Gvermi5879.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5879.t1
Unique Name	Gvermi5879.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	653

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:514083..516041 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	644107.SL1157_A0003
PFAMs	Fasciclin
Max annot lvl	28211\|Alphaproteobacteria
Evalue	6.71e-14
EggNOG OGs	COG2335@1\|root,COG2931@1\|root,COG2335@2\|Bacteria,COG2931@2\|Bacteria,1PFSZ@1224\|Proteobacteria,2U4ER@28211\|Alphaproteobacteria
Description	Beta-Ig-H3 fasciclin
COG category	MQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5879	Gvermi5879	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1708 514083..516041 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5879.t1.stop1	Gvermi5879.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1708 514083..514085 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5879.t1.CDS1	Gvermi5879.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1708 514083..516041 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5879.t1.exon1	Gvermi5879.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1708 514083..516041 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5879.t1.start1	Gvermi5879.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1708 516039..516041 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5879.t1	Gvermi5879.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1708 514083..516041 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1708:514083..516041-
coding sequence from alignment at ScGOVlb_1708:514083..516041-

mRNA sequence

>Gvermi5879.t1 ID=Gvermi5879.t1|Name=Gvermi5879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=653bp
MFTCLSAVLRFLSFLFILLSAKGVPQLLRDDCHNKTIFDIVVSENLSPTA
NFDKNGSNFNILANLLAAGNNEGLLNTSNAGGITLFAPNDDAIVRTAQDL
GYRGNDEYECYEYLISNLSRRYENPIEYLFNMPLYHIVAPSMNSTMVLEK
TSFETWDSGLPLHRIGLRLIDGNLELPDAELVPEMLDICTSNGYIHVINR
VLFAKPLAQPEERLKRQDEDIPCLEHSEEPLYSPEYDDLKTIDGLVAPTM
HTESHEEYGEHPKVGPIDINKPTLDPVSVPSHLPLPSWDFEYLGTPSETQ
SSEVNDSPEPTPHFIPSWNLNEPVILSPFPYETFDYNVDSSPSLDDNVSA
RPFPTLLEEYVPDSEFLTQTVQPSLLPVLPTDVSSNLKSTDPSEPDPTHL
DLFSTGPSPYFEELSPSTLPNFNFDIDPAAPSRESTAIIEGHFVESSTIP
EESFSSLLEGSPQETFDIEGTLDIFACFPRNAVVHLSHGKDIQVQDLQAG
HRVMSCESQSSAVYMFTHRTPVGLYPFVRIESVNNHTVELSPEHYIYANE
RLVVAERVEVGDRLRTLDGPSKVARISRVHRYGLYAPHTLHGDIVVGRIV
VSTYTNALPYWIAHPILEVLRLPVRLGITKEPIGGLLYNGCPKWKNLRTW
LF*

spliced messenger RNA

>Gvermi5879.t1 ID=Gvermi5879.t1|Name=Gvermi5879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1959bp|location=Sequence derived from alignment at ScGOVlb_1708:514083..516041- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACCTGCTTGTCTGCAGTACTACGTTTTCTATCTTTTCTTTTCAT
CTTGTTGAGCGCAAAAGGCGTTCCTCAGCTGTTACGAGATGACTGTCACA
ACAAAACGATCTTCGATATTGTAGTCAGCGAAAACTTATCTCCCACAGCT
AATTTCGACAAGAACGGATCCAATTTCAATATTCTAGCAAATCTTCTAGC
CGCTGGAAACAACGAGGGACTTTTAAACACCAGCAATGCAGGTGGAATCA
CATTATTTGCTCCCAACGACGACGCCATAGTGCGTACGGCTCAAGATTTA
GGTTACAGAGGAAATGACGAGTATGAATGTTACGAATATCTTATCTCCAA
CCTATCAAGACGATATGAGAACCCGATCGAATACCTCTTCAATATGCCTC
TGTACCACATTGTTGCTCCGAGCATGAATTCCACAATGGTCTTAGAAAAA
ACATCGTTTGAAACATGGGACTCTGGACTTCCCTTGCACCGCATTGGACT
TCGACTTATTGACGGAAATCTTGAGCTCCCAGATGCAGAACTTGTACCAG
AAATGCTGGACATATGCACATCAAATGGATACATTCACGTCATCAACAGA
GTTCTCTTTGCTAAACCATTGGCACAACCAGAAGAACGGCTGAAAAGGCA
AGATGAAGACATTCCTTGTCTAGAACATTCAGAAGAGCCACTTTATTCGC
CGGAATACGACGATTTGAAGACCATCGACGGTCTTGTCGCACCGACCATG
CATACTGAAAGTCACGAAGAATATGGGGAACACCCGAAGGTTGGTCCTAT
TGATATAAACAAACCCACATTGGATCCCGTTTCTGTCCCCTCTCATCTAC
CCTTGCCGTCGTGGGATTTTGAATACTTGGGTACTCCATCAGAAACGCAG
AGCTCAGAAGTGAATGATTCCCCAGAACCTACCCCGCACTTCATACCTTC
TTGGAACCTGAATGAACCTGTCATTTTGAGCCCTTTTCCGTACGAGACTT
TTGACTATAACGTCGATTCATCACCTTCATTGGATGACAACGTGAGCGCC
AGGCCCTTTCCGACTTTGTTGGAGGAATACGTACCAGACTCGGAATTCCT
AACACAAACTGTGCAACCATCACTTCTTCCAGTACTTCCAACTGATGTTT
CATCAAATTTGAAATCGACGGACCCATCTGAACCCGACCCCACTCATTTA
GACCTATTCTCGACTGGGCCGAGTCCATATTTTGAAGAACTTTCGCCCTC
AACGCTGCCTAATTTCAATTTCGACATTGATCCTGCTGCGCCGTCTCGTG
AAAGCACAGCTATCATAGAAGGGCACTTCGTAGAGAGCAGTACAATTCCT
GAAGAAAGCTTTTCTTCCCTTCTCGAAGGAAGCCCACAAGAGACTTTTGA
TATTGAAGGTACTCTAGACATTTTCGCATGCTTCCCAAGGAATGCCGTCG
TTCATTTATCTCACGGGAAAGATATTCAAGTACAAGATCTTCAAGCTGGT
CATCGTGTCATGTCCTGTGAGTCACAATCAAGCGCAGTATATATGTTTAC
CCACAGAACCCCGGTAGGATTATATCCGTTCGTTCGTATAGAATCAGTTA
ACAACCACACAGTTGAGCTTTCCCCTGAGCACTACATCTACGCAAACGAA
CGGTTGGTCGTTGCAGAAAGAGTTGAGGTGGGTGACAGACTCCGTACGCT
TGATGGACCTTCCAAAGTAGCCAGGATATCAAGGGTCCATAGATATGGCC
TGTATGCTCCGCACACTCTTCACGGTGACATTGTCGTCGGAAGAATCGTC
GTATCGACGTACACTAATGCTCTTCCCTATTGGATAGCACACCCAATCCT
TGAAGTACTCCGATTACCGGTGCGATTGGGTATTACCAAAGAACCCATAG
GTGGCCTTCTATACAATGGGTGCCCCAAGTGGAAGAACCTCAGAACGTGG
CTCTTTTGA

protein sequence of Gvermi5879.t1

>Gvermi5879.t1 ID=Gvermi5879.t1|Name=Gvermi5879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=653bp
MFTCLSAVLRFLSFLFILLSAKGVPQLLRDDCHNKTIFDIVVSENLSPTA
NFDKNGSNFNILANLLAAGNNEGLLNTSNAGGITLFAPNDDAIVRTAQDL
GYRGNDEYECYEYLISNLSRRYENPIEYLFNMPLYHIVAPSMNSTMVLEK
TSFETWDSGLPLHRIGLRLIDGNLELPDAELVPEMLDICTSNGYIHVINR
VLFAKPLAQPEERLKRQDEDIPCLEHSEEPLYSPEYDDLKTIDGLVAPTM
HTESHEEYGEHPKVGPIDINKPTLDPVSVPSHLPLPSWDFEYLGTPSETQ
SSEVNDSPEPTPHFIPSWNLNEPVILSPFPYETFDYNVDSSPSLDDNVSA
RPFPTLLEEYVPDSEFLTQTVQPSLLPVLPTDVSSNLKSTDPSEPDPTHL
DLFSTGPSPYFEELSPSTLPNFNFDIDPAAPSRESTAIIEGHFVESSTIP
EESFSSLLEGSPQETFDIEGTLDIFACFPRNAVVHLSHGKDIQVQDLQAG
HRVMSCESQSSAVYMFTHRTPVGLYPFVRIESVNNHTVELSPEHYIYANE
RLVVAERVEVGDRLRTLDGPSKVARISRVHRYGLYAPHTLHGDIVVGRIV
VSTYTNALPYWIAHPILEVLRLPVRLGITKEPIGGLLYNGCPKWKNLRTW
LF*

mRNA from alignment at ScGOVlb_1708:514083..516041-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5879.t1 ID=Gvermi5879.t1|Name=Gvermi5879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1959bp|location=Sequence derived from alignment at ScGOVlb_1708:514083..516041- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTACCTGCTTGTCTGCAGTACTACGTTTTCTATCTTTTCTTTTCAT
CTTGTTGAGCGCAAAAGGCGTTCCTCAGCTGTTACGAGATGACTGTCACA
ACAAAACGATCTTCGATATTGTAGTCAGCGAAAACTTATCTCCCACAGCT
AATTTCGACAAGAACGGATCCAATTTCAATATTCTAGCAAATCTTCTAGC
CGCTGGAAACAACGAGGGACTTTTAAACACCAGCAATGCAGGTGGAATCA
CATTATTTGCTCCCAACGACGACGCCATAGTGCGTACGGCTCAAGATTTA
GGTTACAGAGGAAATGACGAGTATGAATGTTACGAATATCTTATCTCCAA
CCTATCAAGACGATATGAGAACCCGATCGAATACCTCTTCAATATGCCTC
TGTACCACATTGTTGCTCCGAGCATGAATTCCACAATGGTCTTAGAAAAA
ACATCGTTTGAAACATGGGACTCTGGACTTCCCTTGCACCGCATTGGACT
TCGACTTATTGACGGAAATCTTGAGCTCCCAGATGCAGAACTTGTACCAG
AAATGCTGGACATATGCACATCAAATGGATACATTCACGTCATCAACAGA
GTTCTCTTTGCTAAACCATTGGCACAACCAGAAGAACGGCTGAAAAGGCA
AGATGAAGACATTCCTTGTCTAGAACATTCAGAAGAGCCACTTTATTCGC
CGGAATACGACGATTTGAAGACCATCGACGGTCTTGTCGCACCGACCATG
CATACTGAAAGTCACGAAGAATATGGGGAACACCCGAAGGTTGGTCCTAT
TGATATAAACAAACCCACATTGGATCCCGTTTCTGTCCCCTCTCATCTAC
CCTTGCCGTCGTGGGATTTTGAATACTTGGGTACTCCATCAGAAACGCAG
AGCTCAGAAGTGAATGATTCCCCAGAACCTACCCCGCACTTCATACCTTC
TTGGAACCTGAATGAACCTGTCATTTTGAGCCCTTTTCCGTACGAGACTT
TTGACTATAACGTCGATTCATCACCTTCATTGGATGACAACGTGAGCGCC
AGGCCCTTTCCGACTTTGTTGGAGGAATACGTACCAGACTCGGAATTCCT
AACACAAACTGTGCAACCATCACTTCTTCCAGTACTTCCAACTGATGTTT
CATCAAATTTGAAATCGACGGACCCATCTGAACCCGACCCCACTCATTTA
GACCTATTCTCGACTGGGCCGAGTCCATATTTTGAAGAACTTTCGCCCTC
AACGCTGCCTAATTTCAATTTCGACATTGATCCTGCTGCGCCGTCTCGTG
AAAGCACAGCTATCATAGAAGGGCACTTCGTAGAGAGCAGTACAATTCCT
GAAGAAAGCTTTTCTTCCCTTCTCGAAGGAAGCCCACAAGAGACTTTTGA
TATTGAAGGTACTCTAGACATTTTCGCATGCTTCCCAAGGAATGCCGTCG
TTCATTTATCTCACGGGAAAGATATTCAAGTACAAGATCTTCAAGCTGGT
CATCGTGTCATGTCCTGTGAGTCACAATCAAGCGCAGTATATATGTTTAC
CCACAGAACCCCGGTAGGATTATATCCGTTCGTTCGTATAGAATCAGTTA
ACAACCACACAGTTGAGCTTTCCCCTGAGCACTACATCTACGCAAACGAA
CGGTTGGTCGTTGCAGAAAGAGTTGAGGTGGGTGACAGACTCCGTACGCT
TGATGGACCTTCCAAAGTAGCCAGGATATCAAGGGTCCATAGATATGGCC
TGTATGCTCCGCACACTCTTCACGGTGACATTGTCGTCGGAAGAATCGTC
GTATCGACGTACACTAATGCTCTTCCCTATTGGATAGCACACCCAATCCT
TGAAGTACTCCGATTACCGGTGCGATTGGGTATTACCAAAGAACCCATAG
GTGGCCTTCTATACAATGGGTGCCCCAAGTGGAAGAACCTCAGAACGTGG
CTCTTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_1708:514083..516041-

>Gvermi5879.t1 ID=Gvermi5879.t1|Name=Gvermi5879.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1959bp|location=Sequence derived from alignment at ScGOVlb_1708:514083..516041- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTACCTGCTTGTCTGCAGTACTACGTTTTCTATCTTTTCTTTTCAT
CTTGTTGAGCGCAAAAGGCGTTCCTCAGCTGTTACGAGATGACTGTCACA
ACAAAACGATCTTCGATATTGTAGTCAGCGAAAACTTATCTCCCACAGCT
AATTTCGACAAGAACGGATCCAATTTCAATATTCTAGCAAATCTTCTAGC
CGCTGGAAACAACGAGGGACTTTTAAACACCAGCAATGCAGGTGGAATCA
CATTATTTGCTCCCAACGACGACGCCATAGTGCGTACGGCTCAAGATTTA
GGTTACAGAGGAAATGACGAGTATGAATGTTACGAATATCTTATCTCCAA
CCTATCAAGACGATATGAGAACCCGATCGAATACCTCTTCAATATGCCTC
TGTACCACATTGTTGCTCCGAGCATGAATTCCACAATGGTCTTAGAAAAA
ACATCGTTTGAAACATGGGACTCTGGACTTCCCTTGCACCGCATTGGACT
TCGACTTATTGACGGAAATCTTGAGCTCCCAGATGCAGAACTTGTACCAG
AAATGCTGGACATATGCACATCAAATGGATACATTCACGTCATCAACAGA
GTTCTCTTTGCTAAACCATTGGCACAACCAGAAGAACGGCTGAAAAGGCA
AGATGAAGACATTCCTTGTCTAGAACATTCAGAAGAGCCACTTTATTCGC
CGGAATACGACGATTTGAAGACCATCGACGGTCTTGTCGCACCGACCATG
CATACTGAAAGTCACGAAGAATATGGGGAACACCCGAAGGTTGGTCCTAT
TGATATAAACAAACCCACATTGGATCCCGTTTCTGTCCCCTCTCATCTAC
CCTTGCCGTCGTGGGATTTTGAATACTTGGGTACTCCATCAGAAACGCAG
AGCTCAGAAGTGAATGATTCCCCAGAACCTACCCCGCACTTCATACCTTC
TTGGAACCTGAATGAACCTGTCATTTTGAGCCCTTTTCCGTACGAGACTT
TTGACTATAACGTCGATTCATCACCTTCATTGGATGACAACGTGAGCGCC
AGGCCCTTTCCGACTTTGTTGGAGGAATACGTACCAGACTCGGAATTCCT
AACACAAACTGTGCAACCATCACTTCTTCCAGTACTTCCAACTGATGTTT
CATCAAATTTGAAATCGACGGACCCATCTGAACCCGACCCCACTCATTTA
GACCTATTCTCGACTGGGCCGAGTCCATATTTTGAAGAACTTTCGCCCTC
AACGCTGCCTAATTTCAATTTCGACATTGATCCTGCTGCGCCGTCTCGTG
AAAGCACAGCTATCATAGAAGGGCACTTCGTAGAGAGCAGTACAATTCCT
GAAGAAAGCTTTTCTTCCCTTCTCGAAGGAAGCCCACAAGAGACTTTTGA
TATTGAAGGTACTCTAGACATTTTCGCATGCTTCCCAAGGAATGCCGTCG
TTCATTTATCTCACGGGAAAGATATTCAAGTACAAGATCTTCAAGCTGGT
CATCGTGTCATGTCCTGTGAGTCACAATCAAGCGCAGTATATATGTTTAC
CCACAGAACCCCGGTAGGATTATATCCGTTCGTTCGTATAGAATCAGTTA
ACAACCACACAGTTGAGCTTTCCCCTGAGCACTACATCTACGCAAACGAA
CGGTTGGTCGTTGCAGAAAGAGTTGAGGTGGGTGACAGACTCCGTACGCT
TGATGGACCTTCCAAAGTAGCCAGGATATCAAGGGTCCATAGATATGGCC
TGTATGCTCCGCACACTCTTCACGGTGACATTGTCGTCGGAAGAATCGTC
GTATCGACGTACACTAATGCTCTTCCCTATTGGATAGCACACCCAATCCT
TGAAGTACTCCGATTACCGGTGCGATTGGGTATTACCAAAGAACCCATAG
GTGGCCTTCTATACAATGGGTGCCCCAAGTGGAAGAACCTCAGAACGTGG
CTCTTTTGA