCCACAACGGCCTGGGCTACGACCCGCA
CTTTGCCCTCCTGCCCATCATCTTCTTTCGCCACAACCTCAACTGCACCG
CCACCCACCCCGACTGGGTTTCCATTCGTCGCTTCCTCGTCCCCAACGAC
GTCTTCTTGCGCCCCGTGCACCGCTTCCTACACTCCGTGCCCCGCCCGCT
CCTGTCCATCCACCTGCGCCTGTTTCTCAACGGCGACGTGCCCAACACCT
CTGCCGAGGCCATTGTGCACTCACTCTTCCGCCGCTTTGCGCCTCAGTTG
CGCGAGGTCCGCACCTTGTTCGTGGCCTACTCGCCGAGTTCGCCCATGTC
GCAGCACGTGTTCCGCCTGCTCGCACACCGCTTTCACGGCCATGTCGTGG
ACGGCTCCACCTTCAAGCAGTTTGTCCACCCGCACGAGAAGCATGTTACC
CAACTCCCGCTGGCCCCCGTTCTGTTTGACATGTGGGTGTGTGTCCGCAG
TCGTTATTTTGTGGGCAGACTGGGTTCCAGTCTGTCCTGGAACGTCGCCA
TGTGGAGGAAGGCGCTTTGGCACCAATATGGTCTGGAGCAATCCATCGTT
GAGTCTCCCCTGTGGTATGCCCTGGAACATTTCTCAACCACCGGTGTTAC
TCGCAACGAAGGCCACATCTACGGCACTACGTCTGCTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1708:724745..725884-

>Gvermi5906.t1 ID=Gvermi5906.t1|Name=Gvermi5906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1140bp|location=Sequence derived from alignment at ScGOVlb_1708:724745..725884- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTGCGCGCCCCCGTGCGCTACGCCTTCTACGTCGCGTCCTACGGCCA
GTTCAACAACCAGCTCGTCTCGCTCATCAACGCCCTCTACTTCGCGCGCT
CCCTCCGCGCCGCCCTCGTCCTGCCCTACACCACCCTCGGCAAGGAGTCC
GCCGCCGACGCCCGCCTCGGCCACCGCTCCGTCAACCGCGTCATGAACCA
CCAGCTCGTGGGCGACTACTTCAACTACTCGCGCCTGCTCCGCCTCTACC
CCGTCATTCAGCCGCACATCTTCTTCGCCTCCCCCCCGGCCCAACGCCTG
CTTGCGCGCCCCAACGTCACCGTCTCGCACCGAGCCGGCAACTACTACCG
CGCTCTGTTCCGCACCGCCGTCAACTCCCGCGCGCCCCCGCTGCGAGTCA
TCTCGCACCGACCCCCCGCCCCCTTGCCGCACCCGCGCTACTGCCTGCAC
GACGCGCGCCACGAGTTTCGCCGCCACAACGGCCTGGGCTACGACCCGCA
CTTTGCCCTCCTGCCCATCATCTTCTTTCGCCACAACCTCAACTGCACCG
CCACCCACCCCGACTGGGTTTCCATTCGTCGCTTCCTCGTCCCCAACGAC
GTCTTCTTGCGCCCCGTGCACCGCTTCCTACACTCCGTGCCCCGCCCGCT
CCTGTCCATCCACCTGCGCCTGTTTCTCAACGGCGACGTGCCCAACACCT
CTGCCGAGGCCATTGTGCACTCACTCTTCCGCCGCTTTGCGCCTCAGTTG
CGCGAGGTCCGCACCTTGTTCGTGGCCTACTCGCCGAGTTCGCCCATGTC
GCAGCACGTGTTCCGCCTGCTCGCACACCGCTTTCACGGCCATGTCGTGG
ACGGCTCCACCTTCAAGCAGTTTGTCCACCCGCACGAGAAGCATGTTACC
CAACTCCCGCTGGCCCCCGTTCTGTTTGACATGTGGGTGTGTGTCCGCAG
TCGTTATTTTGTGGGCAGACTGGGTTCCAGTCTGTCCTGGAACGTCGCCA
TGTGGAGGAAGGCGCTTTGGCACCAATATGGTCTGGAGCAATCCATCGTT
GAGTCTCCCCTGTGGTATGCCCTGGAACATTTCTCAACCACCGGTGTTAC
TCGCAACGAAGGCCACATCTACGGCACTACGTCTGCTTAG
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